Posts by barius

1) Questions and Answers : Unix/Linux : Can't run rosetta mini, reports “minirosetta_database.zip does not exist” (Message 90504) Posted 11 Mar 2019 by barius Post: I have access to a remote Centos 7 server which have Dual Intel 4114 CPU. When I ran rosetta I noticed all rosetta mini tasks failed in ~3 seconds. Looking into the logs I found a file named minirosetta_database.zip cannot be found by the program. This file is just under the task directory, e.g. slots/10, but with 107bytes in size. The error log is attached below: ··· <core_client_version>7.2.42</core_client_version> <![CDATA[ <message> process exited with code 1 (0x1, -255) </message> <stderr_txt> [2019- 3-10 13:31:39:] :: BOINC:: Initializing ... ok. [2019- 3-10 13:31:39:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. command: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_3.78_x86_64-pc-linux-gnu -abinitio::fastrelax 1 -ex2aro 1 -frag3 00001.200.3mers -in:file:native 00001.pdb -silent_gz 1 -frag9 00001.200.9mers -out:file:silent default.out -ex1 1 -abinitio::rsd_wt_loop 0.5 -relax::default_repeats 5 -abinitio::use_filters false -abinitio::increase_cycles 10 -abinitio::rsd_wt_helix 0.5 -beta 1 -abinitio::rg_reweight 0.5 -in:file:boinc_wu_zip 3gb1_azido2_data.zip -out:file:silent default.out -silent_gz -mute all -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2961870 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... ERROR: in::file::zip minirosetta_database.zip does not exist! ERROR:: Exit from: src/apps/public/boinc/minirosetta.cc line: 195 [0xdc5adaa] [0x8056003] [0xdf0cfd8] [0x8048131] BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish </stderr_txt> ]]> ···