Posts by Matthias Lehmkuhl

1) Message boards : Number crunching : Minirosetta 3.50 (Message 76706)
Posted 10 May 2014 by Matthias Lehmkuhl
Post:
I got also on Ubuntu 14.04 an error after finishing the result
# cpu_run_time_pref: 36000
======================================================
DONE :: 3 starting structures 31590.2 cpu seconds
This process generated 3 decoys from 3 attempts
======================================================
BOINC :: WS_max 3.13151e-294

BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
terminate called after throwing an instance of \'std::bad_alloc\'
what(): St9bad_alloc

</stderr_txt>

Ebola_strand_repeat_41limit_1L13H3L8E7L8E1L_25_33_c_312_1-2.P.0_SAVE_ALL_OUT__162400_11
http://boinc.bakerlab.org/rosetta/result.php?resultid=659471415
2) Message boards : Number crunching : Why so much variation? (Message 66447)
Posted 3 Jun 2010 by Matthias Lehmkuhl
Post:
Got also one with very low granted credit

rhoA15May2010_1lb1_1w9w_ProteinInterfaceDesign_15May2010_20686_58_1

DONE :: 143 starting structures 32927 cpu seconds
This process generated 143 decoys from 143 attempts

Claimed credit 94.7424055372759
Granted credit 7.88833689203152

edit:
no reboot or suspend appears due runtime based on stderr out
3) Message boards : Number crunching : WU download error: couldn\'t get input files: (Message 58470)
Posted 4 Jan 2009 by Matthias Lehmkuhl
Post:
four more WU with MD5 check failed error

wuid=199114555
wuid=199117329
wuid=199117329
wuid=199118786
4) Message boards : Number crunching : Minirosetta v1.47 bug thread. (Message 58467)
Posted 4 Jan 2009 by Matthias Lehmkuhl
Post:
got also one WU lr5_score12... with error

<message>
- exit code -1073741819 (0xc0000005)
</message>


wuid=198929431
5) Message boards : Number crunching : WU download error: couldn\'t get input files: (Message 58460)
Posted 4 Jan 2009 by Matthias Lehmkuhl
Post:
This two WU also had the MD5sum error while downloading

wuid=199102728
wuid=199099657

<message>
WU download error: couldn\'t get input files:
<file_xfer_error>
<file_name>boinc_mfr_aaat01_03_05.200_v1_3.gz</file_name>
<error_code>-119</error_code>
<error_message>MD5 check failed</error_message>
</file_xfer_error>

6) Questions and Answers : Windows : Compute errors (Message 57540)
Posted 3 Dec 2008 by Matthias Lehmkuhl
Post:
see also
Thread: download error MD5 check failed

I got these messages, some of my wingman end with compute errors.

I\'ve set my computers to \"no new work\" till any update from Project administrator
7) Questions and Answers : Windows : download error MD5 check failed (Message 57397)
Posted 1 Dec 2008 by Matthias Lehmkuhl
Post:
Hi,
today I\'ve on three of my machines download errors from rosetta (application: Rosetta Mini).
On all downloads i get the message [error] MD5 check failed for ...
hostid=324354
On one WU my wingman also got the download error.
One other WU my wingman got Compute error.
The other results are not reported yet.

For my other Projects I\'ve no Problems with the up- or download of files.
for now I\'ve set my machines to no new work for rosetta.

Extract from Boinc Manager
01.12.2008 09:58:06|rosetta@home|Sending scheduler request: To report completed tasks. Requesting 1244 seconds of work, reporting 1 completed tasks
01.12.2008 09:58:12|rosetta@home|Scheduler request succeeded: got 1 new tasks
01.12.2008 09:58:14|rosetta@home|Started download of boinc_yebf_aah011_03_05.200_v1_3.gz
01.12.2008 09:58:14|rosetta@home|Started download of boinc_yebf_aah011_07_05.200_v1_3.gz
01.12.2008 09:58:15|rosetta@home|Temporarily failed download of boinc_yebf_aah011_03_05.200_v1_3.gz: HTTP error
01.12.2008 09:58:15|rosetta@home|Temporarily failed download of boinc_yebf_aah011_07_05.200_v1_3.gz: HTTP error
01.12.2008 09:58:15|rosetta@home|Started download of boinc_yebf_aah011_09_05.200_v1_3.gz
01.12.2008 09:58:15|rosetta@home|Started download of yebf_h011_.psipred_ss2
01.12.2008 09:58:16|rosetta@home|Temporarily failed download of boinc_yebf_aah011_09_05.200_v1_3.gz: HTTP error
01.12.2008 09:58:16|rosetta@home|Temporarily failed download of yebf_h011_.psipred_ss2: HTTP error
01.12.2008 09:58:16|rosetta@home|Started download of yebf_h011_.fasta.gz
01.12.2008 09:58:17|rosetta@home|Started download of boinc_yebf_aah011_03_05.200_v1_3.gz
01.12.2008 09:58:17|rosetta@home|Temporarily failed download of yebf_h011_.fasta.gz: HTTP error
01.12.2008 09:58:19|rosetta@home|Temporarily failed download of boinc_yebf_aah011_03_05.200_v1_3.gz: HTTP error
01.12.2008 09:58:19|rosetta@home|Started download of boinc_yebf_aah011_07_05.200_v1_3.gz
01.12.2008 09:58:19|rosetta@home|Started download of boinc_yebf_aah011_09_05.200_v1_3.gz
01.12.2008 09:58:20|rosetta@home|Temporarily failed download of boinc_yebf_aah011_07_05.200_v1_3.gz: HTTP error
01.12.2008 09:58:20|rosetta@home|Temporarily failed download of boinc_yebf_aah011_09_05.200_v1_3.gz: HTTP error
01.12.2008 09:58:20|rosetta@home|Started download of yebf_h011_.psipred_ss2
01.12.2008 09:58:20|rosetta@home|Started download of yebf_h011_.fasta.gz
01.12.2008 09:58:21|rosetta@home|Temporarily failed download of yebf_h011_.psipred_ss2: HTTP error
01.12.2008 09:58:21|rosetta@home|Temporarily failed download of yebf_h011_.fasta.gz: HTTP error
01.12.2008 09:58:22|rosetta@home|Started download of boinc_yebf_aah011_03_05.200_v1_3.gz
01.12.2008 09:58:22|rosetta@home|Started download of boinc_yebf_aah011_07_05.200_v1_3.gz
01.12.2008 09:58:35|rosetta@home|Finished download of boinc_yebf_aah011_03_05.200_v1_3.gz
01.12.2008 09:58:35|rosetta@home|Started download of boinc_yebf_aah011_09_05.200_v1_3.gz
01.12.2008 09:58:35|rosetta@home|[error] MD5 check failed for boinc_yebf_aah011_03_05.200_v1_3.gz
01.12.2008 09:58:35|rosetta@home|[error] expected e56fe0505400b5a44fab661854063e6c, got 37f53c523959a04c944eecdafca6a92e
01.12.2008 09:58:35|rosetta@home|[error] Checksum or signature error for boinc_yebf_aah011_03_05.200_v1_3.gz
01.12.2008 09:58:47|rosetta@home|Finished download of boinc_yebf_aah011_07_05.200_v1_3.gz
01.12.2008 09:58:47|rosetta@home|Started download of yebf_h011_.psipred_ss2
01.12.2008 09:58:47|rosetta@home|[error] MD5 check failed for boinc_yebf_aah011_07_05.200_v1_3.gz
01.12.2008 09:58:47|rosetta@home|[error] expected b8a50b2c9668578f5e950fb7924b8124, got 27d536f94e3e1b52b6deb7c93cc0ac10
01.12.2008 09:58:47|rosetta@home|[error] Checksum or signature error for boinc_yebf_aah011_07_05.200_v1_3.gz
01.12.2008 09:58:49|rosetta@home|Finished download of yebf_h011_.psipred_ss2
01.12.2008 09:58:49|rosetta@home|Started download of yebf_h011_.fasta.gz
01.12.2008 09:58:50|rosetta@home|Finished download of yebf_h011_.fasta.gz
01.12.2008 09:59:06|rosetta@home|Finished download of boinc_yebf_aah011_09_05.200_v1_3.gz
01.12.2008 09:59:06|rosetta@home|[error] MD5 check failed for boinc_yebf_aah011_09_05.200_v1_3.gz
01.12.2008 09:59:06|rosetta@home|[error] expected dcca196f65220272b3ba8ece0bc1a47c, got d1410b4bc95c2ac23e1fb20105104936
01.12.2008 09:59:06|rosetta@home|[error] Checksum or signature error for boinc_yebf_aah011_09_05.200_v1_3.gz
01.12.2008 10:02:15|rosetta@home|Sending scheduler request: To report completed tasks. Requesting 0 seconds of work, reporting 1 completed tasks
01.12.2008 10:02:20|rosetta@home|Scheduler request succeeded: got 0 new tasks

edit: on this machine I\'ve 28 results with download errors.
hostid=421529
the other reported results are also have download or compute errors.
8) Message boards : Number crunching : Problems with Rosetta version 5.98 (Message 56291)
Posted 8 Oct 2008 by Matthias Lehmkuhl
Post:
I got this error on a machine, causes a window with user acknowledge, where the CPU runs no other boinc project since I press OK.

resultid=197473964

Exit status -1073741819 (0xc0000005)

<core_client_version>6.2.19</core_client_version>
<![CDATA[
<message>
- exit code -1073741819 (0xc0000005)
</message>
<stderr_txt>
# cpu_run_time_pref: 14400
# random seed: 2595731


Unhandled Exception Detected...

application version 5.98

edit:
Name HR19__BOINC_LONGNOE_JUMPRELAX_BARCODE_SAVE_ALL_OUT_200-HR19_-_4539_235730_1
9) Message boards : Number crunching : Problems with version 5.96 (Message 52791)
Posted 29 Apr 2008 by Matthias Lehmkuhl
Post:
got also an validate error on resultid=158368356

stderr out
<core_client_version>6.1.0</core_client_version>
<![CDATA[
<stderr_txt>
# cpu_run_time_pref: 10800
# random seed: 1637406
# cpu_run_time_pref: 10800
===
</stderr_txt>
]]>
Validate state Invalid
looks like the \"stderr_txt\" was written wrong

two other result on the same computer finished valid


my wingman finished valid

my wingman\'s stderr out

<core_client_version>5.10.28</core_client_version>
<![CDATA[
<stderr_txt>
Graphics are disabled due to configuration...
# cpu_run_time_pref: 10800
# random seed: 1637406
======================================================
DONE :: 1 starting structures 7973.24 cpu seconds
This process generated 2 decoys from 2 attempts
0 starting pdbs were skipped
======================================================


BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...
called boinc_finish

</stderr_txt>
]]>
10) Message boards : Number crunching : Problems with Rosetta version 5.81 (Message 48576)
Posted 11 Nov 2007 by Matthias Lehmkuhl
Post:
I use Show Graphics in Boinc Manager on application version 5.81 and after an little time i closed the window.
This causes an error of the Result with the following error message:
<core_client_version>5.10.28</core_client_version>
<![CDATA[
<message>
- exit code 1073807364 (0x40010004)
</message>
<stderr_txt>
# cpu_run_time_pref: 10800
# random seed: 3802685

</stderr_txt>
]]>

resultid=119553269

Matthias






©2019 University of Washington
http://www.bakerlab.org