21)
Message boards :
Number crunching :
Problems and Technical Issues with Rosetta@home
(Message 97171)
Posted 2 Jun 2020 by manalog Post: It is not the first time that I see in the stderr of the completed workunit error messages like this: Error in `../../projects/boinc.bakerlab.org_rosetta/rosetta_4.20_x86_64-pc-linux-gnu': free(): invalid pointer: 0x00000000067bd783 Nonetheless, at the end of the stderr there is the number of decoys computed, example: ====================================================== DONE :: 1 starting structures 7183.36 cpu seconds This process generated 38 decoys from 38 attempts ====================================================== And credits are given. The problematic WUs of today were: dongrz_42_42_out_file_0527_d1a75a_4AS_pb_ASW0_TERM14_length60_0095_fragments_abinitio_SAVE_ALL_OUT_942476_1285_0 and f833377c4525b0718d971c3d5b05283b_fold_SAVE_ALL_OUT_939475_49_0 All the others computed by this host today were free of error. Are the results still useful or will they be discarded? I do not want to waste computing power, so if my old laptop is the problem (Intel T7250, 4GB Ram, year 2007) i will use it for other projects where it does not give any error. Thank you. |
22)
Message boards :
Rosetta@home Science :
Two less known DC-projects working on Sars-Cov2
(Message 96589)
Posted 17 May 2020 by manalog Post: Hello, I'd like to share also here a post I published on World Community Grid's forum, perhaps it can be useful also here:
This is the link to the original post: https://www.worldcommunitygrid.org/forums/wcg/viewthread_thread,42403 Let me know if it can be useful here :) Cheers, good job! |
23)
Message boards :
Cafe Rosetta :
Older MOBO's with processors to donate (EU/UK Only)
(Message 96481)
Posted 14 May 2020 by manalog Post: Hi, I don't know if you still have the computers after a year. In case, I am interested in the Ryzen machine. It would be used h24 to crunch on Boinc projects. I live in Italy; it's a pity I didn't read your message a year ago because I was doing an Erasmus in Leven and I also had a car :( let me know! |
24)
Message boards :
Number crunching :
All tasks failed : finish file present too long
(Message 95367)
Posted 25 Apr 2020 by manalog Post: I am facing the same problem of Raistmer,: a "warming up" lasting several minutes (30-40) before tasks start. I dedicated a Xeon L5420 24/24 on Rosetta but I do not have an hard disk to use and so its only storage unity is a 16GB thumb drive (USB 2.0). I was thinking too about the Ram disk: which are the files Rosetta needs to access more frequently? If they are, let's say, 400MB big, then we could move them on a ram disk without problems. totale 727M -rwxr-xr-x 1 boinc boinc 485M apr 23 19:23 database_357d5d93529_n_methyl.zip -rw-r--r-- 1 boinc boinc 701 apr 25 21:17 flags_il6r3 -rw-r--r-- 1 boinc boinc 343 apr 25 22:11 jgHE_b02_COVID-19_SAVE_ALL_OUT_IGNORE_THE_REST_2qo6vn6b.flags -rw-r--r-- 1 boinc boinc 151K apr 25 22:11 jgHE_b02_COVID-19_SAVE_ALL_OUT_IGNORE_THE_REST_2qo6vn6b.zip -rw-r--r-- 1 boinc boinc 12 apr 25 22:11 jgHE_b02.flags -rwxr-xr-x 1 boinc boinc 345K apr 23 19:13 LiberationSans-Regular.ttf -rw-r--r-- 1 boinc boinc 3,9K apr 25 22:11 Mini_Protein_binds_IL6R_COVID-19_1p9m_v2_0_SAVE_ALL_OUT_IGNORE_THE_REST_9iu9zq9t.flags -rw-r--r-- 1 boinc boinc 1,9M apr 25 22:11 Mini_Protein_binds_IL6R_COVID-19_1p9m_v2_0_SAVE_ALL_OUT_IGNORE_THE_REST_9iu9zq9t.zip -rw-r--r-- 1 boinc boinc 3,0K apr 25 21:21 Mini_Protein_binds_IL6R_COVID-19_1p9m_v2_4_SAVE_ALL_OUT_IGNORE_THE_REST_0pa6ea9e.flags -rw-r--r-- 1 boinc boinc 1,8M apr 25 21:20 Mini_Protein_binds_IL6R_COVID-19_1p9m_v2_4_SAVE_ALL_OUT_IGNORE_THE_REST_0pa6ea9e.zip -rw-r--r-- 1 boinc boinc 170K apr 25 21:21 r3x_3934_data.zip -rw-r--r-- 1 boinc boinc 181K apr 25 22:10 r4k_11675_data.zip -rw-r--r-- 1 boinc boinc 177K apr 25 22:11 r4k_13116_data.zip -rwxr-xr-x 1 boinc boinc 120M apr 23 19:15 rosetta_4.15_x86_64-pc-linux-gnu -rwxr-xr-x 1 boinc boinc 118M apr 25 21:24 rosetta_graphics_4.15_x86_64-pc-linux-gnu Is the database the one that causes trouble? How often is the database file updated? |
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