Posts by Sven

1) Message boards : Number crunching : Large numbers of tasks aborted by project killing CPU performance (Message 97490)
Posted 22 Jun 2020 by Sven
Post:
Hmm, I must say that I can see a bit of truth in the suggestion to have longer deadlines. As long as it is mandatory sometimes to switch of computers over weekends, the 3 day deadline is very fast reached. 5 days instead would be a great deal to get crunching in time.

I usually adjust my system in a way that makes successful crunchings possible - for example store at least 0 days of work and at least 0.1 days (standard adjustment). But the 3 days over weekends are always problematic.
2) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 96435)
Posted 13 May 2020 by Sven
Post:
I guess it would be worth it to try and install a parallel running Linux distribution on this machine.

Adjusting the antivirus settings didn't work at all and it seems to be generally problematic with running on Windows XP.

My lack of memory would still be unsolved.
3) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 96434)
Posted 13 May 2020 by Sven
Post:
Hi all,

I just found an old outsourced computer which would work pretty well just for crunching Rosetta tasks.
Unfortunately the computation stopps after some seconds with "computation error".

Does anyone have an idea, where the problem could be? See the event log below:

[snip]

You're looking at the wrong log file to see much about THIS problem.

To see the one with more information for this problem:

If you're using the simple view of the BOINC Manager, find View near the top line, click on it, then click on Advanced View.

Click on Projects in one of the top lines, then Rosetta@home, then Your tasks.

In the Status column, find one of the failed tasks. Ignore those shown as In progress - they don't have the other log file yet. Ignore those shown as Completed and validated for now unless you want to see one without errors for comparison purposes.

When you find one, click on the number in this line, but in the Task column. This gives the log file specific to that task.

Scroll down as needed. In this case, look at the line starting with unzip, which shows the error triggering all other errors for this task,

I've looked at this file for some of your failed tasks, and have thought of three possibilities:

1. The task was built improperly, and the list of files it needs left out one or two of the zip files. It may have assumed, incorrectly, that some previous task had downloaded it or them.

2. Your antivirus program hid one or both of those files. You might check the log file of your antivirus program, if it has one.

3. These tasks used version v4.21 of the Rosetta application, which I have not seen mentioned before. That version might have the wrong builtin names for files to send to unzip.

For 1, about all you can do is wait for more tasks that fix this problem.

For 2, you might have to tell your antivirus program not to scan the directories for BOINC.

For 3, you might watch the forums for mentions of that version, to see if similar problems are reported by others.

On another subject, I also looked at the specs for that computer, which runs Windows XP. You might look for threads on whether the current versions of Rosetta are compatible with Windows XP.

The current tasks take up to 2 GB of memory each and sometimes more, so you may have problems with the tasks running out of memory once you can get them to run longer, if you allow one task each for the 4 virtual CPU cores on that computer. You may have to limit it to only one task at a time. That computer has only 4 GB of main memory, and some of it is reserved for the Windows operating system.



Here we are, one of the failed tasks with its specific log file:
Don't know where to get the minirosetta database from if it's not downloaded by Boinc itself.

<core_client_version>7.14.2</core_client_version>
<![CDATA[
<message>
Unzul´┐Żssige Funktion.
(0x1) - exit code 1 (0x1)</message>
<stderr_txt>
command: projects/boinc.bakerlab.org_rosetta/rosetta_4.21_windows_intelx86.exe -run:protocol jd2_scripting -parser:protocol predictor_v11_boinc--fuse--covid_groove_design_boinc_v1_mod.xml @flags_covid_groove2 -in:file:silent Mini_Protein_binds_COVID-19_groove_design1_8_SAVE_ALL_OUT_IGNORE_THE_REST_4gv6ne9i.silent -in:file:silent_struct_type binary -silent_gz -mute all -silent_read_through_errors true -out:file:silent_struct_type binary -out:file:silent default.out -in:file:boinc_wu_zip Mini_Protein_binds_COVID-19_groove_design1_8_SAVE_ALL_OUT_IGNORE_THE_REST_4gv6ne9i.zip @Mini_Protein_binds_COVID-19_groove_design1_8_SAVE_ALL_OUT_IGNORE_THE_REST_4gv6ne9i.flags -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 3074316
Extracting in slot directory: minirosetta_database.zip
unzip: cannot find either ../../projects/boinc.bakerlab.org_rosetta/database_357d5d93529_n_methyl.zip or ../../projects/boinc.bakerlab.org_rosetta/database_357d5d93529_n_methyl.zip.zip.
Using database: minirosetta_database
Cannot find database: minirosetta_database

</stderr_txt>
]]>
4) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 96399)
Posted 12 May 2020 by Sven
Post:
Hi all,

I just found an old outsourced computer which would work pretty well just for crunching Rosetta tasks.
Unfortunately the computation stopps after some seconds with "computation error".

Does anyone have an idea, where the problem could be? See the event log below:


12/05/2020 13:41:12 | | cc_config.xml not found - using defaults
12/05/2020 13:41:12 | | Starting BOINC client version 7.14.2 for windows_intelx86
12/05/2020 13:41:12 | | log flags: file_xfer, sched_ops, task
12/05/2020 13:41:12 | | Libraries: libcurl/7.47.1 OpenSSL/1.0.2g zlib/1.2.8
12/05/2020 13:41:12 | | Data directory: C:Programmeboinc
12/05/2020 13:41:12 | | Running under account Sven
12/05/2020 13:41:12 | | No usable GPUs found
12/05/2020 13:41:12 | | Creating new client state file
12/05/2020 13:41:12 | | Host name: viperle
12/05/2020 13:41:12 | | Processor: 4 GenuineIntel Intel(R) Core(TM)2 Quad CPU Q6600 @ 2.40GHz [Family 6 Model 15 Stepping 11]
12/05/2020 13:41:12 | | Processor features: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss htt tm pni ssse3 cx16 nx lm vmx tm2 pbe
12/05/2020 13:41:12 | | OS: Microsoft Windows XP: Professional x86 Edition, Service Pack 3, (05.01.2600.00)
12/05/2020 13:41:12 | | Memory: 3.25 GB physical, 5.09 GB virtual
12/05/2020 13:41:12 | | Disk: 146.48 GB total, 116.06 GB free
12/05/2020 13:41:12 | | Local time is UTC +2 hours
12/05/2020 13:41:12 | | Last benchmark was 18394 days 11:41:12 ago
12/05/2020 13:41:17 | | No general preferences found - using defaults
12/05/2020 13:41:17 | | Preferences:
12/05/2020 13:41:17 | | max memory usage when active: 1663.49 MB
12/05/2020 13:41:17 | | max memory usage when idle: 2994.28 MB
12/05/2020 13:41:17 | | max disk usage: 115.97 GB
12/05/2020 13:41:17 | | don't use GPU while active
12/05/2020 13:41:17 | | suspend work if non-BOINC CPU load exceeds 25%
12/05/2020 13:41:17 | | (to change preferences, visit a project web site or select Preferences in the Manager)
12/05/2020 13:41:17 | | Setting up project and slot directories
12/05/2020 13:41:17 | | Checking active tasks
12/05/2020 13:41:17 | | Setting up GUI RPC socket
12/05/2020 13:41:17 | | Checking presence of 0 project files
12/05/2020 13:41:17 | | This computer is not attached to any projects
12/05/2020 13:41:26 | | Fetching configuration file from http://boinc.bakerlab.org/rosetta/get_project_config.php
12/05/2020 13:41:45 | | Running CPU benchmarks
12/05/2020 13:41:45 | | Suspending computation - CPU benchmarks in progress
12/05/2020 13:42:16 | | Benchmark results:
12/05/2020 13:42:16 | | Number of CPUs: 4
12/05/2020 13:42:16 | | 2341 floating point MIPS (Whetstone) per CPU
12/05/2020 13:42:16 | | 5245 integer MIPS (Dhrystone) per CPU
12/05/2020 13:42:17 | | Resuming computation
12/05/2020 13:42:19 | Rosetta@home | Master file download succeeded
12/05/2020 13:42:24 | Rosetta@home | Sending scheduler request: Project initialization.
12/05/2020 13:42:24 | Rosetta@home | Requesting new tasks for CPU
12/05/2020 13:42:26 | Rosetta@home | Scheduler request completed: got 1 new tasks
12/05/2020 13:42:26 | Rosetta@home | New computer location: home
12/05/2020 13:42:31 | | General prefs: from http://lhcathomeclassic.cern.ch/sixtrack/ (last modified 06-Mar-2015 20:46:54)
12/05/2020 13:42:31 | | Host location: none
12/05/2020 13:42:31 | | General prefs: using your defaults
12/05/2020 13:42:31 | | Preferences:
12/05/2020 13:42:31 | | max memory usage when active: 1663.49 MB
12/05/2020 13:42:31 | | max memory usage when idle: 2994.28 MB
12/05/2020 13:42:31 | | max disk usage: 73.24 GB
12/05/2020 13:42:31 | | Number of usable CPUs has changed from 4 to 2.
12/05/2020 13:42:31 | | max CPUs used: 2
12/05/2020 13:42:31 | | don't use GPU while active
12/05/2020 13:42:31 | | suspend work if non-BOINC CPU load exceeds 25%
12/05/2020 13:42:31 | | (to change preferences, visit a project web site or select Preferences in the Manager)
12/05/2020 13:42:32 | Rosetta@home | Started download of rosetta_4.21_windows_intelx86.exe
12/05/2020 13:42:32 | Rosetta@home | Started download of rosetta_graphics_4.21_windows_intelx86.exe
12/05/2020 13:43:01 | Rosetta@home | Sending scheduler request: To fetch work.
12/05/2020 13:43:01 | Rosetta@home | Requesting new tasks for CPU
12/05/2020 13:43:03 | Rosetta@home | Scheduler request completed: got 1 new tasks
12/05/2020 13:44:14 | | General prefs: from http://lhcathomeclassic.cern.ch/sixtrack/ (last modified 06-Mar-2015 20:46:54)
12/05/2020 13:44:14 | | Host location: none
12/05/2020 13:44:14 | | General prefs: using your defaults
12/05/2020 13:44:14 | | Reading preferences override file
12/05/2020 13:44:14 | | Preferences:
12/05/2020 13:44:14 | | max memory usage when active: 1663.49 MB
12/05/2020 13:44:14 | | max memory usage when idle: 2994.28 MB
12/05/2020 13:44:14 | | max disk usage: 73.24 GB
12/05/2020 13:44:14 | | max CPUs used: 2
12/05/2020 13:44:14 | | suspend work if non-BOINC CPU load exceeds 25%
12/05/2020 13:44:14 | | (to change preferences, visit a project web site or select Preferences in the Manager)
12/05/2020 13:45:23 | Rosetta@home | Finished download of rosetta_graphics_4.21_windows_intelx86.exe
12/05/2020 13:45:23 | Rosetta@home | Started download of database_357d5d93529_n_methyl.zip
12/05/2020 13:45:29 | Rosetta@home | Finished download of rosetta_4.21_windows_intelx86.exe
12/05/2020 13:45:29 | Rosetta@home | Started download of LiberationSans-Regular.ttf
12/05/2020 13:45:31 | Rosetta@home | Finished download of LiberationSans-Regular.ttf
12/05/2020 13:45:31 | Rosetta@home | Started download of flags_covid_groove2
12/05/2020 13:45:32 | Rosetta@home | Finished download of flags_covid_groove2
12/05/2020 13:45:32 | Rosetta@home | Started download of Mini_Protein_binds_COVID-19_groove_design1_9_SAVE_ALL_OUT_IGNORE_THE_REST_6gv4fh9s.zip
12/05/2020 13:45:38 | Rosetta@home | Finished download of Mini_Protein_binds_COVID-19_groove_design1_9_SAVE_ALL_OUT_IGNORE_THE_REST_6gv4fh9s.zip
12/05/2020 13:45:38 | Rosetta@home | Started download of Mini_Protein_binds_COVID-19_groove_design1_9_SAVE_ALL_OUT_IGNORE_THE_REST_6gv4fh9s.flags
12/05/2020 13:45:39 | Rosetta@home | Finished download of Mini_Protein_binds_COVID-19_groove_design1_9_SAVE_ALL_OUT_IGNORE_THE_REST_6gv4fh9s.flags
12/05/2020 13:45:39 | Rosetta@home | Started download of r3x_0904_data.zip
12/05/2020 13:45:40 | Rosetta@home | Finished download of r3x_0904_data.zip
12/05/2020 14:07:32 | Rosetta@home | Finished download of database_357d5d93529_n_methyl.zip
12/05/2020 14:15:53 | Rosetta@home | Starting task Mini_Protein_binds_COVID-19_groove_design1_9_SAVE_ALL_OUT_IGNORE_THE_REST_6gv4fh9s_927641_8_0
12/05/2020 14:16:08 | Rosetta@home | Computation for task Mini_Protein_binds_COVID-19_groove_design1_9_SAVE_ALL_OUT_IGNORE_THE_REST_6gv4fh9s_927641_8_0 finished
12/05/2020 14:16:08 | Rosetta@home | Output file Mini_Protein_binds_COVID-19_groove_design1_9_SAVE_ALL_OUT_IGNORE_THE_REST_6gv4fh9s_927641_8_0_r924213539_0 for task Mini_Protein_binds_COVID-19_groove_design1_9_SAVE_ALL_OUT_IGNORE_THE_REST_6gv4fh9s_927641_8_0 absent
12/05/2020 14:16:12 | Rosetta@home | Starting task r3x_0904_fold_SAVE_ALL_OUT_920537_1458_0
12/05/2020 14:16:16 | Rosetta@home | Computation for task r3x_0904_fold_SAVE_ALL_OUT_920537_1458_0 finished
12/05/2020 14:16:16 | Rosetta@home | Output file r3x_0904_fold_SAVE_ALL_OUT_920537_1458_0_r1563406117_0 for task r3x_0904_fold_SAVE_ALL_OUT_920537_1458_0 absent
12/05/2020 14:16:34 | Rosetta@home | update requested by user
12/05/2020 14:16:39 | Rosetta@home | Sending scheduler request: Requested by user.
12/05/2020 14:16:39 | Rosetta@home | Reporting 2 completed tasks
12/05/2020 14:16:39 | Rosetta@home | Requesting new tasks for CPU
12/05/2020 14:16:42 | Rosetta@home | Scheduler request completed: got 2 new tasks
12/05/2020 14:16:44 | Rosetta@home | Started download of flags_dummy
12/05/2020 14:16:44 | Rosetta@home | Started download of 8CHARACTER_UNIQUENAME_SAVE_ALL_OUT_IGNORE_THE_REST_4qw8of3n.zip
12/05/2020 14:16:46 | Rosetta@home | Finished download of flags_dummy
12/05/2020 14:16:46 | Rosetta@home | Started download of 8CHARACTER_UNIQUENAME_SAVE_ALL_OUT_IGNORE_THE_REST_4qw8of3n.flags
12/05/2020 14:16:47 | Rosetta@home | Finished download of 8CHARACTER_UNIQUENAME_SAVE_ALL_OUT_IGNORE_THE_REST_4qw8of3n.flags
12/05/2020 14:16:47 | Rosetta@home | Started download of fp200511_C2_pair139_X_fnr_9_193_fragments_fold_data.zip
12/05/2020 14:16:55 | Rosetta@home | Finished download of 8CHARACTER_UNIQUENAME_SAVE_ALL_OUT_IGNORE_THE_REST_4qw8of3n.zip
12/05/2020 14:17:06 | Rosetta@home | Finished download of fp200511_C2_pair139_X_fnr_9_193_fragments_fold_data.zip
12/05/2020 14:22:42 | Rosetta@home | Starting task fp200511_C2_pair139_X_fnr_9_193_fragments_abinitio_SAVE_ALL_OUT_927867_682_0
12/05/2020 14:22:50 | Rosetta@home | Computation for task fp200511_C2_pair139_X_fnr_9_193_fragments_abinitio_SAVE_ALL_OUT_927867_682_0 finished
12/05/2020 14:22:50 | Rosetta@home | Output file fp200511_C2_pair139_X_fnr_9_193_fragments_abinitio_SAVE_ALL_OUT_927867_682_0_r1926040998_0 for task fp200511_C2_pair139_X_fnr_9_193_fragments_abinitio_SAVE_ALL_OUT_927867_682_0 absent
12/05/2020 14:22:53 | Rosetta@home | Starting task 8CHARACTER_UNIQUENAME_SAVE_ALL_OUT_IGNORE_THE_REST_4qw8of3n_928224_2_0
12/05/2020 14:23:00 | Rosetta@home | Computation for task 8CHARACTER_UNIQUENAME_SAVE_ALL_OUT_IGNORE_THE_REST_4qw8of3n_928224_2_0 finished
12/05/2020 14:23:00 | Rosetta@home | Output file 8CHARACTER_UNIQUENAME_SAVE_ALL_OUT_IGNORE_THE_REST_4qw8of3n_928224_2_0_r336126669_0 for task 8CHARACTER_UNIQUENAME_SAVE_ALL_OUT_IGNORE_THE_REST_4qw8of3n_928224_2_0 absent
12/05/2020 14:25:24 | Rosetta@home | Sending scheduler request: To fetch work.
12/05/2020 14:25:24 | Rosetta@home | Reporting 2 completed tasks
12/05/2020 14:25:24 | Rosetta@home | Requesting new tasks for CPU
12/05/2020 14:25:26 | Rosetta@home | Scheduler request completed: got 2 new tasks
12/05/2020 14:25:28 | Rosetta@home | Started download of new_3cl_10aa_6lu7_modified_AVLstub_relaxed_renumbered_0674_33_extract_B.zip
12/05/2020 14:25:28 | Rosetta@home | Started download of new_3cl_10aa_6lu7_modified_AVLstub_relaxed_renumbered_0674_33_extract_B.flags
12/05/2020 14:25:30 | Rosetta@home | Finished download of new_3cl_10aa_6lu7_modified_AVLstub_relaxed_renumbered_0674_33_extract_B.zip
12/05/2020 14:25:30 | Rosetta@home | Finished download of new_3cl_10aa_6lu7_modified_AVLstub_relaxed_renumbered_0674_33_extract_B.flags
12/05/2020 14:25:30 | Rosetta@home | Started download of rb_05_11_24048_24276_ab_t000__h002_robetta_FLAGS
12/05/2020 14:25:30 | Rosetta@home | Started download of rb_05_11_24048_24276_ab_t000__h002_robetta.zip
12/05/2020 14:25:33 | Rosetta@home | Starting task new_3cl_10aa_6lu7_modified_AVLstub_relaxed_renumbered_0674_33_extract_B_SAVE_ALL_OUT_928500_1_1
12/05/2020 14:25:34 | Rosetta@home | Finished download of rb_05_11_24048_24276_ab_t000__h002_robetta_FLAGS
12/05/2020 14:25:34 | Rosetta@home | Finished download of rb_05_11_24048_24276_ab_t000__h002_robetta.zip
12/05/2020 14:25:34 | Rosetta@home | Started download of rb_05_11_24048_24276_ab_t000__h002_robetta.200.3mers.index.gz
12/05/2020 14:25:34 | Rosetta@home | Started download of rb_05_11_24048_24276_ab_t000__h002_robetta.200.5mers.index.gz
12/05/2020 14:25:36 | Rosetta@home | Finished download of rb_05_11_24048_24276_ab_t000__h002_robetta.200.3mers.index.gz
12/05/2020 14:25:36 | Rosetta@home | Finished download of rb_05_11_24048_24276_ab_t000__h002_robetta.200.5mers.index.gz
12/05/2020 14:25:39 | Rosetta@home | Starting task rb_05_11_24048_24276_ab_t000__h002_robetta_IGNORE_THE_REST_03_05_927766_1_1
12/05/2020 14:25:49 | Rosetta@home | Computation for task rb_05_11_24048_24276_ab_t000__h002_robetta_IGNORE_THE_REST_03_05_927766_1_1 finished
12/05/2020 14:25:49 | Rosetta@home | Output file rb_05_11_24048_24276_ab_t000__h002_robetta_IGNORE_THE_REST_03_05_927766_1_1_r858648371_0 for task rb_05_11_24048_24276_ab_t000__h002_robetta_IGNORE_THE_REST_03_05_927766_1_1 absent
12/05/2020 14:27:49 | Rosetta@home | Sending scheduler request: To fetch work.
12/05/2020 14:27:49 | Rosetta@home | Reporting 1 completed tasks
12/05/2020 14:27:49 | Rosetta@home | Requesting new tasks for CPU
12/05/2020 14:27:51 | Rosetta@home | Scheduler request completed: got 1 new tasks
12/05/2020 14:27:53 | Rosetta@home | Started download of flags_covid_groove2
12/05/2020 14:27:53 | Rosetta@home | Started download of Mini_Protein_binds_COVID-19_groove_design1_3_SAVE_ALL_OUT_IGNORE_THE_REST_8dv5ad8c.zip
12/05/2020 14:27:55 | Rosetta@home | Finished download of flags_covid_groove2
12/05/2020 14:27:55 | Rosetta@home | Started download of Mini_Protein_binds_COVID-19_groove_design1_3_SAVE_ALL_OUT_IGNORE_THE_REST_8dv5ad8c.flags
12/05/2020 14:27:56 | Rosetta@home | Finished download of Mini_Protein_binds_COVID-19_groove_design1_3_SAVE_ALL_OUT_IGNORE_THE_REST_8dv5ad8c.flags
12/05/2020 14:28:00 | Rosetta@home | Finished download of Mini_Protein_binds_COVID-19_groove_design1_3_SAVE_ALL_OUT_IGNORE_THE_REST_8dv5ad8c.zip
12/05/2020 14:28:48 | Rosetta@home | Computation for task new_3cl_10aa_6lu7_modified_AVLstub_relaxed_renumbered_0674_33_extract_B_SAVE_ALL_OUT_928500_1_1 finished
12/05/2020 14:28:48 | Rosetta@home | Output file new_3cl_10aa_6lu7_modified_AVLstub_relaxed_renumbered_0674_33_extract_B_SAVE_ALL_OUT_928500_1_1_r1150183738_0 for task new_3cl_10aa_6lu7_modified_AVLstub_relaxed_renumbered_0674_33_extract_B_SAVE_ALL_OUT_928500_1_1 absent
12/05/2020 14:28:51 | Rosetta@home | Starting task Mini_Protein_binds_COVID-19_groove_design1_3_SAVE_ALL_OUT_IGNORE_THE_REST_8dv5ad8c_927633_8_0
12/05/2020 14:28:53 | Rosetta@home | Computation for task Mini_Protein_binds_COVID-19_groove_design1_3_SAVE_ALL_OUT_IGNORE_THE_REST_8dv5ad8c_927633_8_0 finished
12/05/2020 14:28:53 | Rosetta@home | Output file Mini_Protein_binds_COVID-19_groove_design1_3_SAVE_ALL_OUT_IGNORE_THE_REST_8dv5ad8c_927633_8_0_r1359986480_0 for task Mini_Protein_binds_COVID-19_groove_design1_3_SAVE_ALL_OUT_IGNORE_THE_REST_8dv5ad8c_927633_8_0 absent
12/05/2020 14:31:28 | Rosetta@home | Sending scheduler request: To fetch work.
12/05/2020 14:31:28 | Rosetta@home | Reporting 2 completed tasks
12/05/2020 14:31:28 | Rosetta@home | Requesting new tasks for CPU
12/05/2020 14:31:31 | Rosetta@home | Scheduler request completed: got 2 new tasks
12/05/2020 14:31:33 | Rosetta@home | Started download of flags_dummy
12/05/2020 14:31:33 | Rosetta@home | Started download of 8CHARACTER_UNIQUENAME_SAVE_ALL_OUT_IGNORE_THE_REST_3gh9pd8e.zip
12/05/2020 14:31:35 | Rosetta@home | Finished download of flags_dummy
12/05/2020 14:31:35 | Rosetta@home | Started download of 8CHARACTER_UNIQUENAME_SAVE_ALL_OUT_IGNORE_THE_REST_3gh9pd8e.flags
12/05/2020 14:31:36 | Rosetta@home | Finished download of 8CHARACTER_UNIQUENAME_SAVE_ALL_OUT_IGNORE_THE_REST_3gh9pd8e.flags
12/05/2020 14:31:36 | Rosetta@home | Started download of r3x_3679_data.zip
12/05/2020 14:31:37 | Rosetta@home | Finished download of r3x_3679_data.zip
12/05/2020 14:31:40 | Rosetta@home | Starting task r3x_3679_fold_SAVE_ALL_OUT_919997_1459_0
12/05/2020 14:31:48 | Rosetta@home | Finished download of 8CHARACTER_UNIQUENAME_SAVE_ALL_OUT_IGNORE_THE_REST_3gh9pd8e.zip
12/05/2020 14:31:50 | Rosetta@home | Starting task 8CHARACTER_UNIQUENAME_SAVE_ALL_OUT_IGNORE_THE_REST_3gh9pd8e_927911_2_0
12/05/2020 14:31:51 | Rosetta@home | Computation for task r3x_3679_fold_SAVE_ALL_OUT_919997_1459_0 finished
12/05/2020 14:31:51 | Rosetta@home | Output file r3x_3679_fold_SAVE_ALL_OUT_919997_1459_0_r460780872_0 for task r3x_3679_fold_SAVE_ALL_OUT_919997_1459_0 absent
12/05/2020 14:31:59 | Rosetta@home | Computation for task 8CHARACTER_UNIQUENAME_SAVE_ALL_OUT_IGNORE_THE_REST_3gh9pd8e_927911_2_0 finished
12/05/2020 14:31:59 | Rosetta@home | Output file 8CHARACTER_UNIQUENAME_SAVE_ALL_OUT_IGNORE_THE_REST_3gh9pd8e_927911_2_0_r529209938_0 for task 8CHARACTER_UNIQUENAME_SAVE_ALL_OUT_IGNORE_THE_REST_3gh9pd8e_927911_2_0 absent
12/05/2020 14:35:52 | Rosetta@home | Sending scheduler request: To fetch work.
12/05/2020 14:35:52 | Rosetta@home | Reporting 2 completed tasks
12/05/2020 14:35:52 | Rosetta@home | Requesting new tasks for CPU
12/05/2020 14:35:55 | Rosetta@home | Scheduler request completed: got 2 new tasks
12/05/2020 14:35:57 | Rosetta@home | Started download of flags_covid_groove2
12/05/2020 14:35:57 | Rosetta@home | Started download of Mini_Protein_binds_COVID-19_groove_design1_8_SAVE_ALL_OUT_IGNORE_THE_REST_4tx4gb5k.zip
12/05/2020 14:35:59 | Rosetta@home | Finished download of flags_covid_groove2
12/05/2020 14:35:59 | Rosetta@home | Started download of Mini_Protein_binds_COVID-19_groove_design1_8_SAVE_ALL_OUT_IGNORE_THE_REST_4tx4gb5k.flags
12/05/2020 14:36:00 | Rosetta@home | Finished download of Mini_Protein_binds_COVID-19_groove_design1_8_SAVE_ALL_OUT_IGNORE_THE_REST_4tx4gb5k.flags
12/05/2020 14:36:00 | Rosetta@home | Started download of fp200511_allo2_pair125_X_fnr_8_042_fragments_fold_data.zip
12/05/2020 14:36:04 | Rosetta@home | Finished download of Mini_Protein_binds_COVID-19_groove_design1_8_SAVE_ALL_OUT_IGNORE_THE_REST_4tx4gb5k.zip
12/05/2020 14:36:07 | Rosetta@home | Starting task Mini_Protein_binds_COVID-19_groove_design1_8_SAVE_ALL_OUT_IGNORE_THE_REST_4tx4gb5k_927640_8_0
12/05/2020 14:36:11 | Rosetta@home | Computation for task Mini_Protein_binds_COVID-19_groove_design1_8_SAVE_ALL_OUT_IGNORE_THE_REST_4tx4gb5k_927640_8_0 finished
12/05/2020 14:36:11 | Rosetta@home | Output file Mini_Protein_binds_COVID-19_groove_design1_8_SAVE_ALL_OUT_IGNORE_THE_REST_4tx4gb5k_927640_8_0_r1031802064_0 for task Mini_Protein_binds_COVID-19_groove_design1_8_SAVE_ALL_OUT_IGNORE_THE_REST_4tx4gb5k_927640_8_0 absent
12/05/2020 14:36:24 | Rosetta@home | Finished download of fp200511_allo2_pair125_X_fnr_8_042_fragments_fold_data.zip
12/05/2020 14:36:27 | Rosetta@home | Starting task fp200511_allo2_pair125_X_fnr_8_042_fragments_abinitio_SAVE_ALL_OUT_927809_693_0
12/05/2020 14:36:34 | Rosetta@home | Computation for task fp200511_allo2_pair125_X_fnr_8_042_fragments_abinitio_SAVE_ALL_OUT_927809_693_0 finished
12/05/2020 14:36:34 | Rosetta@home | Output file fp200511_allo2_pair125_X_fnr_8_042_fragments_abinitio_SAVE_ALL_OUT_927809_693_0_r585054160_0 for task fp200511_allo2_pair125_X_fnr_8_042_fragments_abinitio_SAVE_ALL_OUT_927809_693_0 absent
12/05/2020 14:36:52 | Rosetta@home | work fetch suspended by user
12/05/2020 14:38:53 | Rosetta@home | Sending scheduler request: To report completed tasks.
12/05/2020 14:38:53 | Rosetta@home | Reporting 2 completed tasks
12/05/2020 14:38:53 | Rosetta@home | Not requesting tasks: "no new tasks" requested via Manager
12/05/2020 14:38:55 | Rosetta@home | Scheduler request completed
12/05/2020 18:04:27 | | Suspending computation - CPU is busy
12/05/2020 18:05:37 | | Resuming computation
12/05/2020 18:06:47 | Rosetta@home | work fetch resumed by user
12/05/2020 18:06:50 | Rosetta@home | Sending scheduler request: To fetch work.
12/05/2020 18:06:50 | Rosetta@home | Requesting new tasks for CPU
12/05/2020 18:06:53 | Rosetta@home | Scheduler request completed: got 2 new tasks
12/05/2020 18:06:55 | Rosetta@home | Started download of flags
12/05/2020 18:06:55 | Rosetta@home | Started download of Junior_HalfRoid_design5_COVID-19_SAVE_ALL_OUT_IGNORE_THE_REST_4vi4qx8m.zip
12/05/2020 18:06:57 | Rosetta@home | Finished download of flags
12/05/2020 18:06:57 | Rosetta@home | Started download of Junior_HalfRoid_design5_COVID-19_SAVE_ALL_OUT_IGNORE_THE_REST_4vi4qx8m.flags
12/05/2020 18:06:58 | Rosetta@home | Finished download of Junior_HalfRoid_design5_COVID-19_SAVE_ALL_OUT_IGNORE_THE_REST_4vi4qx8m.zip
12/05/2020 18:06:58 | Rosetta@home | Finished download of Junior_HalfRoid_design5_COVID-19_SAVE_ALL_OUT_IGNORE_THE_REST_4vi4qx8m.flags
12/05/2020 18:06:58 | Rosetta@home | Started download of rb_05_12_24836_24417_ab_t000__robetta_FLAGS
12/05/2020 18:06:58 | Rosetta@home | Started download of rb_05_12_24836_24417_ab_t000__robetta.zip
12/05/2020 18:07:00 | Rosetta@home | Finished download of rb_05_12_24836_24417_ab_t000__robetta_FLAGS
12/05/2020 18:07:00 | Rosetta@home | Finished download of rb_05_12_24836_24417_ab_t000__robetta.zip
12/05/2020 18:07:00 | Rosetta@home | Started download of rb_05_12_24836_24417_ab_t000__robetta.200.3mers.index.gz
12/05/2020 18:07:00 | Rosetta@home | Started download of rb_05_12_24836_24417_ab_t000__robetta.200.10mers.index.gz
12/05/2020 18:07:01 | Rosetta@home | Finished download of rb_05_12_24836_24417_ab_t000__robetta.200.3mers.index.gz
12/05/2020 18:07:01 | Rosetta@home | Finished download of rb_05_12_24836_24417_ab_t000__robetta.200.10mers.index.gz
12/05/2020 18:07:01 | Rosetta@home | Started download of rb_05_12_24836_24417_ab_t000__robetta.200.6mers.index.gz
12/05/2020 18:07:02 | Rosetta@home | Finished download of rb_05_12_24836_24417_ab_t000__robetta.200.6mers.index.gz
12/05/2020 18:07:05 | Rosetta@home | Starting task rb_05_12_24836_24417_ab_t000__robetta_cstwt_5.0_FT_IGNORE_THE_REST_06_10_928596_23_0
12/05/2020 18:07:17 | Rosetta@home | Computation for task rb_05_12_24836_24417_ab_t000__robetta_cstwt_5.0_FT_IGNORE_THE_REST_06_10_928596_23_0 finished
12/05/2020 18:07:17 | Rosetta@home | Output file rb_05_12_24836_24417_ab_t000__robetta_cstwt_5.0_FT_IGNORE_THE_REST_06_10_928596_23_0_r1393946342_0 for task rb_05_12_24836_24417_ab_t000__robetta_cstwt_5.0_FT_IGNORE_THE_REST_06_10_928596_23_0 absent
5) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 94522)
Posted 15 Apr 2020 by Sven
Post:
Most of the error messages occured over night when there was no other work load on the system.

Usually I would say that a project should be able to handle every kind of client setting. Obiously I'm wrong with this opinion.

Due to heavy fan noise I acutally adjusted the settings to "suspend when computer is in use" and I still don't have any more error messages like before when I have reduced the percentage of allowed cpu time.


Addtional information:
As I've freshly downloaded the newest boinc client on this new computer, I'm working with the version 7.16.5 (x64), which doesn't help against the "Task xxxx exited with zero status but no 'finished' file" error.
6) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 94421)
Posted 14 Apr 2020 by Sven
Post:
Hi all,

concerning my problems with this issue:

****
Rosetta@home | Task xxxx exited with zero status but no 'finished' file
Rosetta@home | If this happens repeatedly you may need to reset the project.
*****

... I've got a result of what to do to avoid this kind of error message:

It seems to be recommendable to make sure, that the following setting ist adjusted:
Use at most 100% of CPU time

All other settings, including max usage of CPUs, don't influence the processing of Rosetta tasks.

Sven
7) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 94161)
Posted 11 Apr 2020 by Sven
Post:
Jim, Grant,

I don't see any problems with any other projects with these settings. And as I said, I tried it on several computers. Only Rosetta frequently stops crunching tasks.
The low number of cpu kernels is for reducing the fan speed, which can reach a nerving sound.

But to find out, if any of my settings are the problem, i try and change the settings to more power consumption.
8) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 94144)
Posted 11 Apr 2020 by Sven
Post:
Hi,

I'm facing well known problems with crunching Rosetta tasks.
My Boinc client is freshly installed on a new computer and the Rosetta project added shortly afterwards.

Now I receive again and again error messages that taks are exited with zero status and no finish file, see below. I had the same problem on several other computers in the past. So there seems to be a general problem with Rosetta and not with one certain computer. By the way: Resetting the projects is no help.
That way it makes no sense to continue crunching. It would be waste of time and electric power.

Thanks for your reply. And it would be great, if the project it self could be repaired that such issues can't happen anymore.

Sven


****
10.04.2020 13:23:40 | | cc_config.xml not found - using defaults
10.04.2020 13:23:40 | | Starting BOINC client version 7.16.5 for windows_x86_64
10.04.2020 13:23:40 | | Libraries: libcurl/7.47.1 OpenSSL/1.0.2s zlib/1.2.8
10.04.2020 13:23:40 | | Data directory: C:ProgramDataBOINC
10.04.2020 13:23:40 | | Running under account rothsven
10.04.2020 13:23:42 | | CUDA: NVIDIA GPU 0: Quadro M2200 (driver version 378.98, CUDA version 8.0, compute capability 5.2, 4096MB, 3416MB available, 2122 GFLOPS peak)
10.04.2020 13:23:42 | | OpenCL: NVIDIA GPU 0: Quadro M2200 (driver version 378.98, device version OpenCL 1.2 CUDA, 4096MB, 3416MB available, 2122 GFLOPS peak)
10.04.2020 13:23:42 | | OpenCL: Intel GPU 0: Intel(R) HD Graphics 630 (driver version 21.20.16.4574, device version OpenCL 2.1, 13037MB, 13037MB available, 211 GFLOPS peak)
10.04.2020 13:23:42 | | OpenCL CPU: Intel(R) Core(TM) i7-7820HQ CPU @ 2.90GHz (OpenCL driver vendor: Intel(R) Corporation, driver version 6.8.0.2, device version OpenCL 2.1 (Build 2))
10.04.2020 13:23:42 | | Windows processor group 0: 8 processors
10.04.2020 13:23:42 | | Host name: EAMODLES4PRLNQ2
10.04.2020 13:23:42 | | Processor: 8 GenuineIntel Intel(R) Core(TM) i7-7820HQ CPU @ 2.90GHz [Family 6 Model 158 Stepping 9]
10.04.2020 13:23:42 | | Processor features: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss htt tm pni ssse3 fma cx16 sse4_1 sse4_2 movebe popcnt aes f16c rdrandsyscall nx lm avx avx2 vmx smx tm2 pbe fsgsbase bmi1 hle smep bmi2
10.04.2020 13:23:42 | | OS: Microsoft Windows 10: Enterprise x64 Edition, (10.00.16299.00)
10.04.2020 13:23:42 | | Memory: 31.85 GB physical, 36.60 GB virtual
10.04.2020 13:23:42 | | Disk: 476.03 GB total, 356.30 GB free
10.04.2020 13:23:42 | | Local time is UTC +2 hours
10.04.2020 13:23:42 | | No WSL found.
10.04.2020 13:23:42 | | General prefs: from http://lhcathomeclassic.cern.ch/sixtrack/ (last modified 06-Mar-2015 20:46:54)
10.04.2020 13:23:42 | | Host location: none
10.04.2020 13:23:42 | | General prefs: using your defaults
10.04.2020 13:23:42 | | Reading preferences override file
10.04.2020 13:23:42 | | Preferences:
10.04.2020 13:23:42 | | max memory usage when active: 16305.90 MB
10.04.2020 13:23:42 | | max memory usage when idle: 29350.62 MB
10.04.2020 13:23:43 | | max disk usage: 100.00 GB
10.04.2020 13:23:43 | | max CPUs used: 2
10.04.2020 13:23:43 | | don't compute while active
10.04.2020 13:23:43 | | don't use GPU while active
10.04.2020 13:23:43 | | suspend work if non-BOINC CPU load exceeds 15%
10.04.2020 13:23:43 | | (to change preferences, visit a project web site or select Preferences in the Manager)
10.04.2020 13:23:43 | | Setting up project and slot directories
10.04.2020 13:23:43 | | Checking active tasks
10.04.2020 13:23:43 | climateprediction.net | URL https://climateprediction.net/; Computer ID 1502231; resource share 10
10.04.2020 13:23:43 | Rosetta@home | URL http://boinc.bakerlab.org/rosetta/; Computer ID 4092002; resource share 20
10.04.2020 13:23:43 | | Setting up GUI RPC socket
10.04.2020 13:23:43 | | Checking presence of 14 project files
10.04.2020 13:23:43 | | Suspending network activity - computer is in use
10.04.2020 13:27:04 | | Resuming network activity
10.04.2020 14:22:05 | Rosetta@home | Task hgfp_dimer_5x_373_fold_SAVE_ALL_OUT_907154_43_0 exited with zero status but no 'finished' file
10.04.2020 14:22:05 | Rosetta@home | If this happens repeatedly you may need to reset the project.
10.04.2020 14:50:20 | Rosetta@home | Task hgfp_dimer_5x_373_fold_SAVE_ALL_OUT_907154_43_0 exited with zero status but no 'finished' file
10.04.2020 14:50:20 | Rosetta@home | If this happens repeatedly you may need to reset the project.
10.04.2020 15:21:01 | Rosetta@home | Task hgfp_dimer_5x_373_fold_SAVE_ALL_OUT_907154_43_0 exited with zero status but no 'finished' file
10.04.2020 15:21:01 | Rosetta@home | If this happens repeatedly you may need to reset the project.
10.04.2020 16:35:03 | Rosetta@home | Task hgfp_dimer_5x_373_fold_SAVE_ALL_OUT_907154_43_0 exited with zero status but no 'finished' file
10.04.2020 16:35:03 | Rosetta@home | If this happens repeatedly you may need to reset the project.
10.04.2020 17:31:41 | Rosetta@home | Project requested delay of 7 seconds
10.04.2020 19:23:06 | | Suspending network activity - computer is in use
10.04.2020 19:26:47 | | Resuming network activity
10.04.2020 23:04:58 | | Suspending network activity - computer is in use
10.04.2020 23:09:18 | | Resuming network activity
11.04.2020 02:25:29 | climateprediction.net | No tasks sent
11.04.2020 02:25:29 | climateprediction.net | Project requested delay of 3636 seconds
11.04.2020 02:25:36 | Rosetta@home | Project requested delay of 7 seconds
11.04.2020 02:31:24 | Rosetta@home | No tasks sent
11.04.2020 02:31:24 | Rosetta@home | Project requested delay of 7 seconds
11.04.2020 02:31:36 | Rosetta@home | Project requested delay of 7 seconds
11.04.2020 02:44:52 | Rosetta@home | Task hgfp_dimer_5x_221_fold_SAVE_ALL_OUT_906873_888_0 exited with zero status but no 'finished' file
11.04.2020 02:44:52 | Rosetta@home | If this happens repeatedly you may need to reset the project.
11.04.2020 03:24:33 | Rosetta@home | Task hgfp_monomer_54_fold_SAVE_ALL_OUT_906079_885_0 exited with zero status but no 'finished' file
11.04.2020 03:24:33 | Rosetta@home | If this happens repeatedly you may need to reset the project.
11.04.2020 04:14:30 | Rosetta@home | Task hgfp_monomer_54_fold_SAVE_ALL_OUT_906079_885_0 exited with zero status but no 'finished' file
11.04.2020 04:14:30 | Rosetta@home | If this happens repeatedly you may need to reset the project.
11.04.2020 06:42:26 | Rosetta@home | Task hgfp_dimer_5x_221_fold_SAVE_ALL_OUT_906873_888_0 exited with zero status but no 'finished' file
11.04.2020 06:42:26 | Rosetta@home | If this happens repeatedly you may need to reset the project.
11.04.2020 06:45:33 | Rosetta@home | Task hgfp_monomer_54_fold_SAVE_ALL_OUT_906079_885_0 exited with zero status but no 'finished' file
11.04.2020 06:45:33 | Rosetta@home | If this happens repeatedly you may need to reset the project.
11.04.2020 08:24:54 | Rosetta@home | Task hgfp_monomer_54_fold_SAVE_ALL_OUT_906079_885_0 exited with zero status but no 'finished' file
11.04.2020 08:24:54 | Rosetta@home | If this happens repeatedly you may need to reset the project.
11.04.2020 09:53:15 | Rosetta@home | Task hgfp_monomer_54_fold_SAVE_ALL_OUT_906079_885_0 exited with zero status but no 'finished' file
11.04.2020 09:53:15 | Rosetta@home | If this happens repeatedly you may need to reset the project.
11.04.2020 11:33:00 | | Suspending network activity - computer is in use
*******






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