1)
Message boards :
Number crunching :
If You Don't Know Where to Put it, Post it here.
(Message 99611)
Posted 7 Nov 2020 by Ivailo Bonev Post: I don't see any new Ryzen in the CPU list. Hmm... https://boinc.bakerlab.org/rosetta/cpu_list.php |
2)
Message boards :
Number crunching :
Rosetta 4.1+ and 4.2+
(Message 96555)
Posted 16 May 2020 by Ivailo Bonev Post: Same for all my "split" tasks: split_pass_bp_agba--rlx_aln_c1_aln_pass_build.bp_20200508201700.pdb-edge1-4-6_renumbered_obj01_polA-3-5.pdb.blue.bp_20200509193616_0001_0001_fragments_fold_SAVE_ALL_OUT_929541_939_0 split_pass_bp_agba--rlx_aln_c1_aln_pass_build.bp_20200508201700.pdb-edge1-4-6_renumbered_obj01_polA-3-5.pdb.blue.bp_20200509213503_0001_0001_fragments_fold_SAVE_ALL_OUT_929546_715_1 split_pass_bp_agba--rlx_aln_c1_aln_pass_build.bp_20200508201700.pdb-edge1-4-6_renumbered_obj01_polA-3-5.pdb.blue.bp_20200509235721_0001_0001_fragments_fold_SAVE_ALL_OUT_929550_594_0 split_pass_bp_agba--rlx_aln_c1_aln_pass_build.bp_20200508201700.pdb-edge1-4-6_renumbered_obj01_polA-3-5.pdb.blue.bp_20200510030335_0001_0001_fragments_fold_SAVE_ALL_OUT_929553_645_0 split_pass_bp_agba--rlx_aln_c1_aln_pass_build.bp_20200508201700.pdb-edge1-4-6_renumbered_obj01_polA-3-5.pdb.blue.bp_20200510085851_0001_0001_fragments_fold_SAVE_ALL_OUT_929563_363_1 All with the error: <message> upload failure: <file_xfer_error> <file_name>split_pass_bp_agba--rlx_aln_c1_aln_pass_build.bp_20200508201700.pdb-edge1-4-6_renumbered_obj01_polA-3-5.pdb.blue.bp_20200510085851_0001_0001_fragments_fold_SAVE_ALL_OUT_929563_363_1_r550533968_0</file_name> <error_code>-240 (stat() failed)</error_code> </file_xfer_error> </message> |
3)
Message boards :
Number crunching :
Rosetta 4.1+ and 4.2+
(Message 96357)
Posted 11 May 2020 by Ivailo Bonev Post: https://boinc.bakerlab.org/rosetta/result.php?resultid=1176852042 <core_client_version>7.16.5</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1)</message> <stderr_txt> command: projects/boinc.bakerlab.org_rosetta/rosetta_4.20_windows_x86_64.exe -run:protocol jd2_scripting -parser:protocol jhr_boinc_v4.xml @flags -in:file:silent Junior_HalfRoid_design5_COVID-19_SAVE_ALL_OUT_IGNORE_THE_REST_6gx3kn9p.silent -in:file:silent_struct_type binary -silent_gz -mute all -out:file:silent_struct_type binary -out:file:silent default.out -in:file:boinc_wu_zip Junior_HalfRoid_design5_COVID-19_SAVE_ALL_OUT_IGNORE_THE_REST_6gx3kn9p.zip @Junior_HalfRoid_design5_COVID-19_SAVE_ALL_OUT_IGNORE_THE_REST_6gx3kn9p.flags -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 3876534 Using database: database_357d5d93529_n_methylminirosetta_database ERROR: [ERROR] Unable to open constraints file: f39b38c813752ceb1e616c99588b316d_n0_c0_1_0001.MSAcst ERROR:: Exit from: ......srccorescoringconstraintsConstraintIO.cc line: 457 BOINC:: Error reading and gzipping output datafile: default.out 11:22:22 (11520): called boinc_finish(1) </stderr_txt> ]]> |
4)
Message boards :
Number crunching :
Rosetta 4.1+ and 4.2+
(Message 95932)
Posted 3 May 2020 by Ivailo Bonev Post: Same error 3cl_9aa_6lu7_modified_AVLstub_relaxed_renumbered_0004_76_extract_B_SAVE_ALL_OUT_926264_295_1 https://boinc.bakerlab.org/rosetta/result.php?resultid=1168836107 Probably these are "bad" units. |
5)
Message boards :
Number crunching :
RALPH@Home ?
(Message 95591)
Posted 30 Apr 2020 by Ivailo Bonev Post: New 4.18 version at Ralph@Home. |
6)
Message boards :
Number crunching :
0 new tasks, Rosetta?
(Message 93548)
Posted 5 Apr 2020 by Ivailo Bonev Post: Please join http://ralph.bakerlab.org/ Ralph@Home - alpha test project for Rosetta@Home I hope so, I received a dozen new tasks today. |
7)
Message boards :
Number crunching :
0 new tasks, Rosetta?
(Message 93544)
Posted 5 Apr 2020 by Ivailo Bonev Post: Please join http://ralph.bakerlab.org/ Ralph@Home - alpha test project for Rosetta@Home New version needs to be tested on a different platforms (x86,AMD64, ARM) and different OSes (Windows, MacOS, Linux). https://ralph.bakerlab.org/forum_thread.php?id=839&postid=6672#6672 Thank you! |
8)
Message boards :
Number crunching :
Error while computing
(Message 93494)
Posted 5 Apr 2020 by Ivailo Bonev Post: Hello, i've got 32Gb RAM and used is 15Gb. The RAM has no problems. If you want to quit, abort all your tasks, and then quit, it will be faster for others to do your work. I'll recommend you to abort all the tasks and reset the project, but it's your PC and you can do what you want. I had already a few times the problem that when the client sent a screensaver it was impossible to get back. Is there a possibility to suppress this screensaver? You can disable screensaver, or change it to show something different. |
9)
Message boards :
Number crunching :
Error while computing
(Message 93483)
Posted 5 Apr 2020 by Ivailo Bonev Post: I had already a few times the problem that when the client sent a screensaver it was impossible to get back. Is there a possibility to suppress this screensaver? Check your memory with Memtest for Windows. Have you overclocked your RAM, or/and CPU? |
10)
Message boards :
News :
Outage notice
(Message 93475)
Posted 5 Apr 2020 by Ivailo Bonev Post: What I do not understand is why my computers are not getting any tasks while the Server Status says there are over 500K queued jobs? Look at Computing->Server Status, not the front page. |
11)
Message boards :
Number crunching :
Rosetta x86 on AMD CPU
(Message 93352)
Posted 4 Apr 2020 by Ivailo Bonev Post: We were seeing this same behavior over at WCG on the MIP project which also uses Rosetta. The MIP developers posted this reply after we had sent them some data on what we were seeing (this was a couple of years ago): Thank you for the answer and explanation, I see now usual behavior from the CPU, maybe data in the first batch with 4.12 was much more different and "hungry for L3 cache". |
12)
Message boards :
Number crunching :
Question about Load Sharing
(Message 93196)
Posted 3 Apr 2020 by Ivailo Bonev Post: My understanding is that every xx min it checks to see if it should switch or not. It may or may not switch at that time, depending on the debt owed (or not) to the other project(s). Probably you are right, I haven't had more than 2 projects on 1 PC, and mostly they use different resources (like 1 for CPU, and 1 for GPU). |
13)
Message boards :
Number crunching :
Question about Load Sharing
(Message 93187)
Posted 3 Apr 2020 by Ivailo Bonev Post: I thought that means each get 1/3 CPU. No, if you have 3 projects, they will share CPU time equally, but every one will use CPU for the time set in BOINC Manager, Options-Computing Preferences(Computing tab)-Switch between tasks every ... minutes (default 60). So every project will switch after 1 hour time if you not set it different. |
14)
Message boards :
Number crunching :
Rosetta x86 on AMD CPU
(Message 93174)
Posted 3 Apr 2020 by Ivailo Bonev Post: I think something is off with the CPU utilization by new 4.12 app for the new Ryzen 3k systems. I have 3800X and with 4.07 had consistent 79-80C temps under the full load (CPU Package power - 105-107W), now with 4.12 app, temps are 65-70C under full load (CPU Package power is 80-85W). What was changed? I was under impression that new app will be somewhat more optimized for the new CPU-s. |
15)
Message boards :
News :
Rosetta's role in fighting coronavirus
(Message 92117)
Posted 22 Mar 2020 by Ivailo Bonev Post: Here we go, my first unit for COVID-19 related research! |
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