Posts by PaoloNasca

1) Message boards : Number crunching : Increase deadline on rosetta python projects 1.03 (vbox64) (Message 103775)
Posted 8 Dec 2021 by PaoloNasca
Post:
@Falconet
CPU time 01:38:01
Elapsed time 2d 16:06:37

@Jonathan
Thank you for your suggestion. I'm going to do it.
2) Message boards : Number crunching : Increase deadline on rosetta python projects 1.03 (vbox64) (Message 103772)
Posted 8 Dec 2021 by PaoloNasca
Post:
Could you increase the deadline from 3 days to 6 days?
I have a quite old PC (4GB Ram, Intel Core2 Duo CPU L9400 @1.86GHz, CentOS Stream release 8, vbox 6.1.28r147628).
I hope the WU is well running (95% of progress by 2.5 days) but deadline is coming to close.
3) Message boards : Number crunching : Rosetta needs 6675.72 MB RAM: is the restriction really needed? (Message 101061)
Posted 4 Apr 2021 by PaoloNasca
Post:
Thank you Brian Nixon and Grant (SSSF)
4) Message boards : Number crunching : Rosetta needs 6675.72 MB RAM: is the restriction really needed? (Message 101051)
Posted 4 Apr 2021 by PaoloNasca
Post:
To get new WUs, the PC needs 6675.72 MB.
Is the restriction really needed?

I can simultaneously run two or more WUs with 6675.72 MB RAM.

The odd conclusion is:
*) to get WUs I need 6675.72 MB RAM
*) Rosetta application runs with less than 6675.72 MB RAM

Thanks
5) Message boards : News : Switch to using SSL (Secure Socket Layer) (Message 95910)
Posted 3 May 2020 by PaoloNasca
Post:
About the need to modify the /var/lib/boinc/all_projects_list.xml file, I share what happened to me yesterday.

Without the changing, the Boinc Manager GUI Notices tabs was empty. Maybe I had to wait the exchanging of ssl keys or maybe not.

With the changing, the Notices tabs worked fine again.

You are very right.
If the all_progect_list,xml file will be distributed again by Boinc patch/release, we lose the modification.
6) Message boards : News : Switch to using SSL (Secure Socket Layer) (Message 95909)
Posted 3 May 2020 by PaoloNasca
Post:
To all Boincstats Account Manager (BAM!) users.

The BAM! admin has made the change. We have just to wait 48 hours (2 polling cycles).
In the first cycle the Rosetta project will be removed.
In the second one it will be attached again.

The https will be present in all the files and in the right place with no human intervention.

The Rosetta request to enable https has a side effect: all the running WUs will be aborted.
7) Message boards : News : Switch to using SSL (Secure Socket Layer) (Message 95888)
Posted 2 May 2020 by PaoloNasca
Post:
Hi Boulybud
I don’t understand your suggestion “I'm not sure you'll spend all your files settings in HTTPS with this method”. Could you explain me better?

About modifying the statistics_boinc.bakerlab.org_rosetta.xml file, I think it’s a good idea to change it but I’d like to share my today experience.
I didn’t change the statistics xml file and, after the restart:
*) I lost the Rosetta historical graph in the Boinc Manager GUI Statistics Tab
*) I found “https” written in statistics xml file

I’d like to share also the following steps I did in my first experience:
STEP 0 – Reset Projet
STEP 4 – After downloading project files, execute a second restart
8) Message boards : News : Switch to using SSL (Secure Socket Layer) (Message 95824)
Posted 2 May 2020 by PaoloNasca
Post:
I have just done the following steps in my 2 Linux Laptops managed by BAM.

Step 1 - Modify the file account_boinc.bakerlab.org_rosetta.xml
<master_url>https://boinc.bakerlab.org/rosetta/</master_url>

Step 2 - Modify the file all_projects_list.xml
<url>https://boinc.bakerlab.org/rosetta/</url>
<web_url>https://boinc.bakerlab.org/rosetta/</web_url>

Step 3 - Restart boinc manager
systemctl restart boinc-client.service

I didn't need to remove the projet and attach it again.
9) Questions and Answers : Android : Android devices and failing work units (Message 91336)
Posted 6 Nov 2019 by PaoloNasca
Post:
Hi,
the work units running on Androids fail.
My android device downloads the Linux application (named “Rosetta” v4.07), not the Android one (named “Rosetta for Android” v4.11).
The reason of failing Work Units could be the use of the Linux application on Android HW (ARM CPU).

What do you think?

This is the log

<core_client_version>6.12.33</core_client_version>
<![CDATA[
<message>
process got signal 11
</message>
<stderr_txt>
command: ../../projects/boinc.bakerlab.org_rosetta/rosetta_4.07_i686-pc-linux-gnu @7mersdiS_gly_0253_429.flags -nstruct 10000 -cpu_run_time 28800 -watchdog -boinc:max_nstruct 600 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2689813
Starting watchdog...
Watchdog active.
</stderr_txt>
]]>






©2022 University of Washington
https://www.bakerlab.org