Posts by hedera

21) Message boards : Number crunching : minirosetta v1.24 bug thread (Message 53391)
Posted 27 May 2008 by Profile hedera
Post:
Since yesterday's post of six (count them) MiniRosetta crashes, I've accumulated 2 more. These, annoyingly, look as if they ran, but then crashed on exiting; there's an error somewhere in "boinc_finish".

===============================================================================
TASK 166534220 WU 152032025 Rosetta Mini 1.24 d110a_BOINC_CASP8_ABRELAX_t405_IGNORE_THE_REST-S25-5-S3-4--d110a-_3558_86

<core_client_version>5.10.20</core_client_version>
<![CDATA[
<stderr_txt>
======================================================
DONE :: 1 starting structures 10122 cpu seconds
This process generated 2 decoys from 2 attempts
======================================================

BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...
called boinc_finish

</stderr_txt>
<message>
<file_xfer_error>
<file_name>d110a_BOINC_CASP8_ABRELAX_t405_IGNORE_THE_REST-S25-5-S3-4--d110a-_3558_86_0_0</file_name>
<error_code>-161</error_code>
</file_xfer_error>

</message>
]]>

=================================================================================

TASK 166535720 WU 152032406 Rosetta Mini 1.24 d010a_BOINC_CASP8_ABRELAX_t405_IGNORE_THE_REST-S25-9-S3-5--d010a-_3558_295

<core_client_version>5.10.20</core_client_version>
<![CDATA[
<stderr_txt>
======================================================
DONE :: 1 starting structures 10963.9 cpu seconds
This process generated 5 decoys from 5 attempts
======================================================

BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...
called boinc_finish

</stderr_txt>
<message>
<file_xfer_error>
<file_name>d010a_BOINC_CASP8_ABRELAX_t405_IGNORE_THE_REST-S25-9-S3-5--d010a-_3558_295_0_0</file_name>
<error_code>-161</error_code>
</file_xfer_error>

</message>
]]>

======================================================================================
22) Message boards : Number crunching : minirosetta v1.24 bug thread (Message 53342)
Posted 26 May 2008 by Profile hedera
Post:
I've had 5 WUs crash (6, actually, another one died while I was writing this post; it's at the bottom) this week on Minirosetta 1.24; the crashes began on 5/22. This is very unusual, my WUs normally run like clocks:

TASK 165623086 WU 151371156 Rosetta Mini 1.24 t0391_BOINC_LOOP_IGNORE_THE_REST-S25-10-S3-5--1a19A-_3424_100

produced this error:

<core_client_version>5.10.20</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
ERROR: Option matching -description_file not found in command line top-level context

</stderr_txt>
]]>

==============================================================================

TASK 165945454 WU 151638420 Rosetta Mini 1.24 t0391_BOINC_LOOP_IGNORE_THE_REST-S25-10-S3-5--1a19A-_3528_374

produced this:

<core_client_version>5.10.20</core_client_version>
<![CDATA[
<stderr_txt>
WARNING: Override of option -out:nstruct sets a different value
sequence mismatch between pose and psipred_ss2 S vs � at seqpos 1
sequence mismatch between pose and psipred_ss2 S vs � at seqpos 1
sequence mismatch between pose and psipred_ss2 S vs � at seqpos 1
sequence mismatch between pose and psipred_ss2 S vs � at seqpos 1
sequence mismatch between pose and psipred_ss2 S vs � at seqpos 1
sequence mismatch between pose and psipred_ss2 S vs � at seqpos 1
sequence mismatch between pose and psipred_ss2 S vs � at seqpos 1
sequence mismatch between pose and psipred_ss2 S vs � at seqpos 1
sequence mismatch between pose and psipred_ss2 S vs � at seqpos 1
sequence mismatch between pose and psipred_ss2 S vs � at seqpos 1
sequence mismatch between pose and psipred_ss2 S vs � at seqpos 1
sequence mismatch between pose and psipred_ss2 S vs � at seqpos 1
WARNING: Override of option -out:nstruct sets a different value
sequence mismatch between pose and psipred_ss2 S vs � at seqpos 1
======================================================
DONE :: 1 starting structures 9187.89 cpu seconds
This process generated 1 decoys from 1 attempts
======================================================

BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...
called boinc_finish

</stderr_txt>
]]>

==========================================================================

TASK 165485299 WU 151257975 Rosetta Mini 1.24 t0391_BOINC_LOOP_IGNORE_THE_REST-S25-10-S3-5--1a19A-_3364_42

Error message:

<core_client_version>5.10.20</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
ERROR: Option matching -description_file not found in command line top-level context

</stderr_txt>
]]>

=============================================================================

TASK 166259483 WU 151914248 Rosetta Mini 1.24 h002__BOINC_ABRELAXt407__IGNORE_THE_REST-S25-4-S3-3--h002_-_3340_716

Produced a really spectacular error:

<core_client_version>5.10.20</core_client_version>
<![CDATA[
<message>
- exit code -1073741819 (0xc0000005)
</message>
<stderr_txt>


Unhandled Exception Detected...

- Unhandled Exception Record -
Reason: Access Violation (0xc0000005) at address 0x004484E8 read attempt to address 0x011E6000

Engaging BOINC Windows Runtime Debugger...



********************


BOINC Windows Runtime Debugger Version 6.3.2


Dump Timestamp : 05/24/08 21:59:15
Loaded Library : C:Program FilesBOINCdbghelp.dll
Loaded Library : C:Program FilesBOINCsymsrv.dll
Loaded Library : C:Program FilesBOINCsrcsrv.dll
LoadLibraryA( C:Program FilesBOINCversion.dll ): GetLastError = 126
Loaded Library : version.dll
Debugger Engine : 4.0.5.0
Symbol Search Path: C:Program FilesBOINCslots1;C:Program FilesBOINCprojectsboinc.bakerlab.org_rosetta;srv*C:DOCUME~1KARENI~1LOCALS~1Tempsymbols*http://msdl.microsoft.com/download/symbols;srv*C:DOCUME~1KARENI~1LOCALS~1Tempsymbols*http://boinc.bakerlab.org/rosetta/symstore;srv*C:DOCUME~1KARENI~1LOCALS~1Tempsymbols*http://boinc.berkeley.edu/symstore


ModLoad: 00400000 006d7000 C:Program FilesBOINCprojectsboinc.bakerlab.org_rosettaminirosetta_1.24_windows_intelx86.exe (-nosymbols- Symbols Loaded)
Linked PDB Filename :

ModLoad: 7c900000 000b0000 C:WINDOWSsystem32ntdll.dll (5.1.2600.2180) (PDB Symbols Loaded)
Linked PDB Filename : ntdll.pdb
File Version : 5.1.2600.2180 (xpsp_sp2_rtm.040803-2158)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 5.1.2600.2180

ModLoad: 7c800000 000f5000 C:WINDOWSsystem32kernel32.dll (5.1.2600.3119) (PDB Symbols Loaded)
Linked PDB Filename : kernel32.pdb
File Version : 5.1.2600.3119 (xpsp_sp2_gdr.070416-1301)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 5.1.2600.3119

ModLoad: 77dd0000 0009b000 C:WINDOWSsystem32ADVAPI32.dll (5.1.2600.2180) (PDB Symbols Loaded)
Linked PDB Filename : advapi32.pdb
File Version : 5.1.2600.2180 (xpsp_sp2_rtm.040803-2158)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 5.1.2600.2180

ModLoad: 77e70000 00091000 C:WINDOWSsystem32RPCRT4.dll (5.1.2600.3173) (PDB Symbols Loaded)
Linked PDB Filename : rpcrt4.pdb
File Version : 5.1.2600.3173 (xpsp_sp2_qfe.070709-0052)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 5.1.2600.3173

ModLoad: 7e410000 00090000 C:WINDOWSsystem32USER32.dll (5.1.2600.3099) (PDB Symbols Loaded)
Linked PDB Filename : user32.pdb
File Version : 5.1.2600.3099 (xpsp_sp2_gdr.070308-0222)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 5.1.2600.3099

ModLoad: 77f10000 00047000 C:WINDOWSsystem32GDI32.dll (5.1.2600.3316) (PDB Symbols Loaded)
Linked PDB Filename : gdi32.pdb
File Version : 5.1.2600.3316 (xpsp_sp2_gdr.080219-1316)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 5.1.2600.3316

ModLoad: 5cb70000 00026000 C:WINDOWSsystem32ShimEng.dll (5.1.2600.2180) (PDB Symbols Loaded)
Linked PDB Filename : ShimEng.pdb
File Version : 5.1.2600.2180 (xpsp_sp2_rtm.040803-2158)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 5.1.2600.2180

ModLoad: 6f880000 001ca000 C:WINDOWSAppPatchAcGenral.DLL (5.1.2600.2180) (PDB Symbols Loaded)
Linked PDB Filename : AcGenral.pdb
File Version : 5.1.2600.2180 (xpsp_sp2_rtm.040803-2158)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 5.1.2600.2180

ModLoad: 76b40000 0002d000 C:WINDOWSsystem32WINMM.dll (5.1.2600.2180) (PDB Symbols Loaded)
Linked PDB Filename : winmm.pdb
File Version : 5.1.2600.2180 (xpsp_sp2_rtm.040803-2158)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 5.1.2600.2180

ModLoad: 774e0000 0013d000 C:WINDOWSsystem32ole32.dll (5.1.2600.2726) (PDB Symbols Loaded)
Linked PDB Filename : ole32.pdb
File Version : 5.1.2600.2726 (xpsp_sp2_gdr.050725-1528)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 5.1.2600.2726

ModLoad: 77c10000 00058000 C:WINDOWSsystem32msvcrt.dll (7.0.2600.2180) (PDB Symbols Loaded)
Linked PDB Filename : msvcrt.pdb
File Version : 7.0.2600.2180 (xpsp_sp2_rtm.040803-2158)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 7.0.2600.2180

Get Product Name Failed.
ModLoad: 77120000 0008b000 C:WINDOWSsystem32OLEAUT32.dll (5.1.2600.3266) (PDB Symbols Loaded)
Linked PDB Filename : oleaut32.pdb
File Version : 5.1.2600.3266
Company Name : Microsoft Corporation
Product Name :
Product Version : 5.1.2600.3266

ModLoad: 77be0000 00015000 C:WINDOWSsystem32MSACM32.dll (5.1.2600.2180) (PDB Symbols Loaded)
Linked PDB Filename : msacm32.pdb
File Version : 5.1.2600.2180 (xpsp_sp2_rtm.040803-2158)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 5.1.2600.2180

ModLoad: 77c00000 00008000 C:WINDOWSsystem32VERSION.dll (5.1.2600.2180) (PDB Symbols Loaded)
Linked PDB Filename : version.pdb
File Version : 5.1.2600.2180 (xpsp_sp2_rtm.040803-2158)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 5.1.2600.2180

ModLoad: 7c9c0000 00817000 C:WINDOWSsystem32SHELL32.dll (6.0.2900.3241) (PDB Symbols Loaded)
Linked PDB Filename : shell32.pdb
File Version : 6.00.2900.3241 (xpsp_sp2_qfe.071025-1245)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 6.00.2900.3241

ModLoad: 77f60000 00076000 C:WINDOWSsystem32SHLWAPI.dll (6.0.2900.2995) (PDB Symbols Loaded)
Linked PDB Filename : shlwapi.pdb
File Version : 6.00.2900.2995 (xpsp.060913-0019)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 6.00.2900.2995

ModLoad: 769c0000 000b3000 C:WINDOWSsystem32USERENV.dll (5.1.2600.2180) (PDB Symbols Loaded)
Linked PDB Filename : userenv.pdb
File Version : 5.1.2600.2180 (xpsp_sp2_rtm.040803-2158)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 5.1.2600.2180

ModLoad: 5ad70000 00038000 C:WINDOWSsystem32UxTheme.dll (6.0.2900.2180) (PDB Symbols Loaded)
Linked PDB Filename : uxtheme.pdb
File Version : 6.00.2900.2180 (xpsp_sp2_rtm.040803-2158)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 6.00.2900.2180

ModLoad: 76390000 0001d000 C:WINDOWSsystem32IMM32.DLL (5.1.2600.2180) (PDB Symbols Loaded)
Linked PDB Filename : imm32.pdb
File Version : 5.1.2600.2180 (xpsp_sp2_rtm.040803-2158)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 5.1.2600.2180

ModLoad: 5cd70000 00007000 C:WINDOWSsystem32serwvdrv.dll (5.1.2600.0) (PDB Symbols Loaded)
Linked PDB Filename : serwvdrv.pdb
File Version : 5.1.2600.0 (xpclient.010817-1148)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 5.1.2600.0

ModLoad: 5b0a0000 00007000 C:WINDOWSsystem32umdmxfrm.dll (5.1.2600.0) (PDB Symbols Loaded)
Linked PDB Filename : umdmxfrm.pdb
File Version : 5.1.2600.0 (xpclient.010817-1148)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 5.1.2600.0

ModLoad: 773d0000 00103000 C:WINDOWSWinSxSx86_Microsoft.Windows.Common-Controls_6595b64144ccf1df_6.0.2600.2982_x-ww_ac3f9c03comctl32.dll (6.0.2900.2982) (PDB Symbols Loaded)
Linked PDB Filename : MicrosoftWindowsCommon-Controls-6.0.2600.2982-comctl32.pdb
File Version : 6.0 (xpsp.060825-0040)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 6.00.2900.2982

ModLoad: 5d090000 0009a000 C:WINDOWSsystem32comctl32.dll (5.82.2900.2982) (PDB Symbols Loaded)
Linked PDB Filename : comctl32.pdb
File Version : 5.82 (xpsp.060825-0040)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 6.00.2900.2982

ModLoad: 77690000 00021000 C:WINDOWSsystem32NTMARTA.DLL (5.1.2600.2180) (PDB Symbols Loaded)
Linked PDB Filename : ntmarta.pdb
File Version : 5.1.2600.2180 (xpsp_sp2_rtm.040803-2158)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 5.1.2600.2180

ModLoad: 76f60000 0002c000 C:WINDOWSsystem32WLDAP32.dll (5.1.2600.2180) (PDB Symbols Loaded)
Linked PDB Filename : wldap32.pdb
File Version : 5.1.2600.2180 (xpsp_sp2_rtm.040803-2158)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 5.1.2600.2180

ModLoad: 71bf0000 00013000 C:WINDOWSsystem32SAMLIB.dll (5.1.2600.2180) (PDB Symbols Loaded)
Linked PDB Filename : samlib.pdb
File Version : 5.1.2600.2180 (xpsp_sp2_rtm.040803-2158)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 5.1.2600.2180

ModLoad: 03000000 00115000 C:Program FilesBOINCdbghelp.dll (6.6.7.5) (PDB Symbols Loaded)
Linked PDB Filename : dbghelp.pdb
File Version : 6.6.0007.5 (debuggers(dbg).051021-1446)
Company Name : Microsoft Corporation
Product Name : Debugging Tools for Windows(R)
Product Version : 6.6.0007.5

ModLoad: 01d00000 00083000 C:Program FilesBOINCsymsrv.dll (6.6.7.5) (PDB Symbols Loaded)
Linked PDB Filename : symsrv.pdb
File Version : 6.6.0007.5 (debuggers(dbg).051021-1446)
Company Name : Microsoft Corporation
Product Name : Debugging Tools for Windows(R)
Product Version : 6.6.0007.5

ModLoad: 01080000 0003a000 C:Program FilesBOINCsrcsrv.dll (6.6.7.5) (PDB Symbols Loaded)
Linked PDB Filename : srcsrv.pdb
File Version : 6.6.0007.5 (debuggers(dbg).051021-1446)
Company Name : Microsoft Corporation
Product Name : Debugging Tools for Windows(R)
Product Version : 6.6.0007.5



*** Dump of the Process Statistics: ***

- I/O Operations Counters -
Read: 8, Write: 0, Other 209

- I/O Transfers Counters -
Read: 0, Write: 3418, Other 0

- Paged Pool Usage -
QuotaPagedPoolUsage: 72644, QuotaPeakPagedPoolUsage: 84820
QuotaNonPagedPoolUsage: 2912, QuotaPeakNonPagedPoolUsage: 3696

- Virtual Memory Usage -
VirtualSize: 44621824, PeakVirtualSize: 44625920

- Pagefile Usage -
PagefileUsage: 11259904, PeakPagefileUsage: 11259904

- Working Set Size -
WorkingSetSize: 11288576, PeakWorkingSetSize: 11288576, PageFaultCount: 2796

*** Dump of thread ID 6492 (state: Ready): ***

- Information -
Status: Base Priority: Above Normal, Priority: Above Normal, , Kernel Time: 1718750.000000, User Time: 5156250.000000, Wait Time: 3132649.000000

- Unhandled Exception Record -
Reason: Access Violation (0xc0000005) at address 0x004484E8 read attempt to address 0x011E6000

- Registers -
eax=01560e02 ebx=0157a008 ecx=00000000 edx=00000001 esi=011e5ffc edi=011e6000
eip=004484e8 esp=0013ed18 ebp=0013ed38
cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00010202

- Callstack -
ChildEBP RetAddr Args to Child
0013ed38 00448669 0157a008 00000001 011e5ffc 00000004 minirosetta_1.24_windows_intelx!+0x0
0013ed50 00445a06 00000004 011e5ff0 90ae1565 011d41e0 minirosetta_1.24_windows_intelx!+0x0
0013ed8c 0044656d 00000000 00000000 011d5068 011d41e0 minirosetta_1.24_windows_intelx!+0x0
00000000 00000000 00000000 00000000 00000000 00000000 minirosetta_1.24_windows_intelx!+0x0

*** Dump of thread ID 6524 (state: Waiting): ***

- Information -
Status: Wait Reason: ExecutionDelay, , Kernel Time: 156250.000000, User Time: 0.000000, Wait Time: 3132647.000000

- Registers -
eax=0152fb44 ebx=00000000 ecx=90bdf801 edx=00000000 esi=00000000 edi=0152ff70
eip=7c90eb94 esp=0152ff40 ebp=0152ff98
cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00000202

- Callstack -
ChildEBP RetAddr Args to Child
0152ff3c 7c90d85c 7c8023ed 00000000 0152ff70 00000000 ntdll!_KiFastSystemCallRet@0+0x0 FPO: [0,0,0]
0152ff40 7c8023ed 00000000 0152ff70 00000000 7c802442 ntdll!_NtDelayExecution@8+0x0 FPO: [2,0,0]
0152ff98 7c802451 00000064 00000000 0152ffec 0042945b kernel32!_SleepEx@8+0x0
0152ffa8 0042945b 00000064 00000000 7c80b683 00000000 kernel32!_Sleep@4+0x0
0152ffec 00000000 00429450 00000000 00000000 00000008 minirosetta_1.24_windows_intelx!+0x0


*** Debug Message Dump ****


*** Foreground Window Data ***
Window Name :
Window Class :
Window Process ID: 0
Window Thread ID : 0

Exiting...

</stderr_txt>
]]>

=============================================================================

TASK 166469720 WU 151740958 Rosetta Mini 1.24 h002__BOINC_ABRELAX_IGNORE_THE_REST-S25-13-S3-8--h002_-_3266_215

This WU actually ran twice and crashed both times with the same error:

<core_client_version>5.10.20</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>

ERROR: in::file::zip minirosetta_database_rev21566.zip does not exist!
ERROR:: Exit from: ....srcappspublicboincminirosetta.cc line: 91
called boinc_finish

</stderr_txt>
]]>

===========================================================================
Actually, while I was writing this up, another WU crashed:

TASK 166500823 WU 152002122 Rosetta Mini 1.24 t0391_CASP8_BOINC_LOOP_IGNORE_THE_REST-S25-10-S3-5--1a19A-_3565_946

With another dump:

<core_client_version>5.10.20</core_client_version>
<![CDATA[
<message>
- exit code -1073741819 (0xc0000005)
</message>
<stderr_txt>
WARNING: Override of option -out:nstruct sets a different value
9 10000
3 9
1 3


Unhandled Exception Detected...

- Unhandled Exception Record -
Reason: Access Violation (0xc0000005) at address 0x006F8BD0 read attempt to address 0x00000000

Engaging BOINC Windows Runtime Debugger...



********************


BOINC Windows Runtime Debugger Version 6.3.2


Dump Timestamp : 05/25/08 21:08:02
Loaded Library : C:Program FilesBOINC\dbghelp.dll
Loaded Library : C:Program FilesBOINC\symsrv.dll
Loaded Library : C:Program FilesBOINC\srcsrv.dll
LoadLibraryA( C:Program FilesBOINC\version.dll ): GetLastError = 126
Loaded Library : version.dll
Debugger Engine : 4.0.5.0
Symbol Search Path: C:Program FilesBOINCslots1;C:Program FilesBOINCprojectsboinc.bakerlab.org_rosetta;srv*C:DOCUME~1KARENI~1LOCALS~1Tempsymbols*http://msdl.microsoft.com/download/symbols;srv*C:DOCUME~1KARENI~1LOCALS~1Tempsymbols*http://boinc.berkeley.edu/symstore


ModLoad: 00400000 004f5000 C:Program FilesBOINCprojectsboinc.bakerlab.org_rosettaminirosetta_1.25_windows_intelx86.exe (-nosymbols- Symbols Loaded)
Linked PDB Filename :

ModLoad: 7c900000 000b0000 C:WINDOWSsystem32ntdll.dll (5.1.2600.2180) (PDB Symbols Loaded)
Linked PDB Filename : ntdll.pdb
File Version : 5.1.2600.2180 (xpsp_sp2_rtm.040803-2158)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 5.1.2600.2180

ModLoad: 7c800000 000f5000 C:WINDOWSsystem32kernel32.dll (5.1.2600.3119) (PDB Symbols Loaded)
Linked PDB Filename : kernel32.pdb
File Version : 5.1.2600.3119 (xpsp_sp2_gdr.070416-1301)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 5.1.2600.3119

ModLoad: 77dd0000 0009b000 C:WINDOWSsystem32ADVAPI32.dll (5.1.2600.2180) (PDB Symbols Loaded)
Linked PDB Filename : advapi32.pdb
File Version : 5.1.2600.2180 (xpsp_sp2_rtm.040803-2158)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 5.1.2600.2180

ModLoad: 77e70000 00091000 C:WINDOWSsystem32RPCRT4.dll (5.1.2600.3173) (PDB Symbols Loaded)
Linked PDB Filename : rpcrt4.pdb
File Version : 5.1.2600.3173 (xpsp_sp2_qfe.070709-0052)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 5.1.2600.3173

ModLoad: 7e410000 00090000 C:WINDOWSsystem32USER32.dll (5.1.2600.3099) (PDB Symbols Loaded)
Linked PDB Filename : user32.pdb
File Version : 5.1.2600.3099 (xpsp_sp2_gdr.070308-0222)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 5.1.2600.3099

ModLoad: 77f10000 00047000 C:WINDOWSsystem32GDI32.dll (5.1.2600.3316) (PDB Symbols Loaded)
Linked PDB Filename : gdi32.pdb
File Version : 5.1.2600.3316 (xpsp_sp2_gdr.080219-1316)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 5.1.2600.3316

ModLoad: 5cb70000 00026000 C:WINDOWSsystem32ShimEng.dll (5.1.2600.2180) (PDB Symbols Loaded)
Linked PDB Filename : ShimEng.pdb
File Version : 5.1.2600.2180 (xpsp_sp2_rtm.040803-2158)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 5.1.2600.2180

ModLoad: 6f880000 001ca000 C:WINDOWSAppPatchAcGenral.DLL (5.1.2600.2180) (PDB Symbols Loaded)
Linked PDB Filename : AcGenral.pdb
File Version : 5.1.2600.2180 (xpsp_sp2_rtm.040803-2158)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 5.1.2600.2180

ModLoad: 76b40000 0002d000 C:WINDOWSsystem32WINMM.dll (5.1.2600.2180) (PDB Symbols Loaded)
Linked PDB Filename : winmm.pdb
File Version : 5.1.2600.2180 (xpsp_sp2_rtm.040803-2158)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 5.1.2600.2180

ModLoad: 774e0000 0013d000 C:WINDOWSsystem32ole32.dll (5.1.2600.2726) (PDB Symbols Loaded)
Linked PDB Filename : ole32.pdb
File Version : 5.1.2600.2726 (xpsp_sp2_gdr.050725-1528)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 5.1.2600.2726

ModLoad: 77c10000 00058000 C:WINDOWSsystem32msvcrt.dll (7.0.2600.2180) (PDB Symbols Loaded)
Linked PDB Filename : msvcrt.pdb
File Version : 7.0.2600.2180 (xpsp_sp2_rtm.040803-2158)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 7.0.2600.2180

Get Product Name Failed.
ModLoad: 77120000 0008b000 C:WINDOWSsystem32OLEAUT32.dll (5.1.2600.3266) (PDB Symbols Loaded)
Linked PDB Filename : oleaut32.pdb
File Version : 5.1.2600.3266
Company Name : Microsoft Corporation
Product Name :
Product Version : 5.1.2600.3266

ModLoad: 77be0000 00015000 C:WINDOWSsystem32MSACM32.dll (5.1.2600.2180) (PDB Symbols Loaded)
Linked PDB Filename : msacm32.pdb
File Version : 5.1.2600.2180 (xpsp_sp2_rtm.040803-2158)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 5.1.2600.2180

ModLoad: 77c00000 00008000 C:WINDOWSsystem32VERSION.dll (5.1.2600.2180) (PDB Symbols Loaded)
Linked PDB Filename : version.pdb
File Version : 5.1.2600.2180 (xpsp_sp2_rtm.040803-2158)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 5.1.2600.2180

ModLoad: 7c9c0000 00817000 C:WINDOWSsystem32SHELL32.dll (6.0.2900.3241) (PDB Symbols Loaded)
Linked PDB Filename : shell32.pdb
File Version : 6.00.2900.3241 (xpsp_sp2_qfe.071025-1245)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 6.00.2900.3241

ModLoad: 77f60000 00076000 C:WINDOWSsystem32SHLWAPI.dll (6.0.2900.2995) (PDB Symbols Loaded)
Linked PDB Filename : shlwapi.pdb
File Version : 6.00.2900.2995 (xpsp.060913-0019)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 6.00.2900.2995

ModLoad: 769c0000 000b3000 C:WINDOWSsystem32USERENV.dll (5.1.2600.2180) (PDB Symbols Loaded)
Linked PDB Filename : userenv.pdb
File Version : 5.1.2600.2180 (xpsp_sp2_rtm.040803-2158)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 5.1.2600.2180

ModLoad: 5ad70000 00038000 C:WINDOWSsystem32UxTheme.dll (6.0.2900.2180) (PDB Symbols Loaded)
Linked PDB Filename : uxtheme.pdb
File Version : 6.00.2900.2180 (xpsp_sp2_rtm.040803-2158)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 6.00.2900.2180

ModLoad: 76390000 0001d000 C:WINDOWSsystem32IMM32.DLL (5.1.2600.2180) (PDB Symbols Loaded)
Linked PDB Filename : imm32.pdb
File Version : 5.1.2600.2180 (xpsp_sp2_rtm.040803-2158)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 5.1.2600.2180

ModLoad: 5cd70000 00007000 C:WINDOWSsystem32serwvdrv.dll (5.1.2600.0) (PDB Symbols Loaded)
Linked PDB Filename : serwvdrv.pdb
File Version : 5.1.2600.0 (xpclient.010817-1148)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 5.1.2600.0

ModLoad: 5b0a0000 00007000 C:WINDOWSsystem32umdmxfrm.dll (5.1.2600.0) (PDB Symbols Loaded)
Linked PDB Filename : umdmxfrm.pdb
File Version : 5.1.2600.0 (xpclient.010817-1148)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 5.1.2600.0

ModLoad: 773d0000 00103000 C:WINDOWSWinSxSx86_Microsoft.Windows.Common-Controls_6595b64144ccf1df_6.0.2600.2982_x-ww_ac3f9c03comctl32.dll (6.0.2900.2982) (PDB Symbols Loaded)
Linked PDB Filename : MicrosoftWindowsCommon-Controls-6.0.2600.2982-comctl32.pdb
File Version : 6.0 (xpsp.060825-0040)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 6.00.2900.2982

ModLoad: 5d090000 0009a000 C:WINDOWSsystem32comctl32.dll (5.82.2900.2982) (PDB Symbols Loaded)
Linked PDB Filename : comctl32.pdb
File Version : 5.82 (xpsp.060825-0040)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 6.00.2900.2982

ModLoad: 77690000 00021000 C:WINDOWSsystem32NTMARTA.DLL (5.1.2600.2180) (PDB Symbols Loaded)
Linked PDB Filename : ntmarta.pdb
File Version : 5.1.2600.2180 (xpsp_sp2_rtm.040803-2158)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 5.1.2600.2180

ModLoad: 76f60000 0002c000 C:WINDOWSsystem32WLDAP32.dll (5.1.2600.2180) (PDB Symbols Loaded)
Linked PDB Filename : wldap32.pdb
File Version : 5.1.2600.2180 (xpsp_sp2_rtm.040803-2158)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 5.1.2600.2180

ModLoad: 71bf0000 00013000 C:WINDOWSsystem32SAMLIB.dll (5.1.2600.2180) (PDB Symbols Loaded)
Linked PDB Filename : samlib.pdb
File Version : 5.1.2600.2180 (xpsp_sp2_rtm.040803-2158)
Company Name : Microsoft Corporation
Product Name : Microsoft� Windows� Operating System
Product Version : 5.1.2600.2180

ModLoad: 0ccf0000 00115000 C:Program FilesBOINCdbghelp.dll (6.6.7.5) (PDB Symbols Loaded)
Linked PDB Filename : dbghelp.pdb
File Version : 6.6.0007.5 (debuggers(dbg).051021-1446)
Company Name : Microsoft Corporation
Product Name : Debugging Tools for Windows(R)
Product Version : 6.6.0007.5

ModLoad: 0cf10000 00083000 C:Program FilesBOINCsymsrv.dll (6.6.7.5) (PDB Symbols Loaded)
Linked PDB Filename : symsrv.pdb
File Version : 6.6.0007.5 (debuggers(dbg).051021-1446)
Company Name : Microsoft Corporation
Product Name : Debugging Tools for Windows(R)
Product Version : 6.6.0007.5

ModLoad: 00ec0000 0003a000 C:Program FilesBOINCsrcsrv.dll (6.6.7.5) (PDB Symbols Loaded)
Linked PDB Filename : srcsrv.pdb
File Version : 6.6.0007.5 (debuggers(dbg).051021-1446)
Company Name : Microsoft Corporation
Product Name : Debugging Tools for Windows(R)
Product Version : 6.6.0007.5



*** Dump of the Process Statistics: ***

- I/O Operations Counters -
Read: 6398, Write: 0, Other 1428

- I/O Transfers Counters -
Read: 0, Write: 197439, Other 0

- Paged Pool Usage -
QuotaPagedPoolUsage: 68804, QuotaPeakPagedPoolUsage: 80964
QuotaNonPagedPoolUsage: 3552, QuotaPeakNonPagedPoolUsage: 4336

- Virtual Memory Usage -
VirtualSize: 235208704, PeakVirtualSize: 235212800

- Pagefile Usage -
PagefileUsage: 147607552, PeakPagefileUsage: 147607552

- Working Set Size -
WorkingSetSize: 149233664, PeakWorkingSetSize: 149233664, PageFaultCount: 41009

*** Dump of thread ID 2224 (state: Waiting): ***

- Information -
Status: Wait Reason: UserRequest, , Kernel Time: 72968752.000000, User Time: 397187488.000000, Wait Time: 2993075.000000

- Unhandled Exception Record -
Reason: Access Violation (0xc0000005) at address 0x006F8BD0 read attempt to address 0x00000000

- Registers -
eax=00000000 ebx=0000000f ecx=00000000 edx=0013bf4c esi=00000000 edi=0013bf4c
eip=006f8bd0 esp=0013bec4 ebp=00000001
cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00010246

- Callstack -
ChildEBP RetAddr Args to Child
0013bf00 006bb66c 0000009d 0013bf38 0013bf4c ab736f6a minirosetta_1.25_windows_intelx!+0x0
00000000 00000000 00000000 00000000 00000000 00000000 minirosetta_1.25_windows_intelx!+0x0

*** Dump of thread ID 3136 (state: Waiting): ***

- Information -
Status: Wait Reason: ExecutionDelay, , Kernel Time: 0.000000, User Time: 0.000000, Wait Time: 2993075.000000

- Registers -
eax=0134f8b0 ebx=00000000 ecx=00000005 edx=00000078 esi=00000000 edi=0134ff70
eip=7c90eb94 esp=0134ff40 ebp=0134ff98
cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00000202

- Callstack -
ChildEBP RetAddr Args to Child
0134ff3c 7c90d85c 7c8023ed 00000000 0134ff70 00000000 ntdll!_KiFastSystemCallRet@0+0x0 FPO: [0,0,0]
0134ff40 7c8023ed 00000000 0134ff70 00000000 7c802442 ntdll!_NtDelayExecution@8+0x0 FPO: [2,0,0]
0134ff98 7c802451 00000064 00000000 0134ffec 0041accb kernel32!_SleepEx@8+0x0
0134ffa8 0041accb 00000064 00000228 7c80b683 00000000 kernel32!_Sleep@4+0x0
0134ffec 00000000 0041acc0 00000000 00000000 00000008 minirosetta_1.25_windows_intelx!+0x0

*** Dump of thread ID 3740 (state: Waiting): ***

- Information -
Status: Wait Reason: ExecutionDelay, , Kernel Time: 0.000000, User Time: 0.000000, Wait Time: 2992968.000000

- Registers -
eax=0924ff34 ebx=05938800 ecx=00000000 edx=00000000 esi=00000000 edi=0924fdf8
eip=7c90eb94 esp=0924fdc8 ebp=0924fe20
cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00000202

- Callstack -
ChildEBP RetAddr Args to Child
0924fdc4 7c90d85c 7c8023ed 00000000 0924fdf8 00000002 ntdll!_KiFastSystemCallRet@0+0x0 FPO: [0,0,0]
0924fdc8 7c8023ed 00000000 0924fdf8 00000002 05938808 ntdll!_NtDelayExecution@8+0x0 FPO: [2,0,0]
0924fe20 7c802451 000007d0 00000000 7c802442 006a48f4 kernel32!_SleepEx@8+0x0
0924fe30 006a48f4 000007d0 a2442e32 0013bee8 05938808 kernel32!_Sleep@4+0x0
0924fe38 a2442e32 0013bee8 05938808 0924ff6c 05938808 minirosetta_1.25_windows_intelx!+0x0
0924fe3c 0013bee8 05938808 0924ff6c 05938808 00000001 minirosetta_1.25_windows_intelx!+0x0 SymFromAddr(): GetLastError = '126' SymGetLineFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = 'a2442e32'
0924ff3c 7c919aeb 7c919ba0 7c800000 0924ff7c 00000000 minirosetta_1.25_windows_intelx!+0x0 SymFromAddr(): GetLastError = '126' SymGetLineFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '0013bee8'
0924ffe0 7c80b68f 00000000 00000000 00000000 00427765 ntdll!_LdrpGetProcedureAddress@20+0x0 SymFromAddr(): GetLastError = '126' SymGetLineFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '7c919aeb'
0924ffe4 00000000 00000000 00000000 00427765 05938808 kernel32!_BaseThreadStart@8+0x0 FPO: [0,0,0] SymFromAddr(): GetLastError = '126' SymGetLineFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '7c80b68f'


*** Debug Message Dump ****


*** Foreground Window Data ***
Window Name :
Window Class :
Window Process ID: 0
Window Thread ID : 0

Exiting...

</stderr_txt>
]]>
23) Message boards : Number crunching : Problems with version 5.96 (Message 53341)
Posted 26 May 2008 by Profile hedera
Post:
Back from May 19 (I've been busy) I found today that I have 3 little tasks that never finished:

05/19/08 task 164834608 WU 150659671 Rosetta Beta 5.96 BAK1b0o_loop_model_biased_it01_3335_370_0

05/19/08 task 164834608 WU 150659671 Rosetta Beta 5.96 BAK1b0o_loop_model_biased_it19_3335_672

05/19/08 TASK 164837987 WU 150662996 Rosetta Beta 5.96 BAK1b0o_loop_model_biased_it13_3335_525

They're all sitting in my task list labeled "In progress." They aren't running on my computer; I have no idea what happened to them. They all had a reporting deadline of 5/29. Any idea what's going on?
24) Message boards : Number crunching : Problems with version 5.96 (Message 52577)
Posted 17 Apr 2008 by Profile hedera
Post:
I now have my 4GB of memory installed (came this morning! whee!) so the memory problem is no longer bothering me, but:

work units http://boinc.bakerlab.org/rosetta/workunit.php?wuid=142644377
and http://boinc.bakerlab.org/rosetta/workunit.php?wuid=142636856

are still running and the peak memory usage for both of them was around 420K. Whatever these are, they are LARGE.

25) Message boards : Number crunching : Problems with version 5.96 (Message 52569)
Posted 17 Apr 2008 by Profile hedera
Post:
At the moment this task is 54% done and "waiting for memory":

http://boinc.bakerlab.org/rosetta/result.php?resultid=156211157
http://boinc.bakerlab.org/rosetta/workunit.php?wuid=142644377

And these tasks are running:

http://boinc.bakerlab.org/rosetta/result.php?resultid=156203235 (31% done)
http://boinc.bakerlab.org/rosetta/workunit.php?wuid=142636856

http://boinc.bakerlab.org/rosetta/result.php?resultid=156409361 (4% done)
http://boinc.bakerlab.org/rosetta/workunit.php?wuid=142826368

I may have screwed up its scheduling last night when I suspended the project so I could do some actual work on the box. I don't usually have 3 at a time.

One of the 2 running tasks has a working memory set of just under 192K, and the other set size is just under 116K; I don't know which is which.

I actually have restricted memory use on my system, to 50% of memory when the box is in use and 85% when not, and until this last round of WUs that was enough. It isn't as bad this morning as it was last night. (I got the memory upgrade today! But it isn't in yet.)

26) Message boards : Number crunching : Problems with version 5.96 (Message 52540)
Posted 16 Apr 2008 by Profile hedera
Post:
I don't know if this is an issue with 5.96 (nothing actually seems to be crashing) or just with the RNA work units, but I'm posting this from my laptop because my desktop machine is completely non-responsive - I have 3 WU's "active" and among them they're eating over half a GB of RAM. And I only have a GB on a WinXP box. I literally can't get a response from keyboard or mouse.

I've ordered a memory upgrade to 4 GB after which you can analyze RNA if you want to, but in the meantime, have pity!!
27) Message boards : Number crunching : Problems with Rosetta version 5.82 (Message 51984)
Posted 16 Mar 2008 by Profile hedera
Post:
I have the identical error, twice in the last 2 days (on one computer), on WU 135337939:

CNTRL_01ABRELAX_SAVE_ALL_OUT_-1ubi_-_filters_1782_3320946_0

Do we have a problem with CNTRO_01ABRELAX... ??

CORRECTION: Oops, sorry I just realized, those errors were both in Rosetta 5.82, which isn't even running any more - I'm now running 5.95.


2 different computers and two different users, same results!

CNTRL_01ABRELAX_SAVE_ALL_OUT_-1ubi_-_filters_1782_3311498_0
http://boinc.bakerlab.org/rosetta/result.php?resultid=146793839
<core_client_version>5.10.45</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
# cpu_run_time_pref: 21600
# random seed: -32457
bad seed
ERROR:: Exit from: .dock_structure.cc line: 429

</stderr_txt>
]]>
----------------
CNTRL_01ABRELAX_SAVE_ALL_OUT_-1ubi_-_filters_1782_3311497_0

<core_client_version>5.10.45</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
# cpu_run_time_pref: 21600
# random seed: -32456
bad seed
ERROR:: Exit from: .dock_structure.cc line: 429

</stderr_txt>
]]>

-----------------

CNTRL_01ABRELAX_SAVE_ALL_OUT_-1ubi_-_filters_1782_3311496_0

<core_client_version>5.10.45</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
# cpu_run_time_pref: 21600
# random seed: -32455
bad seed
ERROR:: Exit from: .dock_structure.cc line: 429

</stderr_txt>
]]>
28) Message boards : Number crunching : Problems with Minirosetta version 1.09 (Message 51983)
Posted 16 Mar 2008 by Profile hedera
Post:
I'm not sure we have an ENTIRELY AV problem here: of the two problems I reported with mini-Rosetta, one WU was rerun successfully; the other, WU 135123822, says it's still rerunning - which is odd because all the tasks showing in BOINC manager are Rosetta 5.95. Also, I'm not running ESET (whatever that is) - I have ZoneAlarm Internet Security Suite with the Kaspersky anti-virus, and it hasn't reported any problems with any of the Rosetta programs.

29) Message boards : Number crunching : Problems with Minirosetta version 1.09 (Message 51970)
Posted 15 Mar 2008 by Profile hedera
Post:
Actually I've had two very similar errors:

Task ID 148193868
Name score13_hb_envtest62_A_1ubi__2980_771_0
Workunit 135123822
Created 14 Mar 2008 22:37:12 UTC
...

<core_client_version>5.10.20</core_client_version>
<![CDATA[
<stderr_txt>
Created semaphore
Created semaphore
Created semaphore
Created semaphore
Created semaphore
Created semaphore
======================================================
DONE :: 1 starting structures 5614.69 cpu seconds
This process generated 1 decoys from 1 attempts
======================================================

BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...
called boinc_finish

</stderr_txt>
<message>
<file_xfer_error>
<file_name>score13_hb_envtest62_A_1ubi__2980_771_0_0</file_name>
<error_code>-161</error_code>
</file_xfer_error>

</message>
]]>

It almost looks as though the workunit succeeded and then the file transfer failed, which is really frustrating if true.
30) Message boards : Number crunching : Problems with Minirosetta version 1.09 (Message 51969)
Posted 15 Mar 2008 by Profile hedera
Post:
Reporting an compute error with Mini-Rosetta:

Taskid: 148180840
workunit: 135111854
name: score13_hb_multitest62_A_1opd__2983_200_0

I got this error:

<core_client_version>5.10.20</core_client_version>
<![CDATA[
<stderr_txt>
Created semaphore
Created semaphore
Created semaphore
Created semaphore
======================================================
DONE :: 1 starting structures 5656.09 cpu seconds
This process generated 1 decoys from 1 attempts
======================================================

BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...
called boinc_finish

</stderr_txt>
<message>
<file_xfer_error>
<file_name>score13_hb_multitest62_A_1opd__2983_200_0_0</file_name>
<error_code>-161</error_code>
</file_xfer_error>

</message>
]]>

Is this something I did or a problem with Mini-Rosetta??

31) Message boards : Number crunching : Problems with Rosetta version 5.93 (Message 51930)
Posted 13 Mar 2008 by Profile hedera
Post:
Squiddy, on the Vista issue: I bought a Vista laptop last fall and was going to install BOINC, but when I looked into it, the message boards indicated that the only way to avoid Vista's "nanny prompts" for BOINC at startup was to install BOINC to run as a service. This isn't my usual practice, and I decided that was too much of a pain. I'm waiting for the BOINC team to add Vista compatibility to BOINC, but you might think about it for your novice user.

Just remember, in the land of the blind, the one-eyed man is king...
32) Message boards : Number crunching : Problems with Rosetta version 5.93 (Message 51096)
Posted 30 Jan 2008 by Profile hedera
Post:
The interesting thing with all this is that, after that one bad day a couple of weeks ago, I made a minor adjustment to the amount of memory (from 90% to 85% when computer is not in use) and CPU (from 100% to 90%) allowed, and since that time my WUs have been cranking happily away, finishing in the normal 2-4 hours of CPU time, and not overwhelming my Pentium IV. And no errors. Maybe I'm just lucky.
33) Message boards : Number crunching : Problems with Rosetta version 5.93 (Message 50982)
Posted 25 Jan 2008 by Profile hedera
Post:
What's the default on CPU runtime limits? I looked at my settings and target CPU runtime is "not selected", so I have whatever you get when you don't specify. Do we have a consensus on what it should be?? I'm a little confused.
34) Message boards : Number crunching : Problems with Rosetta version 5.93 (Message 50977)
Posted 25 Jan 2008 by Profile hedera
Post:
Another 24ho oddity - I had this one, work unit 123329393:

2h4o__BOINC_TWIST_RINGS_TWIST_ANGLE_SYMM_FOLD_AND_DOCK-2h4o_-native__2668_12846

that ran 12.53 hours of CPU time! My outcome says "Success" and "Done" (and I got plenty of credit for it) - but when I look at the details, I see:

<core_client_version>5.10.20</core_client_version>
<![CDATA[
<stderr_txt>
# cpu_run_time_pref: 10800
# random seed: 1745555
# cpu_run_time_pref: 10800
# random seed: 1745555
# cpu_run_time_pref: 10800
**********************************************************************
Rosetta score is stuck or going too long. Watchdog is ending the run!
CPU time: 45123.3 seconds. Greater than 4X preferred time: 10800 seconds
**********************************************************************
GZIP SILENT FILE: .xx2h4o.out

But it shows a "Validate state" of VALID. I certainly am not complaining about the credit, but how can it be done and valid if Watchdog shut it down??
35) Message boards : Number crunching : Problems with Rosetta version 5.93 (Message 50786)
Posted 17 Jan 2008 by Profile hedera
Post:
I notice 2 things today, which may simply mean I notice things slowly:

1. My system is running MUCH faster today. Yesterday I waited minutes for the screen to change.

2. BOINC is running Rosetta Beta 5.93.

I don't recall noticing that I had Rosetta Beta 5.93 before, am I just slow at noticing? Because it feels like something has changed. Was I simply running some very intensive WUs yesterday?? Today's memory usage is noticeably lower. Yesterday I was running these tasks:

http://boinc.bakerlab.org/rosetta/result.php?resultid=133780391
http://boinc.bakerlab.org/rosetta/result.php?resultid=133748830

I'm STILL running this task (it's about done), which has been going since sometime on the 15th:

http://boinc.bakerlab.org/rosetta/result.php?resultid=133728745

Are these tasks unusually complex or large??
36) Message boards : Number crunching : Problems with Rosetta version 5.93 (Message 50695)
Posted 15 Jan 2008 by Profile hedera
Post:
OK, my current memory preferences are:

50% when computer is in use
90% when computer isn't in use

How would you advise me to trim that to keep 2 and only 2 WUs running? As far as I could tell from the BOINC manager console, when one of the WUs got above 90% (maybe above 95%), it began using enough less memory that Rosetta could launch another WU... I didn't see 3 WUs working unless at least one of them was in the high 90% completed range.
37) Message boards : Number crunching : Problems with Rosetta version 5.93 (Message 50691)
Posted 14 Jan 2008 by Profile hedera
Post:
5.93 is eating my Windows machine alive. I tried to do something this afternoon and the box was so hung it was barely responding. Here's my system, from the opening log:

01/14/2008 8:11:54 AM||Starting BOINC client version 5.10.20 for windows_intelx86
01/14/2008 8:11:54 AM||log flags: task, file_xfer, sched_ops
01/14/2008 8:11:54 AM||Libraries: libcurl/7.16.4 OpenSSL/0.9.8e zlib/1.2.3
01/14/2008 8:11:54 AM||Data directory: C:Program FilesBOINC
01/14/2008 8:11:56 AM||Processor: 2 GenuineIntel Intel(R) Pentium(R) 4 CPU 3.20GHz [x86 Family 15 Model 4 Stepping 1]
01/14/2008 8:11:56 AM||Processor features: fpu tsc pae nx sse sse2 mmx
01/14/2008 8:11:57 AM||OS: Microsoft Windows XP: Professional Edition, Service Pack 2, (05.01.2600.00)
01/14/2008 8:11:57 AM||Memory: 1022.09 MB physical, 2.40 GB virtual
01/14/2008 8:11:57 AM||Disk: 145.27 GB total, 106.66 GB free
01/14/2008 8:11:57 AM||Local time is UTC -8 hours

In mid-afternoon (around 3:30 PM local), first of all I had three WUs running at once; and when I looked at the task manager I saw that they were using a whole lot of memory:

319,896K
258,352K
34,636K

That's 612,884K, just for Rosetta! Add to this the fact that ZoneAlarm Internet Security (which I recently installed to replace Norton) was running some kind of update, and I could barely get the mouse to respond. I suspended Rosetta temporarily so I could post this and let ZA finish whatever it was doing. (I'll be discussing this with them.)

I've been running on the assumption that my computing preferences, which are pretty standard, would give me 2 WUs using, between them, 98-100% of CPU but NOT this much memory! Is there some tweak I should do to my settings? Should I expect to be running 3 or even 4 WUs at a time?

38) Message boards : Number crunching : Problems with Rosetta version 5.89 (Message 49719)
Posted 16 Dec 2007 by Profile hedera
Post:
Ver. 5.89 seems to be better than the disastrous 5.85 but I'm still seeing very large memory requirements: right now the 2 Rosetta tasks I can run are taking up 220MB of memory between them, and the virtual machine sizes are respectively 426MB and 398MB. This makes me just a tad nervous although Win Task Manager shows memory use more moderate than it has been: peak memory is about 130MB.

What I'm concerned about is that my machine over the last few weeks has taken to suddenly slowing to a standstill, and when I check the task manager, I see huge memory figures for the Rosetta tasks. I'm considering reducing the memory allocation from 50% during machine use to 40% - would this impact my ability to run the tasks on a 1 GB machine??

39) Message boards : Number crunching : Problems with Rosetta version 5.85 (or 5.86 for linux) (Message 49454)
Posted 6 Dec 2007 by Profile hedera
Post:
After browsing these posts I think I understand why my computer has been so SLOW lately! Are there any plans to mitigate this??

Also, I'm running two tasks at the moment, and one of them is using 62MB of memory and the other 227MB! Between Windows Task Manager and BOINC there isn't enough shared information to tell me which is the hog:

w099_1_homologymodel_strictosidine_synthase_2352_21372_0
cfr_d0_2353_11473_0_0

They're both running under 5.85. Right now things aren't too bad but I only have 1 GB memory on my system and two tasks each taking a quarter of a GB would really hit me hard! They started about the same time and both have about 1.5 - 1.75 hours to go; but then I'm going to start on some BOINC_SYMM_FOLD_AND_DOCK_RELAX tasks - what kind of impact should I expect them to have?

Really, for most of the time I've been running Rosetta it hasn't been this bad...

40) Message boards : Number crunching : BOINC and Windows Vista (Message 48045)
Posted 26 Oct 2007 by Profile hedera
Post:
Thanks everybody for the feedback on BOINC and Vista. Having read all this, I think I will wait until BOINC 6.0 is available before adding my new Vista laptop to my Rosetta stable.


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