Posts by Hal Bregg

1) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 91546)
Posted 13 Jan 2020 by Hal Bregg
Post:

One of the WUs errored out after 5hrs of running. It should run around 1 hour as per project settings.

Name 	rb_01_09_13386_13515_ab_t000__robetta_cstwt_5.0_FT_IGNORE_THE_REST_07_11_885102_10_1

Exit status 	139 (0x0000008B) Unknown error code


<core_client_version>7.9.3</core_client_version>
<![CDATA[
<message>
process got signal 11</message>
<stderr_txt>
command: ../../projects/boinc.bakerlab.org_rosetta/rosetta_4.07_i686-pc-linux-gnu @rb_01_09_13386_13515_ab_t000__robetta_FLAGS -in::file::fasta t000_.fasta -psipred_ss2 t000_.spider3_ss2 -kill_hairpins t000_.nobuformat.spider3_ss2 -jumps:pairing_file t000_.fasta.bbcontacts.jumps -abinitio::use_filters false -skip_convergence_check -jumps:overlap_chainbreak -seq_sep_stages 1 1 1 -ramp_chainbreaks -sep_switch_accelerate 0.8 -jumps:random_sheets 5 4 1 -constraints::cst_file t000_.fasta.CB.cst -constraints:cst_weight 5.0 -constraints::cst_fa_file t000_.fasta.MIN.cst -constraints:cst_fa_weight 5.0 -in:file:boinc_wu_zip rb_01_09_13386_13515_ab_t000__robetta.zip -frag3 rb_01_09_13386_13515_ab_t000__robetta.200.3mers.index.gz -fragA rb_01_09_13386_13515_ab_t000__robetta.200.11mers.index.gz -fragB rb_01_09_13386_13515_ab_t000__robetta.200.7mers.index.gz -nstruct 10000 -cpu_run_time 28800 -watchdog -boinc:max_nstruct 600 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 1009779
Starting watchdog...
Watchdog active.
BOINC:: CPU time: 18038.9s, 14400s + 3600s[2020- 1-13  6:54: 3:] :: BOINC 
WARNING! cannot get file size for default.out.gz: could not open file.
Output exists: default.out.gz Size: -1
InternalDecoyCount: 0 (GZ)
-----
0
-----
Stream information inconsistent.
Writing W_0000001
======================================================
DONE ::     1 starting structures  18038.9 cpu seconds
This process generated      1 decoys from       1 attempts
======================================================
06:54:03 (24943): called boinc_finish(0)

</stderr_txt>
]]>

2) Message boards : Number crunching : How to get only Rosetta mini ? (Message 90793)
Posted 25 May 2019 by Hal Bregg
Post:

Perhaps adding app_config.xml would help

<app_config>
<app>
    <name>minirosetta</name>
    <max_concurrent>your_number</max_concurrent> 
</app>
<app>
    <name>rosetta</name>
    <max_concurrent>0</max_concurrent> 
</app>
</app_config>

and restart boinc client at the end.