Posts by CraniuMod

1) Message boards : Number crunching : Report long-running models here (Message 63570)
Posted 2 Oct 2009 by CraniuMod
Post:
9/23/2009 4:07:32 PM rosetta@home task 1fv5A_ZNMP_ABRELAX_tetraR_IGNORE_THE_REST_ZINC_METALLOPROTEIN-1fv5A-_14711_576_0 resumed by user
9/23/2009 4:07:33 PM rosetta@home Restarting task 1fv5A_ZNMP_ABRELAX_tetraR_IGNORE_THE_REST_ZINC_METALLOPROTEIN-1fv5A-_14711_576_0 using minirosetta version 197
9/23/2009 4:08:15 PM rosetta@home Task 1fv5A_ZNMP_ABRELAX_tetraR_IGNORE_THE_REST_ZINC_METALLOPROTEIN-1fv5A-_14711_576_0 exited with zero status but no 'finished' file
9/23/2009 4:08:15 PM rosetta@home If this happens repeatedly you may need to reset the project.
9/23/2009 4:08:15 PM rosetta@home Restarting task 1fv5A_ZNMP_ABRELAX_tetraR_IGNORE_THE_REST_ZINC_METALLOPROTEIN-1fv5A-_14711_576_0 using minirosetta version 197
9/23/2009 4:08:23 PM rosetta@home task 1fv5A_ZNMP_ABRELAX_tetraR_IGNORE_THE_REST_ZINC_METALLOPROTEIN-1fv5A-_14711_576_0 aborted by user
9/23/2009 4:08:24 PM World Community Grid Resuming task faah8210_ZINC04849622_xmdEq_2R5P1c_01_0 using faah version 607
9/23/2009 4:08:38 PM rosetta@home update requested by user
9/23/2009 4:08:44 PM rosetta@home Sending scheduler request: Requested by user.
9/23/2009 4:08:44 PM rosetta@home Reporting 2 completed tasks, not requesting new tasks
9/23/2009 4:08:48 PM rosetta@home Scheduler request completed
9/23/2009 4:08:48 PM rosetta@home [error] garbage_collect(); still have active task for acked result 1fv5A_ZNMP_ABRELAX_tetraR_IGNORE_THE_REST_ZINC_METALLOPROTEIN-1fv5A-_14711_576_0; state 5
9/23/2009 4:08:49 PM rosetta@home Computation for task 1fv5A_ZNMP_ABRELAX_tetraR_IGNORE_THE_REST_ZINC_METALLOPROTEIN-1fv5A-_14711_576_0 finished
9/23/2009 4:08:49 PM rosetta@home Output file 1fv5A_ZNMP_ABRELAX_tetraR_IGNORE_THE_REST_ZINC_METALLOPROTEIN-1fv5A-_14711_576_0_0 for task 1fv5A_ZNMP_ABRELAX_tetraR_IGNORE_THE_REST_ZINC_METALLOPROTEIN-1fv5A-_14711_576_0 absent


Looks to me like 1.97 is subject to a new variant of the lockfile problem, but at least a little more information appears to be reported for the new variant.

You may need to reboot or restart BOINC in order to clear away the remnants of the lockfile problem, if it's affecting any workunits that try to use the same slot later.

Also, I'd consider the possibility that 1.97 and faah 6.07 have some kind of conflict in how they handle zinc.


Did as suggested and all appears to be well although I haven't seen a zinc go through. Thanks.
2) Message boards : Number crunching : Report long-running models here (Message 63463)
Posted 26 Sep 2009 by CraniuMod
Post:
Will keep an eye out for this from hereon out. Has not happened on Rosetta before.
281082606
Name 1fv5A_ZNMP_ABRELAX_tetraR_IGNORE_THE_REST_ZINC_METALLOPROTEIN-1fv5A-_14711_576_0
Workunit 256342237
Created 15 Sep 2009 20:41:03 UTC
Sent 15 Sep 2009 20:53:55 UTC
Received 23 Sep 2009 20:09:18 UTC
Server state Over
Outcome Client error
Client state Aborted by user
Exit status -197 (0xffffff3b)
Computer ID 926185
Report deadline 25 Sep 2009 20:53:55 UTC
CPU time 19541.34
stderr out
<core_client_version>6.6.36</core_client_version>
<![CDATA[
<message>
aborted by user
</message>
]]>
Validate state Invalid
Claimed credit 78.92439165502
Granted credit 0
application version 1.97



Did you abort this task or what happened? 5.5 hrs is not really a long run.



Client was reporting this as running for 38 hrs. I did abort.
Went back to client log and found the below

9/23/2009 4:07:32 PM rosetta@home task 1fv5A_ZNMP_ABRELAX_tetraR_IGNORE_THE_REST_ZINC_METALLOPROTEIN-1fv5A-_14711_576_0 resumed by user
9/23/2009 4:07:33 PM rosetta@home Restarting task 1fv5A_ZNMP_ABRELAX_tetraR_IGNORE_THE_REST_ZINC_METALLOPROTEIN-1fv5A-_14711_576_0 using minirosetta version 197
9/23/2009 4:08:15 PM rosetta@home Task 1fv5A_ZNMP_ABRELAX_tetraR_IGNORE_THE_REST_ZINC_METALLOPROTEIN-1fv5A-_14711_576_0 exited with zero status but no 'finished' file
9/23/2009 4:08:15 PM rosetta@home If this happens repeatedly you may need to reset the project.
9/23/2009 4:08:15 PM rosetta@home Restarting task 1fv5A_ZNMP_ABRELAX_tetraR_IGNORE_THE_REST_ZINC_METALLOPROTEIN-1fv5A-_14711_576_0 using minirosetta version 197
9/23/2009 4:08:23 PM rosetta@home task 1fv5A_ZNMP_ABRELAX_tetraR_IGNORE_THE_REST_ZINC_METALLOPROTEIN-1fv5A-_14711_576_0 aborted by user
9/23/2009 4:08:24 PM World Community Grid Resuming task faah8210_ZINC04849622_xmdEq_2R5P1c_01_0 using faah version 607
9/23/2009 4:08:38 PM rosetta@home update requested by user
9/23/2009 4:08:44 PM rosetta@home Sending scheduler request: Requested by user.
9/23/2009 4:08:44 PM rosetta@home Reporting 2 completed tasks, not requesting new tasks
9/23/2009 4:08:48 PM rosetta@home Scheduler request completed
9/23/2009 4:08:48 PM rosetta@home [error] garbage_collect(); still have active task for acked result 1fv5A_ZNMP_ABRELAX_tetraR_IGNORE_THE_REST_ZINC_METALLOPROTEIN-1fv5A-_14711_576_0; state 5
9/23/2009 4:08:49 PM rosetta@home Computation for task 1fv5A_ZNMP_ABRELAX_tetraR_IGNORE_THE_REST_ZINC_METALLOPROTEIN-1fv5A-_14711_576_0 finished
9/23/2009 4:08:49 PM rosetta@home Output file 1fv5A_ZNMP_ABRELAX_tetraR_IGNORE_THE_REST_ZINC_METALLOPROTEIN-1fv5A-_14711_576_0_0 for task 1fv5A_ZNMP_ABRELAX_tetraR_IGNORE_THE_REST_ZINC_METALLOPROTEIN-1fv5A-_14711_576_0 absent
3) Message boards : Number crunching : Report long-running models here (Message 63435)
Posted 23 Sep 2009 by CraniuMod
Post:
Will keep an eye out for this from hereon out. Has not happened on Rosetta before.
281082606
Name 1fv5A_ZNMP_ABRELAX_tetraR_IGNORE_THE_REST_ZINC_METALLOPROTEIN-1fv5A-_14711_576_0
Workunit 256342237
Created 15 Sep 2009 20:41:03 UTC
Sent 15 Sep 2009 20:53:55 UTC
Received 23 Sep 2009 20:09:18 UTC
Server state Over
Outcome Client error
Client state Aborted by user
Exit status -197 (0xffffff3b)
Computer ID 926185
Report deadline 25 Sep 2009 20:53:55 UTC
CPU time 19541.34
stderr out
<core_client_version>6.6.36</core_client_version>
<![CDATA[
<message>
aborted by user
</message>
]]>
Validate state Invalid
Claimed credit 78.92439165502
Granted credit 0
application version 1.97






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