Posts by hedera

21) Message boards : Number crunching : Problems with version 5.96 (Message 52577)
Posted 17 Apr 2008 by Profile hedera
Post:
I now have my 4GB of memory installed (came this morning! whee!) so the memory problem is no longer bothering me, but:

work units http://boinc.bakerlab.org/rosetta/workunit.php?wuid=142644377
and http://boinc.bakerlab.org/rosetta/workunit.php?wuid=142636856

are still running and the peak memory usage for both of them was around 420K. Whatever these are, they are LARGE.

22) Message boards : Number crunching : Problems with version 5.96 (Message 52569)
Posted 17 Apr 2008 by Profile hedera
Post:
At the moment this task is 54% done and "waiting for memory":

http://boinc.bakerlab.org/rosetta/result.php?resultid=156211157
http://boinc.bakerlab.org/rosetta/workunit.php?wuid=142644377

And these tasks are running:

http://boinc.bakerlab.org/rosetta/result.php?resultid=156203235 (31% done)
http://boinc.bakerlab.org/rosetta/workunit.php?wuid=142636856

http://boinc.bakerlab.org/rosetta/result.php?resultid=156409361 (4% done)
http://boinc.bakerlab.org/rosetta/workunit.php?wuid=142826368

I may have screwed up its scheduling last night when I suspended the project so I could do some actual work on the box. I don't usually have 3 at a time.

One of the 2 running tasks has a working memory set of just under 192K, and the other set size is just under 116K; I don't know which is which.

I actually have restricted memory use on my system, to 50% of memory when the box is in use and 85% when not, and until this last round of WUs that was enough. It isn't as bad this morning as it was last night. (I got the memory upgrade today! But it isn't in yet.)

23) Message boards : Number crunching : Problems with version 5.96 (Message 52540)
Posted 16 Apr 2008 by Profile hedera
Post:
I don't know if this is an issue with 5.96 (nothing actually seems to be crashing) or just with the RNA work units, but I'm posting this from my laptop because my desktop machine is completely non-responsive - I have 3 WU's "active" and among them they're eating over half a GB of RAM. And I only have a GB on a WinXP box. I literally can't get a response from keyboard or mouse.

I've ordered a memory upgrade to 4 GB after which you can analyze RNA if you want to, but in the meantime, have pity!!
24) Message boards : Number crunching : Problems with Rosetta version 5.82 (Message 51984)
Posted 16 Mar 2008 by Profile hedera
Post:
I have the identical error, twice in the last 2 days (on one computer), on WU 135337939:

CNTRL_01ABRELAX_SAVE_ALL_OUT_-1ubi_-_filters_1782_3320946_0

Do we have a problem with CNTRO_01ABRELAX... ??

CORRECTION: Oops, sorry I just realized, those errors were both in Rosetta 5.82, which isn't even running any more - I'm now running 5.95.


2 different computers and two different users, same results!

CNTRL_01ABRELAX_SAVE_ALL_OUT_-1ubi_-_filters_1782_3311498_0
http://boinc.bakerlab.org/rosetta/result.php?resultid=146793839
<core_client_version>5.10.45</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
# cpu_run_time_pref: 21600
# random seed: -32457
bad seed
ERROR:: Exit from: .dock_structure.cc line: 429

</stderr_txt>
]]>
----------------
CNTRL_01ABRELAX_SAVE_ALL_OUT_-1ubi_-_filters_1782_3311497_0

<core_client_version>5.10.45</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
# cpu_run_time_pref: 21600
# random seed: -32456
bad seed
ERROR:: Exit from: .dock_structure.cc line: 429

</stderr_txt>
]]>

-----------------

CNTRL_01ABRELAX_SAVE_ALL_OUT_-1ubi_-_filters_1782_3311496_0

<core_client_version>5.10.45</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
# cpu_run_time_pref: 21600
# random seed: -32455
bad seed
ERROR:: Exit from: .dock_structure.cc line: 429

</stderr_txt>
]]>
25) Message boards : Number crunching : Problems with Minirosetta version 1.09 (Message 51983)
Posted 16 Mar 2008 by Profile hedera
Post:
I'm not sure we have an ENTIRELY AV problem here: of the two problems I reported with mini-Rosetta, one WU was rerun successfully; the other, WU 135123822, says it's still rerunning - which is odd because all the tasks showing in BOINC manager are Rosetta 5.95. Also, I'm not running ESET (whatever that is) - I have ZoneAlarm Internet Security Suite with the Kaspersky anti-virus, and it hasn't reported any problems with any of the Rosetta programs.

26) Message boards : Number crunching : Problems with Minirosetta version 1.09 (Message 51970)
Posted 15 Mar 2008 by Profile hedera
Post:
Actually I've had two very similar errors:

Task ID 148193868
Name score13_hb_envtest62_A_1ubi__2980_771_0
Workunit 135123822
Created 14 Mar 2008 22:37:12 UTC
...

<core_client_version>5.10.20</core_client_version>
<![CDATA[
<stderr_txt>
Created semaphore
Created semaphore
Created semaphore
Created semaphore
Created semaphore
Created semaphore
======================================================
DONE :: 1 starting structures 5614.69 cpu seconds
This process generated 1 decoys from 1 attempts
======================================================

BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...
called boinc_finish

</stderr_txt>
<message>
<file_xfer_error>
<file_name>score13_hb_envtest62_A_1ubi__2980_771_0_0</file_name>
<error_code>-161</error_code>
</file_xfer_error>

</message>
]]>

It almost looks as though the workunit succeeded and then the file transfer failed, which is really frustrating if true.
27) Message boards : Number crunching : Problems with Minirosetta version 1.09 (Message 51969)
Posted 15 Mar 2008 by Profile hedera
Post:
Reporting an compute error with Mini-Rosetta:

Taskid: 148180840
workunit: 135111854
name: score13_hb_multitest62_A_1opd__2983_200_0

I got this error:

<core_client_version>5.10.20</core_client_version>
<![CDATA[
<stderr_txt>
Created semaphore
Created semaphore
Created semaphore
Created semaphore
======================================================
DONE :: 1 starting structures 5656.09 cpu seconds
This process generated 1 decoys from 1 attempts
======================================================

BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...
called boinc_finish

</stderr_txt>
<message>
<file_xfer_error>
<file_name>score13_hb_multitest62_A_1opd__2983_200_0_0</file_name>
<error_code>-161</error_code>
</file_xfer_error>

</message>
]]>

Is this something I did or a problem with Mini-Rosetta??

28) Message boards : Number crunching : Problems with Rosetta version 5.93 (Message 51930)
Posted 13 Mar 2008 by Profile hedera
Post:
Squiddy, on the Vista issue: I bought a Vista laptop last fall and was going to install BOINC, but when I looked into it, the message boards indicated that the only way to avoid Vista's "nanny prompts" for BOINC at startup was to install BOINC to run as a service. This isn't my usual practice, and I decided that was too much of a pain. I'm waiting for the BOINC team to add Vista compatibility to BOINC, but you might think about it for your novice user.

Just remember, in the land of the blind, the one-eyed man is king...
29) Message boards : Number crunching : Problems with Rosetta version 5.93 (Message 51096)
Posted 30 Jan 2008 by Profile hedera
Post:
The interesting thing with all this is that, after that one bad day a couple of weeks ago, I made a minor adjustment to the amount of memory (from 90% to 85% when computer is not in use) and CPU (from 100% to 90%) allowed, and since that time my WUs have been cranking happily away, finishing in the normal 2-4 hours of CPU time, and not overwhelming my Pentium IV. And no errors. Maybe I'm just lucky.
30) Message boards : Number crunching : Problems with Rosetta version 5.93 (Message 50982)
Posted 25 Jan 2008 by Profile hedera
Post:
What's the default on CPU runtime limits? I looked at my settings and target CPU runtime is "not selected", so I have whatever you get when you don't specify. Do we have a consensus on what it should be?? I'm a little confused.
31) Message boards : Number crunching : Problems with Rosetta version 5.93 (Message 50977)
Posted 25 Jan 2008 by Profile hedera
Post:
Another 24ho oddity - I had this one, work unit 123329393:

2h4o__BOINC_TWIST_RINGS_TWIST_ANGLE_SYMM_FOLD_AND_DOCK-2h4o_-native__2668_12846

that ran 12.53 hours of CPU time! My outcome says "Success" and "Done" (and I got plenty of credit for it) - but when I look at the details, I see:

<core_client_version>5.10.20</core_client_version>
<![CDATA[
<stderr_txt>
# cpu_run_time_pref: 10800
# random seed: 1745555
# cpu_run_time_pref: 10800
# random seed: 1745555
# cpu_run_time_pref: 10800
**********************************************************************
Rosetta score is stuck or going too long. Watchdog is ending the run!
CPU time: 45123.3 seconds. Greater than 4X preferred time: 10800 seconds
**********************************************************************
GZIP SILENT FILE: .xx2h4o.out

But it shows a "Validate state" of VALID. I certainly am not complaining about the credit, but how can it be done and valid if Watchdog shut it down??
32) Message boards : Number crunching : Problems with Rosetta version 5.93 (Message 50786)
Posted 17 Jan 2008 by Profile hedera
Post:
I notice 2 things today, which may simply mean I notice things slowly:

1. My system is running MUCH faster today. Yesterday I waited minutes for the screen to change.

2. BOINC is running Rosetta Beta 5.93.

I don't recall noticing that I had Rosetta Beta 5.93 before, am I just slow at noticing? Because it feels like something has changed. Was I simply running some very intensive WUs yesterday?? Today's memory usage is noticeably lower. Yesterday I was running these tasks:

http://boinc.bakerlab.org/rosetta/result.php?resultid=133780391
http://boinc.bakerlab.org/rosetta/result.php?resultid=133748830

I'm STILL running this task (it's about done), which has been going since sometime on the 15th:

http://boinc.bakerlab.org/rosetta/result.php?resultid=133728745

Are these tasks unusually complex or large??
33) Message boards : Number crunching : Problems with Rosetta version 5.93 (Message 50695)
Posted 15 Jan 2008 by Profile hedera
Post:
OK, my current memory preferences are:

50% when computer is in use
90% when computer isn't in use

How would you advise me to trim that to keep 2 and only 2 WUs running? As far as I could tell from the BOINC manager console, when one of the WUs got above 90% (maybe above 95%), it began using enough less memory that Rosetta could launch another WU... I didn't see 3 WUs working unless at least one of them was in the high 90% completed range.
34) Message boards : Number crunching : Problems with Rosetta version 5.93 (Message 50691)
Posted 14 Jan 2008 by Profile hedera
Post:
5.93 is eating my Windows machine alive. I tried to do something this afternoon and the box was so hung it was barely responding. Here's my system, from the opening log:

01/14/2008 8:11:54 AM||Starting BOINC client version 5.10.20 for windows_intelx86
01/14/2008 8:11:54 AM||log flags: task, file_xfer, sched_ops
01/14/2008 8:11:54 AM||Libraries: libcurl/7.16.4 OpenSSL/0.9.8e zlib/1.2.3
01/14/2008 8:11:54 AM||Data directory: C:Program FilesBOINC
01/14/2008 8:11:56 AM||Processor: 2 GenuineIntel Intel(R) Pentium(R) 4 CPU 3.20GHz [x86 Family 15 Model 4 Stepping 1]
01/14/2008 8:11:56 AM||Processor features: fpu tsc pae nx sse sse2 mmx
01/14/2008 8:11:57 AM||OS: Microsoft Windows XP: Professional Edition, Service Pack 2, (05.01.2600.00)
01/14/2008 8:11:57 AM||Memory: 1022.09 MB physical, 2.40 GB virtual
01/14/2008 8:11:57 AM||Disk: 145.27 GB total, 106.66 GB free
01/14/2008 8:11:57 AM||Local time is UTC -8 hours

In mid-afternoon (around 3:30 PM local), first of all I had three WUs running at once; and when I looked at the task manager I saw that they were using a whole lot of memory:

319,896K
258,352K
34,636K

That's 612,884K, just for Rosetta! Add to this the fact that ZoneAlarm Internet Security (which I recently installed to replace Norton) was running some kind of update, and I could barely get the mouse to respond. I suspended Rosetta temporarily so I could post this and let ZA finish whatever it was doing. (I'll be discussing this with them.)

I've been running on the assumption that my computing preferences, which are pretty standard, would give me 2 WUs using, between them, 98-100% of CPU but NOT this much memory! Is there some tweak I should do to my settings? Should I expect to be running 3 or even 4 WUs at a time?

35) Message boards : Number crunching : Problems with Rosetta version 5.89 (Message 49719)
Posted 16 Dec 2007 by Profile hedera
Post:
Ver. 5.89 seems to be better than the disastrous 5.85 but I'm still seeing very large memory requirements: right now the 2 Rosetta tasks I can run are taking up 220MB of memory between them, and the virtual machine sizes are respectively 426MB and 398MB. This makes me just a tad nervous although Win Task Manager shows memory use more moderate than it has been: peak memory is about 130MB.

What I'm concerned about is that my machine over the last few weeks has taken to suddenly slowing to a standstill, and when I check the task manager, I see huge memory figures for the Rosetta tasks. I'm considering reducing the memory allocation from 50% during machine use to 40% - would this impact my ability to run the tasks on a 1 GB machine??

36) Message boards : Number crunching : Problems with Rosetta version 5.85 (or 5.86 for linux) (Message 49454)
Posted 6 Dec 2007 by Profile hedera
Post:
After browsing these posts I think I understand why my computer has been so SLOW lately! Are there any plans to mitigate this??

Also, I'm running two tasks at the moment, and one of them is using 62MB of memory and the other 227MB! Between Windows Task Manager and BOINC there isn't enough shared information to tell me which is the hog:

w099_1_homologymodel_strictosidine_synthase_2352_21372_0
cfr_d0_2353_11473_0_0

They're both running under 5.85. Right now things aren't too bad but I only have 1 GB memory on my system and two tasks each taking a quarter of a GB would really hit me hard! They started about the same time and both have about 1.5 - 1.75 hours to go; but then I'm going to start on some BOINC_SYMM_FOLD_AND_DOCK_RELAX tasks - what kind of impact should I expect them to have?

Really, for most of the time I've been running Rosetta it hasn't been this bad...

37) Message boards : Number crunching : BOINC and Windows Vista (Message 48045)
Posted 26 Oct 2007 by Profile hedera
Post:
Thanks everybody for the feedback on BOINC and Vista. Having read all this, I think I will wait until BOINC 6.0 is available before adding my new Vista laptop to my Rosetta stable.
38) Message boards : Number crunching : Recovering After the Disaster (Message 45854)
Posted 9 Sep 2007 by Profile hedera
Post:
I run an Intel Pentium IV system with Windows XP Pro/SP 2.

While Rosetta was down, I accumulated 4 completed tasks. BOINC has managed to upload one of them; but it keeps getting an "internal shared memory" error. Today's log is at the end of this text (sorry it's so much but I thought you might need the errors). I've successfully downloaded and started 2 new tasks, so I'm back up.

BEGIN LOG EXTRACT:

09/09/2007 8:02:18 AM||Starting BOINC client version 5.10.7 for windows_intelx86
09/09/2007 8:02:18 AM||log flags: task, file_xfer, sched_ops
09/09/2007 8:02:18 AM||Libraries: libcurl/7.16.1 OpenSSL/0.9.8e zlib/1.2.3
09/09/2007 8:02:18 AM||Data directory: C:Program FilesBOINC
09/09/2007 8:02:20 AM||Processor: 2 GenuineIntel Intel(R) Pentium(R) 4 CPU 3.20GHz [x86 Family 15 Model 4 Stepping 1]
09/09/2007 8:02:20 AM||Processor features: fpu tsc pae nx sse sse2 mmx
09/09/2007 8:02:20 AM||Memory: 1022.09 MB physical, 2.40 GB virtual
09/09/2007 8:02:20 AM||Disk: 145.27 GB total, 115.72 GB free
09/09/2007 8:02:20 AM|rosetta@home|URL: http://boinc.bakerlab.org/rosetta/; Computer ID: 272841; location: home; project prefs: default
09/09/2007 8:02:20 AM||General prefs: from rosetta@home (last modified 2006-12-23 08:49:18)
09/09/2007 8:02:20 AM||Host location: home
09/09/2007 8:02:20 AM||General prefs: no separate prefs for home; using your defaults
09/09/2007 8:02:20 AM||Preferences limit memory usage when active to 511.04MB
09/09/2007 8:02:20 AM||Preferences limit memory usage when idle to 919.88MB
09/09/2007 8:02:20 AM||Preferences limit disk usage to 72.64GB
09/09/2007 8:02:21 AM|rosetta@home|[file_xfer] Started upload of file apo_lfabp_BOINC_MFR_ABRELAX_CONTROL_2015_39695_0_0
09/09/2007 8:02:21 AM|rosetta@home|[file_xfer] Started upload of file MTH1598_BOINC_MFR_ABRELAX_PICKED_2026_31838_0_0
09/09/2007 8:02:22 AM|rosetta@home|Sending scheduler request: To report completed tasks
09/09/2007 8:02:22 AM|rosetta@home|Requesting 60480 seconds of new work, and reporting 2 completed tasks
09/09/2007 8:02:37 AM|rosetta@home|Scheduler RPC succeeded [server version 509]
09/09/2007 8:02:37 AM|rosetta@home|Deferring communication for 4 min 2 sec
09/09/2007 8:02:37 AM|rosetta@home|Reason: requested by project
09/09/2007 8:02:40 AM|rosetta@home|[file_xfer] Started download of file rosetta_beta_5.78_windows_intelx86.exe
09/09/2007 8:02:40 AM|rosetta@home|[file_xfer] Started download of file boinc_aa1SENA03_05.200_v1_3.gz
09/09/2007 8:02:49 AM||Project communication failed: attempting access to reference site
09/09/2007 8:02:49 AM|rosetta@home|[file_xfer] Temporarily failed upload of apo_lfabp_BOINC_MFR_ABRELAX_CONTROL_2015_39695_0_0: system connect
09/09/2007 8:02:49 AM|rosetta@home|Backing off 47 min 9 sec on upload of file apo_lfabp_BOINC_MFR_ABRELAX_CONTROL_2015_39695_0_0
09/09/2007 8:02:49 AM|rosetta@home|[file_xfer] Temporarily failed upload of MTH1598_BOINC_MFR_ABRELAX_PICKED_2026_31838_0_0: system connect
09/09/2007 8:02:49 AM|rosetta@home|Backing off 1 min 12 sec on upload of file MTH1598_BOINC_MFR_ABRELAX_PICKED_2026_31838_0_0
09/09/2007 8:02:49 AM|rosetta@home|[file_xfer] Started upload of file MTH1598_BOINC_MFR_ABRELAX_PICKED_2026_33299_0_0
09/09/2007 8:02:49 AM|rosetta@home|[file_xfer] Started upload of file flua_BOINC_MFR_ABRELAX_PICKED_2024_33457_0_0
09/09/2007 8:02:52 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:03:02 AM||Project communication failed: attempting access to reference site
09/09/2007 8:03:02 AM|rosetta@home|[file_xfer] Temporarily failed download of rosetta_beta_5.78_windows_intelx86.exe: system connect
09/09/2007 8:03:02 AM|rosetta@home|[file_xfer] Temporarily failed download of boinc_aa1SENA03_05.200_v1_3.gz: system connect
09/09/2007 8:03:02 AM|rosetta@home|[file_xfer] Started download of file boinc_aa1SENA09_05.200_v1_3.gz
09/09/2007 8:03:02 AM|rosetta@home|[file_xfer] Started download of file 1SEN.pdb
09/09/2007 8:03:04 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:03:12 AM||Project communication failed: attempting access to reference site
09/09/2007 8:03:12 AM|rosetta@home|[file_xfer] Temporarily failed upload of MTH1598_BOINC_MFR_ABRELAX_PICKED_2026_33299_0_0: system connect
09/09/2007 8:03:12 AM|rosetta@home|Backing off 3 hr 52 min 46 sec on upload of file MTH1598_BOINC_MFR_ABRELAX_PICKED_2026_33299_0_0
09/09/2007 8:03:12 AM|rosetta@home|[file_xfer] Temporarily failed upload of flua_BOINC_MFR_ABRELAX_PICKED_2024_33457_0_0: system connect
09/09/2007 8:03:12 AM|rosetta@home|Backing off 3 hr 20 min 18 sec on upload of file flua_BOINC_MFR_ABRELAX_PICKED_2024_33457_0_0
09/09/2007 8:03:13 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:03:24 AM||Project communication failed: attempting access to reference site
09/09/2007 8:03:24 AM|rosetta@home|[file_xfer] Temporarily failed download of boinc_aa1SENA09_05.200_v1_3.gz: system connect
09/09/2007 8:03:24 AM|rosetta@home|[file_xfer] Temporarily failed download of 1SEN.pdb: system connect
09/09/2007 8:03:24 AM|rosetta@home|[file_xfer] Started download of file 1SENA.fasta
09/09/2007 8:03:24 AM|rosetta@home|[file_xfer] Started download of file abrelax_control_description.txt
09/09/2007 8:03:26 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:03:46 AM||Project communication failed: attempting access to reference site
09/09/2007 8:03:46 AM|rosetta@home|[file_xfer] Temporarily failed download of 1SENA.fasta: system connect
09/09/2007 8:03:46 AM|rosetta@home|[file_xfer] Temporarily failed download of abrelax_control_description.txt: system connect
09/09/2007 8:03:46 AM|rosetta@home|[file_xfer] Started download of file 1iibA.fasta
09/09/2007 8:03:46 AM|rosetta@home|[file_xfer] Started download of file 1iib.pdb.gz
09/09/2007 8:03:48 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:04:02 AM|rosetta@home|[file_xfer] Started upload of file MTH1598_BOINC_MFR_ABRELAX_PICKED_2026_31838_0_0
09/09/2007 8:04:08 AM||Project communication failed: attempting access to reference site
09/09/2007 8:04:08 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iibA.fasta: system connect
09/09/2007 8:04:08 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iib.pdb.gz: system connect
09/09/2007 8:04:08 AM|rosetta@home|[file_xfer] Started download of file 1iibA.psipred_ss2.gz
09/09/2007 8:04:08 AM|rosetta@home|[file_xfer] Started download of file 051207_cc1iibA03_05.200_v1_3.gz
09/09/2007 8:04:10 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:04:24 AM||Project communication failed: attempting access to reference site
09/09/2007 8:04:24 AM|rosetta@home|[file_xfer] Temporarily failed upload of MTH1598_BOINC_MFR_ABRELAX_PICKED_2026_31838_0_0: system connect
09/09/2007 8:04:24 AM|rosetta@home|Backing off 3 hr 13 min 7 sec on upload of file MTH1598_BOINC_MFR_ABRELAX_PICKED_2026_31838_0_0
09/09/2007 8:04:26 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:04:30 AM||Project communication failed: attempting access to reference site
09/09/2007 8:04:30 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iibA.psipred_ss2.gz: system connect
09/09/2007 8:04:30 AM|rosetta@home|[file_xfer] Temporarily failed download of 051207_cc1iibA03_05.200_v1_3.gz: system connect
09/09/2007 8:04:30 AM|rosetta@home|[file_xfer] Started download of file 051207_cc1iibA09_05.200_v1_3.gz
09/09/2007 8:04:30 AM|rosetta@home|[file_xfer] Started download of file ccfrags200.txt
09/09/2007 8:04:31 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:04:52 AM||Project communication failed: attempting access to reference site
09/09/2007 8:04:52 AM|rosetta@home|[file_xfer] Temporarily failed download of 051207_cc1iibA09_05.200_v1_3.gz: system connect
09/09/2007 8:04:52 AM|rosetta@home|[file_xfer] Temporarily failed download of ccfrags200.txt: system connect
09/09/2007 8:04:53 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:04:53 AM|rosetta@home|[file_xfer] Started download of file rosetta_beta_5.78_windows_intelx86.exe
09/09/2007 8:04:53 AM|rosetta@home|[file_xfer] Started download of file boinc_aa1SENA03_05.200_v1_3.gz
09/09/2007 8:04:55 AM||Project communication failed: attempting access to reference site
09/09/2007 8:04:55 AM|rosetta@home|[file_xfer] Temporarily failed download of rosetta_beta_5.78_windows_intelx86.exe: system connect
09/09/2007 8:04:55 AM|rosetta@home|[file_xfer] Temporarily failed download of boinc_aa1SENA03_05.200_v1_3.gz: system connect
09/09/2007 8:04:55 AM|rosetta@home|[file_xfer] Started download of file boinc_aa1SENA09_05.200_v1_3.gz
09/09/2007 8:04:55 AM|rosetta@home|[file_xfer] Started download of file 1SEN.pdb
09/09/2007 8:04:57 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:04:57 AM|rosetta@home|[file_xfer] Temporarily failed download of boinc_aa1SENA09_05.200_v1_3.gz: system connect
09/09/2007 8:04:57 AM|rosetta@home|[file_xfer] Temporarily failed download of 1SEN.pdb: system connect
09/09/2007 8:04:57 AM|rosetta@home|[file_xfer] Started download of file 1SENA.fasta
09/09/2007 8:04:57 AM|rosetta@home|[file_xfer] Started download of file abrelax_control_description.txt
09/09/2007 8:04:59 AM||Project communication failed: attempting access to reference site
09/09/2007 8:04:59 AM|rosetta@home|[file_xfer] Temporarily failed download of 1SENA.fasta: system connect
09/09/2007 8:04:59 AM|rosetta@home|[file_xfer] Temporarily failed download of abrelax_control_description.txt: system connect
09/09/2007 8:04:59 AM|rosetta@home|[file_xfer] Started download of file 1iibA.fasta
09/09/2007 8:04:59 AM|rosetta@home|[file_xfer] Started download of file 1iib.pdb.gz
09/09/2007 8:05:00 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:05:01 AM||Project communication failed: attempting access to reference site
09/09/2007 8:05:01 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iibA.fasta: system connect
09/09/2007 8:05:01 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iib.pdb.gz: system connect
09/09/2007 8:05:01 AM|rosetta@home|[file_xfer] Started download of file 1iibA.psipred_ss2.gz
09/09/2007 8:05:01 AM|rosetta@home|[file_xfer] Started download of file 051207_cc1iibA03_05.200_v1_3.gz
09/09/2007 8:05:02 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:05:03 AM||Project communication failed: attempting access to reference site
09/09/2007 8:05:03 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iibA.psipred_ss2.gz: system connect
09/09/2007 8:05:03 AM|rosetta@home|[file_xfer] Temporarily failed download of 051207_cc1iibA03_05.200_v1_3.gz: system connect
09/09/2007 8:05:03 AM|rosetta@home|[file_xfer] Started download of file 051207_cc1iibA09_05.200_v1_3.gz
09/09/2007 8:05:03 AM|rosetta@home|[file_xfer] Started download of file ccfrags200.txt
09/09/2007 8:05:04 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:05:05 AM||Project communication failed: attempting access to reference site
09/09/2007 8:05:05 AM|rosetta@home|[file_xfer] Temporarily failed download of 051207_cc1iibA09_05.200_v1_3.gz: system connect
09/09/2007 8:05:05 AM|rosetta@home|[file_xfer] Temporarily failed download of ccfrags200.txt: system connect
09/09/2007 8:05:06 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:05:06 AM|rosetta@home|[file_xfer] Started download of file rosetta_beta_5.78_windows_intelx86.exe
09/09/2007 8:05:06 AM|rosetta@home|[file_xfer] Started download of file boinc_aa1SENA03_05.200_v1_3.gz
09/09/2007 8:05:08 AM||Project communication failed: attempting access to reference site
09/09/2007 8:05:08 AM|rosetta@home|[file_xfer] Temporarily failed download of rosetta_beta_5.78_windows_intelx86.exe: system connect
09/09/2007 8:05:08 AM|rosetta@home|[file_xfer] Temporarily failed download of boinc_aa1SENA03_05.200_v1_3.gz: system connect
09/09/2007 8:05:08 AM|rosetta@home|[file_xfer] Started download of file boinc_aa1SENA09_05.200_v1_3.gz
09/09/2007 8:05:08 AM|rosetta@home|[file_xfer] Started download of file 1SEN.pdb
09/09/2007 8:05:09 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:05:10 AM||Project communication failed: attempting access to reference site
09/09/2007 8:05:10 AM|rosetta@home|[file_xfer] Temporarily failed download of boinc_aa1SENA09_05.200_v1_3.gz: system connect
09/09/2007 8:05:10 AM|rosetta@home|[file_xfer] Temporarily failed download of 1SEN.pdb: system connect
09/09/2007 8:05:10 AM|rosetta@home|[file_xfer] Started download of file 1SENA.fasta
09/09/2007 8:05:10 AM|rosetta@home|[file_xfer] Started download of file abrelax_control_description.txt
09/09/2007 8:05:11 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:05:12 AM||Project communication failed: attempting access to reference site
09/09/2007 8:05:12 AM|rosetta@home|[file_xfer] Temporarily failed download of 1SENA.fasta: system connect
09/09/2007 8:05:12 AM|rosetta@home|[file_xfer] Temporarily failed download of abrelax_control_description.txt: system connect
09/09/2007 8:05:12 AM|rosetta@home|[file_xfer] Started download of file 1iibA.fasta
09/09/2007 8:05:12 AM|rosetta@home|[file_xfer] Started download of file 1iib.pdb.gz
09/09/2007 8:05:13 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:05:14 AM||Project communication failed: attempting access to reference site
09/09/2007 8:05:14 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iibA.fasta: system connect
09/09/2007 8:05:14 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iib.pdb.gz: system connect
09/09/2007 8:05:14 AM|rosetta@home|[file_xfer] Started download of file 1iibA.psipred_ss2.gz
09/09/2007 8:05:14 AM|rosetta@home|[file_xfer] Started download of file 051207_cc1iibA03_05.200_v1_3.gz
09/09/2007 8:05:15 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:05:16 AM||Project communication failed: attempting access to reference site
09/09/2007 8:05:16 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iibA.psipred_ss2.gz: system connect
09/09/2007 8:05:16 AM|rosetta@home|[file_xfer] Temporarily failed download of 051207_cc1iibA03_05.200_v1_3.gz: system connect
09/09/2007 8:05:16 AM|rosetta@home|[file_xfer] Started download of file 051207_cc1iibA09_05.200_v1_3.gz
09/09/2007 8:05:16 AM|rosetta@home|[file_xfer] Started download of file ccfrags200.txt
09/09/2007 8:05:17 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:05:18 AM||Project communication failed: attempting access to reference site
09/09/2007 8:05:18 AM|rosetta@home|[file_xfer] Temporarily failed download of 051207_cc1iibA09_05.200_v1_3.gz: system connect
09/09/2007 8:05:18 AM|rosetta@home|[file_xfer] Temporarily failed download of ccfrags200.txt: system connect
09/09/2007 8:05:19 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:05:19 AM|rosetta@home|[file_xfer] Started download of file rosetta_beta_5.78_windows_intelx86.exe
09/09/2007 8:05:19 AM|rosetta@home|[file_xfer] Started download of file boinc_aa1SENA03_05.200_v1_3.gz
09/09/2007 8:05:33 AM|rosetta@home|[file_xfer] Finished download of file boinc_aa1SENA03_05.200_v1_3.gz
09/09/2007 8:05:33 AM|rosetta@home|[file_xfer] Throughput 84645 bytes/sec
09/09/2007 8:05:33 AM|rosetta@home|[file_xfer] Started download of file boinc_aa1SENA09_05.200_v1_3.gz
09/09/2007 8:05:41 AM||Project communication failed: attempting access to reference site
09/09/2007 8:05:41 AM|rosetta@home|[file_xfer] Temporarily failed download of rosetta_beta_5.78_windows_intelx86.exe: system connect
09/09/2007 8:05:41 AM|rosetta@home|[file_xfer] Started download of file 1SEN.pdb
09/09/2007 8:05:42 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:05:55 AM||Project communication failed: attempting access to reference site
09/09/2007 8:05:55 AM|rosetta@home|[file_xfer] Temporarily failed download of boinc_aa1SENA09_05.200_v1_3.gz: system connect
09/09/2007 8:05:55 AM|rosetta@home|[file_xfer] Started download of file 1SENA.fasta
09/09/2007 8:05:56 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:06:03 AM||Project communication failed: attempting access to reference site
09/09/2007 8:06:03 AM|rosetta@home|[file_xfer] Temporarily failed download of 1SEN.pdb: system connect
09/09/2007 8:06:03 AM|rosetta@home|[file_xfer] Started download of file abrelax_control_description.txt
09/09/2007 8:06:04 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:06:17 AM||Project communication failed: attempting access to reference site
09/09/2007 8:06:17 AM|rosetta@home|[file_xfer] Temporarily failed download of 1SENA.fasta: system connect
09/09/2007 8:06:17 AM|rosetta@home|[file_xfer] Finished download of file abrelax_control_description.txt
09/09/2007 8:06:17 AM|rosetta@home|[file_xfer] Throughput 3 bytes/sec
09/09/2007 8:06:17 AM|rosetta@home|[file_xfer] Started download of file 1iibA.fasta
09/09/2007 8:06:17 AM|rosetta@home|[file_xfer] Started download of file 1iib.pdb.gz
09/09/2007 8:06:18 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:06:39 AM||Project communication failed: attempting access to reference site
09/09/2007 8:06:39 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iibA.fasta: system connect
09/09/2007 8:06:39 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iib.pdb.gz: system connect
09/09/2007 8:06:39 AM|rosetta@home|[file_xfer] Started download of file 1iibA.psipred_ss2.gz
09/09/2007 8:06:39 AM|rosetta@home|[file_xfer] Started download of file 051207_cc1iibA03_05.200_v1_3.gz
09/09/2007 8:06:40 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:07:01 AM||Project communication failed: attempting access to reference site
09/09/2007 8:07:01 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iibA.psipred_ss2.gz: system connect
09/09/2007 8:07:01 AM|rosetta@home|[file_xfer] Temporarily failed download of 051207_cc1iibA03_05.200_v1_3.gz: system connect
09/09/2007 8:07:01 AM|rosetta@home|[file_xfer] Started download of file 051207_cc1iibA09_05.200_v1_3.gz
09/09/2007 8:07:01 AM|rosetta@home|[file_xfer] Started download of file ccfrags200.txt
09/09/2007 8:07:02 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:07:15 AM|rosetta@home|[file_xfer] Finished download of file ccfrags200.txt
09/09/2007 8:07:15 AM|rosetta@home|[file_xfer] Throughput 85 bytes/sec
09/09/2007 8:07:17 AM|rosetta@home|[file_xfer] Started download of file rosetta_beta_5.78_windows_intelx86.exe
09/09/2007 8:07:19 AM||Project communication failed: attempting access to reference site
09/09/2007 8:07:19 AM|rosetta@home|[file_xfer] Temporarily failed download of rosetta_beta_5.78_windows_intelx86.exe: system connect
09/09/2007 8:07:19 AM|rosetta@home|[file_xfer] Started download of file boinc_aa1SENA09_05.200_v1_3.gz
09/09/2007 8:07:20 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:07:21 AM||Project communication failed: attempting access to reference site
09/09/2007 8:07:21 AM|rosetta@home|[file_xfer] Temporarily failed download of boinc_aa1SENA09_05.200_v1_3.gz: system connect
09/09/2007 8:07:21 AM|rosetta@home|[file_xfer] Started download of file 1SEN.pdb
09/09/2007 8:07:22 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:07:23 AM||Project communication failed: attempting access to reference site
09/09/2007 8:07:23 AM|rosetta@home|[file_xfer] Temporarily failed download of 1SEN.pdb: system connect
09/09/2007 8:07:23 AM|rosetta@home|[file_xfer] Started download of file 1SENA.fasta
09/09/2007 8:07:24 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:07:25 AM||Project communication failed: attempting access to reference site
09/09/2007 8:07:25 AM|rosetta@home|[file_xfer] Temporarily failed download of 1SENA.fasta: system connect
09/09/2007 8:07:25 AM|rosetta@home|[file_xfer] Started download of file 1iibA.fasta
09/09/2007 8:07:26 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:07:27 AM||Project communication failed: attempting access to reference site
09/09/2007 8:07:27 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iibA.fasta: system connect
09/09/2007 8:07:27 AM|rosetta@home|[file_xfer] Started download of file 1iib.pdb.gz
09/09/2007 8:07:28 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:07:29 AM||Project communication failed: attempting access to reference site
09/09/2007 8:07:29 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iib.pdb.gz: system connect
09/09/2007 8:07:29 AM|rosetta@home|[file_xfer] Started download of file 1iibA.psipred_ss2.gz
09/09/2007 8:07:30 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:07:30 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iibA.psipred_ss2.gz: system connect
09/09/2007 8:07:30 AM|rosetta@home|[file_xfer] Started download of file 051207_cc1iibA03_05.200_v1_3.gz
09/09/2007 8:07:32 AM||Project communication failed: attempting access to reference site
09/09/2007 8:07:32 AM|rosetta@home|[file_xfer] Temporarily failed download of 051207_cc1iibA03_05.200_v1_3.gz: system connect
09/09/2007 8:07:33 AM|rosetta@home|[file_xfer] Started download of file rosetta_beta_5.78_windows_intelx86.exe
09/09/2007 8:07:34 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:07:35 AM||Project communication failed: attempting access to reference site
09/09/2007 8:07:35 AM|rosetta@home|[file_xfer] Temporarily failed download of rosetta_beta_5.78_windows_intelx86.exe: system connect
09/09/2007 8:07:35 AM|rosetta@home|Backing off 1 min 0 sec on download of file rosetta_beta_5.78_windows_intelx86.exe
09/09/2007 8:07:35 AM|rosetta@home|[file_xfer] Started download of file boinc_aa1SENA09_05.200_v1_3.gz
09/09/2007 8:07:37 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:07:37 AM|rosetta@home|[file_xfer] Temporarily failed download of boinc_aa1SENA09_05.200_v1_3.gz: system connect
09/09/2007 8:07:37 AM|rosetta@home|Backing off 1 min 0 sec on download of file boinc_aa1SENA09_05.200_v1_3.gz
09/09/2007 8:07:37 AM|rosetta@home|[file_xfer] Started download of file 1SEN.pdb
09/09/2007 8:07:39 AM||Project communication failed: attempting access to reference site
09/09/2007 8:07:39 AM|rosetta@home|[file_xfer] Temporarily failed download of 1SEN.pdb: system connect
09/09/2007 8:07:39 AM|rosetta@home|Backing off 1 min 0 sec on download of file 1SEN.pdb
09/09/2007 8:07:39 AM|rosetta@home|[file_xfer] Started download of file 1SENA.fasta
09/09/2007 8:07:40 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:07:41 AM||Project communication failed: attempting access to reference site
09/09/2007 8:07:41 AM|rosetta@home|[file_xfer] Temporarily failed download of 1SENA.fasta: system connect
09/09/2007 8:07:41 AM|rosetta@home|Backing off 1 min 0 sec on download of file 1SENA.fasta
09/09/2007 8:07:41 AM|rosetta@home|[file_xfer] Started download of file 1iibA.fasta
09/09/2007 8:07:42 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:07:43 AM||Project communication failed: attempting access to reference site
09/09/2007 8:07:43 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iibA.fasta: system connect
09/09/2007 8:07:43 AM|rosetta@home|Backing off 1 min 0 sec on download of file 1iibA.fasta
09/09/2007 8:07:43 AM|rosetta@home|[file_xfer] Started download of file 1iib.pdb.gz
09/09/2007 8:07:44 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:07:45 AM||Project communication failed: attempting access to reference site
09/09/2007 8:07:45 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iib.pdb.gz: system connect
09/09/2007 8:07:45 AM|rosetta@home|Backing off 1 min 0 sec on download of file 1iib.pdb.gz
09/09/2007 8:07:45 AM|rosetta@home|[file_xfer] Started download of file 1iibA.psipred_ss2.gz
09/09/2007 8:07:46 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:07:47 AM||Project communication failed: attempting access to reference site
09/09/2007 8:07:47 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iibA.psipred_ss2.gz: system connect
09/09/2007 8:07:47 AM|rosetta@home|Backing off 1 min 0 sec on download of file 1iibA.psipred_ss2.gz
09/09/2007 8:07:47 AM|rosetta@home|[file_xfer] Started download of file 051207_cc1iibA03_05.200_v1_3.gz
09/09/2007 8:07:48 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:07:49 AM||Project communication failed: attempting access to reference site
09/09/2007 8:07:49 AM|rosetta@home|[file_xfer] Temporarily failed download of 051207_cc1iibA03_05.200_v1_3.gz: system connect
09/09/2007 8:07:49 AM|rosetta@home|Backing off 1 min 0 sec on download of file 051207_cc1iibA03_05.200_v1_3.gz
09/09/2007 8:07:50 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:08:35 AM|rosetta@home|[file_xfer] Started download of file rosetta_beta_5.78_windows_intelx86.exe
09/09/2007 8:08:57 AM||Project communication failed: attempting access to reference site
09/09/2007 8:08:57 AM|rosetta@home|[file_xfer] Temporarily failed download of rosetta_beta_5.78_windows_intelx86.exe: system connect
09/09/2007 8:08:57 AM|rosetta@home|[file_xfer] Started download of file boinc_aa1SENA09_05.200_v1_3.gz
09/09/2007 8:08:58 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:09:19 AM||Project communication failed: attempting access to reference site
09/09/2007 8:09:19 AM|rosetta@home|[file_xfer] Temporarily failed download of boinc_aa1SENA09_05.200_v1_3.gz: system connect
09/09/2007 8:09:19 AM|rosetta@home|[file_xfer] Started download of file 1SEN.pdb
09/09/2007 8:09:20 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:09:41 AM||Project communication failed: attempting access to reference site
09/09/2007 8:09:41 AM|rosetta@home|[file_xfer] Temporarily failed download of 1SEN.pdb: system connect
09/09/2007 8:09:41 AM|rosetta@home|[file_xfer] Started download of file 1SENA.fasta
09/09/2007 8:09:42 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:09:57 AM|rosetta@home|[file_xfer] Finished download of file 1SENA.fasta
09/09/2007 8:09:57 AM|rosetta@home|[file_xfer] Throughput 9 bytes/sec
09/09/2007 8:09:57 AM|rosetta@home|[file_xfer] Started download of file 1iibA.fasta
09/09/2007 8:10:19 AM||Project communication failed: attempting access to reference site
09/09/2007 8:10:20 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iibA.fasta: system connect
09/09/2007 8:10:20 AM|rosetta@home|[file_xfer] Started download of file 1iib.pdb.gz
09/09/2007 8:10:21 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:10:25 AM|rosetta@home|[file_xfer] Finished download of file 051207_cc1iibA09_05.200_v1_3.gz
09/09/2007 8:10:25 AM|rosetta@home|[file_xfer] Throughput 12322 bytes/sec
09/09/2007 8:10:26 AM|rosetta@home|[file_xfer] Started download of file rosetta_beta_5.78_windows_intelx86.exe
09/09/2007 8:10:28 AM||Project communication failed: attempting access to reference site
09/09/2007 8:10:28 AM|rosetta@home|[file_xfer] Temporarily failed download of rosetta_beta_5.78_windows_intelx86.exe: system connect
09/09/2007 8:10:28 AM|rosetta@home|[file_xfer] Started download of file boinc_aa1SENA09_05.200_v1_3.gz
09/09/2007 8:10:30 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:10:31 AM||Project communication failed: attempting access to reference site
09/09/2007 8:10:31 AM|rosetta@home|[file_xfer] Temporarily failed download of boinc_aa1SENA09_05.200_v1_3.gz: system connect
09/09/2007 8:10:31 AM|rosetta@home|[file_xfer] Started download of file 1SEN.pdb
09/09/2007 8:10:32 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:10:33 AM||Project communication failed: attempting access to reference site
09/09/2007 8:10:33 AM|rosetta@home|[file_xfer] Temporarily failed download of 1SEN.pdb: system connect
09/09/2007 8:10:33 AM|rosetta@home|[file_xfer] Started download of file 1iibA.fasta
09/09/2007 8:10:34 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:10:35 AM||Project communication failed: attempting access to reference site
09/09/2007 8:10:35 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iibA.fasta: system connect
09/09/2007 8:10:35 AM|rosetta@home|[file_xfer] Started download of file 1iibA.psipred_ss2.gz
09/09/2007 8:10:36 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:10:42 AM||Project communication failed: attempting access to reference site
09/09/2007 8:10:42 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iib.pdb.gz: system connect
09/09/2007 8:10:42 AM|rosetta@home|[file_xfer] Started download of file 051207_cc1iibA03_05.200_v1_3.gz
09/09/2007 8:10:43 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:10:57 AM||Project communication failed: attempting access to reference site
09/09/2007 8:10:57 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iibA.psipred_ss2.gz: system connect
09/09/2007 8:10:58 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:10:58 AM|rosetta@home|[file_xfer] Started download of file rosetta_beta_5.78_windows_intelx86.exe
09/09/2007 8:11:00 AM||Project communication failed: attempting access to reference site
09/09/2007 8:11:00 AM|rosetta@home|[file_xfer] Temporarily failed download of rosetta_beta_5.78_windows_intelx86.exe: system connect
09/09/2007 8:11:00 AM|rosetta@home|[file_xfer] Started download of file boinc_aa1SENA09_05.200_v1_3.gz
09/09/2007 8:11:01 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:11:02 AM||Project communication failed: attempting access to reference site
09/09/2007 8:11:02 AM|rosetta@home|[file_xfer] Temporarily failed download of boinc_aa1SENA09_05.200_v1_3.gz: system connect
09/09/2007 8:11:02 AM|rosetta@home|[file_xfer] Started download of file 1SEN.pdb
09/09/2007 8:11:03 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:11:03 AM|rosetta@home|[file_xfer] Temporarily failed download of 051207_cc1iibA03_05.200_v1_3.gz: system connect
09/09/2007 8:11:04 AM||Project communication failed: attempting access to reference site
09/09/2007 8:11:04 AM|rosetta@home|[file_xfer] Started download of file rosetta_beta_5.78_windows_intelx86.exe
09/09/2007 8:11:04 AM|rosetta@home|[file_xfer] Temporarily failed download of 1SEN.pdb: system connect
09/09/2007 8:11:04 AM|rosetta@home|[file_xfer] Started download of file 1iibA.fasta
09/09/2007 8:11:05 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:11:06 AM||Project communication failed: attempting access to reference site
09/09/2007 8:11:06 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iibA.fasta: system connect
09/09/2007 8:11:06 AM|rosetta@home|[file_xfer] Started download of file 1iib.pdb.gz
09/09/2007 8:11:08 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:11:08 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iib.pdb.gz: system connect
09/09/2007 8:11:08 AM|rosetta@home|[file_xfer] Started download of file 1iibA.psipred_ss2.gz
09/09/2007 8:11:10 AM||Project communication failed: attempting access to reference site
09/09/2007 8:11:10 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iibA.psipred_ss2.gz: system connect
09/09/2007 8:11:10 AM|rosetta@home|[file_xfer] Started download of file 051207_cc1iibA03_05.200_v1_3.gz
09/09/2007 8:11:12 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:11:12 AM|rosetta@home|[file_xfer] Temporarily failed download of 051207_cc1iibA03_05.200_v1_3.gz: system connect
09/09/2007 8:11:13 AM|rosetta@home|[file_xfer] Started download of file boinc_aa1SENA09_05.200_v1_3.gz
09/09/2007 8:11:25 AM||Project communication failed: attempting access to reference site
09/09/2007 8:11:25 AM|rosetta@home|[file_xfer] Temporarily failed download of rosetta_beta_5.78_windows_intelx86.exe: system connect
09/09/2007 8:11:25 AM|rosetta@home|[file_xfer] Started download of file 1SEN.pdb
09/09/2007 8:11:27 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:11:35 AM||Project communication failed: attempting access to reference site
09/09/2007 8:11:35 AM|rosetta@home|[file_xfer] Temporarily failed download of boinc_aa1SENA09_05.200_v1_3.gz: system connect
09/09/2007 8:11:35 AM|rosetta@home|[file_xfer] Started download of file 1iibA.fasta
09/09/2007 8:11:37 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:11:47 AM||Project communication failed: attempting access to reference site
09/09/2007 8:11:47 AM|rosetta@home|[file_xfer] Temporarily failed download of 1SEN.pdb: system connect
09/09/2007 8:11:47 AM|rosetta@home|[file_xfer] Started download of file 1iib.pdb.gz
09/09/2007 8:11:49 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:11:49 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iib.pdb.gz: system connect
09/09/2007 8:11:49 AM|rosetta@home|[file_xfer] Started download of file 1iibA.psipred_ss2.gz
09/09/2007 8:11:51 AM||Project communication failed: attempting access to reference site
09/09/2007 8:11:51 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iibA.psipred_ss2.gz: system connect
09/09/2007 8:11:51 AM|rosetta@home|[file_xfer] Started download of file 051207_cc1iibA03_05.200_v1_3.gz
09/09/2007 8:11:52 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:11:53 AM||Project communication failed: attempting access to reference site
09/09/2007 8:11:53 AM|rosetta@home|[file_xfer] Temporarily failed download of 051207_cc1iibA03_05.200_v1_3.gz: system connect
09/09/2007 8:11:54 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:11:54 AM|rosetta@home|[file_xfer] Started download of file rosetta_beta_5.78_windows_intelx86.exe
09/09/2007 8:11:56 AM||Project communication failed: attempting access to reference site
09/09/2007 8:11:56 AM|rosetta@home|[file_xfer] Temporarily failed download of rosetta_beta_5.78_windows_intelx86.exe: system connect
09/09/2007 8:11:56 AM|rosetta@home|[file_xfer] Started download of file boinc_aa1SENA09_05.200_v1_3.gz
09/09/2007 8:11:57 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:11:57 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iibA.fasta: system connect
09/09/2007 8:11:57 AM|rosetta@home|[file_xfer] Started download of file 1iib.pdb.gz
09/09/2007 8:11:58 AM||Project communication failed: attempting access to reference site
09/09/2007 8:11:58 AM|rosetta@home|[file_xfer] Temporarily failed download of boinc_aa1SENA09_05.200_v1_3.gz: system connect
09/09/2007 8:11:58 AM|rosetta@home|[file_xfer] Started download of file 1SEN.pdb
09/09/2007 8:12:00 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:12:00 AM|rosetta@home|[file_xfer] Temporarily failed download of 1SEN.pdb: system connect
09/09/2007 8:12:00 AM|rosetta@home|[file_xfer] Started download of file 1iibA.fasta
09/09/2007 8:12:02 AM||Project communication failed: attempting access to reference site
09/09/2007 8:12:02 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iibA.fasta: system connect
09/09/2007 8:12:02 AM|rosetta@home|[file_xfer] Started download of file 1iibA.psipred_ss2.gz
09/09/2007 8:12:03 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:12:19 AM||Project communication failed: attempting access to reference site
09/09/2007 8:12:19 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iib.pdb.gz: system connect
09/09/2007 8:12:19 AM|rosetta@home|[file_xfer] Started download of file 051207_cc1iibA03_05.200_v1_3.gz
09/09/2007 8:12:20 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:12:24 AM||Project communication failed: attempting access to reference site
09/09/2007 8:12:24 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iibA.psipred_ss2.gz: system connect
09/09/2007 8:12:25 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:12:25 AM|rosetta@home|[file_xfer] Started download of file rosetta_beta_5.78_windows_intelx86.exe
09/09/2007 8:12:27 AM||Project communication failed: attempting access to reference site
09/09/2007 8:12:27 AM|rosetta@home|[file_xfer] Temporarily failed download of rosetta_beta_5.78_windows_intelx86.exe: system connect
09/09/2007 8:12:27 AM|rosetta@home|Backing off 1 min 0 sec on download of file rosetta_beta_5.78_windows_intelx86.exe
09/09/2007 8:12:27 AM|rosetta@home|[file_xfer] Started download of file boinc_aa1SENA09_05.200_v1_3.gz
09/09/2007 8:12:28 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:12:29 AM||Project communication failed: attempting access to reference site
09/09/2007 8:12:29 AM|rosetta@home|[file_xfer] Temporarily failed download of boinc_aa1SENA09_05.200_v1_3.gz: system connect
09/09/2007 8:12:29 AM|rosetta@home|Backing off 1 min 0 sec on download of file boinc_aa1SENA09_05.200_v1_3.gz
09/09/2007 8:12:29 AM|rosetta@home|[file_xfer] Started download of file 1SEN.pdb
09/09/2007 8:12:30 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:12:31 AM||Project communication failed: attempting access to reference site
09/09/2007 8:12:31 AM|rosetta@home|[file_xfer] Temporarily failed download of 1SEN.pdb: system connect
09/09/2007 8:12:31 AM|rosetta@home|Backing off 1 min 0 sec on download of file 1SEN.pdb
09/09/2007 8:12:31 AM|rosetta@home|[file_xfer] Started download of file 1iibA.fasta
09/09/2007 8:12:33 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:12:33 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iibA.fasta: system connect
09/09/2007 8:12:33 AM|rosetta@home|Backing off 1 min 0 sec on download of file 1iibA.fasta
09/09/2007 8:12:33 AM|rosetta@home|[file_xfer] Started download of file 1iib.pdb.gz
09/09/2007 8:12:35 AM||Project communication failed: attempting access to reference site
09/09/2007 8:12:35 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iib.pdb.gz: system connect
09/09/2007 8:12:35 AM|rosetta@home|[file_xfer] Started download of file 1iibA.psipred_ss2.gz
09/09/2007 8:12:36 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:12:37 AM||Project communication failed: attempting access to reference site
09/09/2007 8:12:37 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iibA.psipred_ss2.gz: system connect
09/09/2007 8:12:38 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:12:38 AM|rosetta@home|[file_xfer] Started download of file 1iib.pdb.gz
09/09/2007 8:12:40 AM||Project communication failed: attempting access to reference site
09/09/2007 8:12:40 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iib.pdb.gz: system connect
09/09/2007 8:12:40 AM|rosetta@home|Backing off 1 min 0 sec on download of file 1iib.pdb.gz
09/09/2007 8:12:40 AM|rosetta@home|[file_xfer] Started download of file 1iibA.psipred_ss2.gz
09/09/2007 8:12:41 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:12:42 AM||Project communication failed: attempting access to reference site
09/09/2007 8:12:42 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iibA.psipred_ss2.gz: system connect
09/09/2007 8:12:42 AM|rosetta@home|Backing off 1 min 0 sec on download of file 1iibA.psipred_ss2.gz
09/09/2007 8:12:43 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:13:27 AM|rosetta@home|[file_xfer] Started download of file rosetta_beta_5.78_windows_intelx86.exe
09/09/2007 8:13:49 AM||Project communication failed: attempting access to reference site
09/09/2007 8:13:49 AM|rosetta@home|[file_xfer] Temporarily failed download of rosetta_beta_5.78_windows_intelx86.exe: system connect
09/09/2007 8:13:49 AM|rosetta@home|[file_xfer] Started download of file boinc_aa1SENA09_05.200_v1_3.gz
09/09/2007 8:13:50 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:14:11 AM||Project communication failed: attempting access to reference site
09/09/2007 8:14:11 AM|rosetta@home|[file_xfer] Temporarily failed download of boinc_aa1SENA09_05.200_v1_3.gz: system connect
09/09/2007 8:14:11 AM|rosetta@home|[file_xfer] Started download of file 1SEN.pdb
09/09/2007 8:14:12 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:14:33 AM||Project communication failed: attempting access to reference site
09/09/2007 8:14:33 AM|rosetta@home|[file_xfer] Temporarily failed download of 1SEN.pdb: system connect
09/09/2007 8:14:33 AM|rosetta@home|[file_xfer] Started download of file 1iibA.fasta
09/09/2007 8:14:35 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:14:56 AM||Project communication failed: attempting access to reference site
09/09/2007 8:14:56 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iibA.fasta: system connect
09/09/2007 8:14:56 AM|rosetta@home|[file_xfer] Started download of file 1iib.pdb.gz
09/09/2007 8:14:57 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:15:18 AM||Project communication failed: attempting access to reference site
09/09/2007 8:15:18 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iib.pdb.gz: system connect
09/09/2007 8:15:18 AM|rosetta@home|[file_xfer] Started download of file 1iibA.psipred_ss2.gz
09/09/2007 8:15:19 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:15:39 AM||Project communication failed: attempting access to reference site
09/09/2007 8:15:39 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iibA.psipred_ss2.gz: system connect
09/09/2007 8:15:40 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:15:40 AM|rosetta@home|[file_xfer] Started download of file rosetta_beta_5.78_windows_intelx86.exe
09/09/2007 8:15:42 AM||Project communication failed: attempting access to reference site
09/09/2007 8:15:42 AM|rosetta@home|[file_xfer] Temporarily failed download of rosetta_beta_5.78_windows_intelx86.exe: system connect
09/09/2007 8:15:42 AM|rosetta@home|[file_xfer] Started download of file boinc_aa1SENA09_05.200_v1_3.gz
09/09/2007 8:15:43 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:15:44 AM||Project communication failed: attempting access to reference site
09/09/2007 8:15:44 AM|rosetta@home|[file_xfer] Temporarily failed download of boinc_aa1SENA09_05.200_v1_3.gz: system connect
09/09/2007 8:15:44 AM|rosetta@home|[file_xfer] Started download of file 1SEN.pdb
09/09/2007 8:15:45 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:15:46 AM||Project communication failed: attempting access to reference site
09/09/2007 8:15:46 AM|rosetta@home|[file_xfer] Temporarily failed download of 1SEN.pdb: system connect
09/09/2007 8:15:46 AM|rosetta@home|[file_xfer] Started download of file 1iibA.fasta
09/09/2007 8:15:48 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:15:49 AM||Project communication failed: attempting access to reference site
09/09/2007 8:15:49 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iibA.fasta: system connect
09/09/2007 8:15:49 AM|rosetta@home|[file_xfer] Started download of file 1iib.pdb.gz
09/09/2007 8:15:51 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:15:51 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iib.pdb.gz: system connect
09/09/2007 8:15:51 AM|rosetta@home|[file_xfer] Started download of file 1iibA.psipred_ss2.gz
09/09/2007 8:15:53 AM||Project communication failed: attempting access to reference site
09/09/2007 8:15:53 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iibA.psipred_ss2.gz: system connect
09/09/2007 8:15:54 AM|rosetta@home|[file_xfer] Started download of file rosetta_beta_5.78_windows_intelx86.exe
09/09/2007 8:15:55 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:15:56 AM||Project communication failed: attempting access to reference site
09/09/2007 8:15:56 AM|rosetta@home|[file_xfer] Temporarily failed download of rosetta_beta_5.78_windows_intelx86.exe: system connect
09/09/2007 8:15:56 AM|rosetta@home|[file_xfer] Started download of file boinc_aa1SENA09_05.200_v1_3.gz
09/09/2007 8:15:57 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:15:58 AM||Project communication failed: attempting access to reference site
09/09/2007 8:15:58 AM|rosetta@home|[file_xfer] Temporarily failed download of boinc_aa1SENA09_05.200_v1_3.gz: system connect
09/09/2007 8:15:58 AM|rosetta@home|[file_xfer] Started download of file 1SEN.pdb
09/09/2007 8:15:59 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:16:00 AM||Project communication failed: attempting access to reference site
09/09/2007 8:16:00 AM|rosetta@home|[file_xfer] Temporarily failed download of 1SEN.pdb: system connect
09/09/2007 8:16:00 AM|rosetta@home|[file_xfer] Started download of file 1iibA.fasta
09/09/2007 8:16:01 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:16:02 AM||Project communication failed: attempting access to reference site
09/09/2007 8:16:02 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iibA.fasta: system connect
09/09/2007 8:16:02 AM|rosetta@home|[file_xfer] Started download of file 1iib.pdb.gz
09/09/2007 8:16:03 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:16:04 AM||Project communication failed: attempting access to reference site
09/09/2007 8:16:04 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iib.pdb.gz: system connect
09/09/2007 8:16:04 AM|rosetta@home|[file_xfer] Started download of file 1iibA.psipred_ss2.gz
09/09/2007 8:16:05 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:16:06 AM||Project communication failed: attempting access to reference site
09/09/2007 8:16:06 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iibA.psipred_ss2.gz: system connect
09/09/2007 8:16:07 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:16:07 AM|rosetta@home|[file_xfer] Started download of file rosetta_beta_5.78_windows_intelx86.exe
09/09/2007 8:16:29 AM||Project communication failed: attempting access to reference site
09/09/2007 8:16:29 AM|rosetta@home|[file_xfer] Temporarily failed download of rosetta_beta_5.78_windows_intelx86.exe: system connect
09/09/2007 8:16:29 AM|rosetta@home|[file_xfer] Started download of file boinc_aa1SENA09_05.200_v1_3.gz
09/09/2007 8:16:30 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:16:51 AM||Project communication failed: attempting access to reference site
09/09/2007 8:16:51 AM|rosetta@home|[file_xfer] Temporarily failed download of boinc_aa1SENA09_05.200_v1_3.gz: system connect
09/09/2007 8:16:51 AM|rosetta@home|[file_xfer] Started download of file 1SEN.pdb
09/09/2007 8:16:52 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:17:13 AM||Project communication failed: attempting access to reference site
09/09/2007 8:17:13 AM|rosetta@home|[file_xfer] Temporarily failed download of 1SEN.pdb: system connect
09/09/2007 8:17:13 AM|rosetta@home|[file_xfer] Started download of file 1iibA.fasta
09/09/2007 8:17:14 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:17:29 AM||Project communication failed: attempting access to reference site
09/09/2007 8:17:29 AM|rosetta@home|[file_xfer] Temporarily failed download of 051207_cc1iibA03_05.200_v1_3.gz: http error
09/09/2007 8:17:30 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:17:30 AM|rosetta@home|[file_xfer] Started download of file rosetta_beta_5.78_windows_intelx86.exe
09/09/2007 8:17:32 AM||Project communication failed: attempting access to reference site
09/09/2007 8:17:32 AM|rosetta@home|[file_xfer] Temporarily failed download of rosetta_beta_5.78_windows_intelx86.exe: system connect
09/09/2007 8:17:32 AM|rosetta@home|[file_xfer] Started download of file boinc_aa1SENA09_05.200_v1_3.gz
09/09/2007 8:17:33 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:17:34 AM||Project communication failed: attempting access to reference site
09/09/2007 8:17:34 AM|rosetta@home|[file_xfer] Temporarily failed download of boinc_aa1SENA09_05.200_v1_3.gz: system connect
09/09/2007 8:17:34 AM|rosetta@home|[file_xfer] Started download of file 1SEN.pdb
09/09/2007 8:17:35 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:17:35 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iibA.fasta: system connect
09/09/2007 8:17:35 AM|rosetta@home|[file_xfer] Started download of file 1iib.pdb.gz
09/09/2007 8:17:36 AM||Project communication failed: attempting access to reference site
09/09/2007 8:17:36 AM|rosetta@home|[file_xfer] Temporarily failed download of 1SEN.pdb: system connect
09/09/2007 8:17:36 AM|rosetta@home|[file_xfer] Started download of file 1iibA.fasta
09/09/2007 8:17:37 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:17:38 AM||Project communication failed: attempting access to reference site
09/09/2007 8:17:38 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iibA.fasta: system connect
09/09/2007 8:17:38 AM|rosetta@home|[file_xfer] Started download of file 1iibA.psipred_ss2.gz
09/09/2007 8:17:39 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:17:57 AM||Project communication failed: attempting access to reference site
09/09/2007 8:17:57 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iib.pdb.gz: system connect
09/09/2007 8:17:57 AM|rosetta@home|[file_xfer] Started download of file 051207_cc1iibA03_05.200_v1_3.gz
09/09/2007 8:17:58 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:17:59 AM||Project communication failed: attempting access to reference site
09/09/2007 8:17:59 AM|rosetta@home|[file_xfer] Temporarily failed download of 051207_cc1iibA03_05.200_v1_3.gz: system connect
09/09/2007 8:18:00 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:18:00 AM|rosetta@home|[file_xfer] Started download of file rosetta_beta_5.78_windows_intelx86.exe
09/09/2007 8:18:00 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iibA.psipred_ss2.gz: system connect
09/09/2007 8:18:00 AM|rosetta@home|[file_xfer] Started download of file 051207_cc1iibA03_05.200_v1_3.gz
09/09/2007 8:18:02 AM||Project communication failed: attempting access to reference site
09/09/2007 8:18:02 AM|rosetta@home|[file_xfer] Temporarily failed download of rosetta_beta_5.78_windows_intelx86.exe: system connect
09/09/2007 8:18:02 AM|rosetta@home|Backing off 1 min 0 sec on download of file rosetta_beta_5.78_windows_intelx86.exe
09/09/2007 8:18:02 AM|rosetta@home|[file_xfer] Started download of file boinc_aa1SENA09_05.200_v1_3.gz
09/09/2007 8:18:02 AM|rosetta@home|[file_xfer] Temporarily failed download of 051207_cc1iibA03_05.200_v1_3.gz: system connect
09/09/2007 8:18:02 AM|rosetta@home|Backing off 1 min 0 sec on download of file 051207_cc1iibA03_05.200_v1_3.gz
09/09/2007 8:18:03 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:18:03 AM|rosetta@home|[file_xfer] Started download of file 1SEN.pdb
09/09/2007 8:18:04 AM||Project communication failed: attempting access to reference site
09/09/2007 8:18:04 AM|rosetta@home|[file_xfer] Temporarily failed download of boinc_aa1SENA09_05.200_v1_3.gz: system connect
09/09/2007 8:18:04 AM|rosetta@home|Backing off 1 min 0 sec on download of file boinc_aa1SENA09_05.200_v1_3.gz
09/09/2007 8:18:04 AM|rosetta@home|[file_xfer] Started download of file 1iibA.fasta
09/09/2007 8:18:06 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:18:06 AM|rosetta@home|[file_xfer] Temporarily failed download of 1SEN.pdb: system connect
09/09/2007 8:18:06 AM|rosetta@home|Backing off 1 min 0 sec on download of file 1SEN.pdb
09/09/2007 8:18:06 AM|rosetta@home|[file_xfer] Started download of file 1iib.pdb.gz
09/09/2007 8:18:07 AM||Project communication failed: attempting access to reference site
09/09/2007 8:18:07 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iibA.fasta: system connect
09/09/2007 8:18:07 AM|rosetta@home|Backing off 1 min 0 sec on download of file 1iibA.fasta
09/09/2007 8:18:07 AM|rosetta@home|[file_xfer] Started download of file 1iibA.psipred_ss2.gz
09/09/2007 8:18:08 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:18:08 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iib.pdb.gz: system connect
09/09/2007 8:18:09 AM||Project communication failed: attempting access to reference site
09/09/2007 8:18:09 AM|rosetta@home|[file_xfer] Started download of file 1iib.pdb.gz
09/09/2007 8:18:09 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iibA.psipred_ss2.gz: system connect
09/09/2007 8:18:10 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:18:10 AM|rosetta@home|[file_xfer] Started download of file 1iibA.psipred_ss2.gz
09/09/2007 8:18:11 AM||Project communication failed: attempting access to reference site
09/09/2007 8:18:11 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iib.pdb.gz: system connect
09/09/2007 8:18:11 AM|rosetta@home|Backing off 1 min 0 sec on download of file 1iib.pdb.gz
09/09/2007 8:18:12 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:18:12 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iibA.psipred_ss2.gz: system connect
09/09/2007 8:18:12 AM|rosetta@home|Backing off 1 min 0 sec on download of file 1iibA.psipred_ss2.gz
09/09/2007 8:19:03 AM|rosetta@home|[file_xfer] Started download of file rosetta_beta_5.78_windows_intelx86.exe
09/09/2007 8:19:03 AM|rosetta@home|[file_xfer] Started download of file 051207_cc1iibA03_05.200_v1_3.gz
09/09/2007 8:19:24 AM||Project communication failed: attempting access to reference site
09/09/2007 8:19:24 AM|rosetta@home|[file_xfer] Temporarily failed download of rosetta_beta_5.78_windows_intelx86.exe: system connect
09/09/2007 8:19:24 AM|rosetta@home|[file_xfer] Started download of file boinc_aa1SENA09_05.200_v1_3.gz
09/09/2007 8:19:25 AM|rosetta@home|[file_xfer] Temporarily failed download of 051207_cc1iibA03_05.200_v1_3.gz: system connect
09/09/2007 8:19:26 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:19:26 AM|rosetta@home|[file_xfer] Started download of file rosetta_beta_5.78_windows_intelx86.exe
09/09/2007 8:19:36 AM|rosetta@home|[file_xfer] Finished download of file rosetta_beta_5.78_windows_intelx86.exe
09/09/2007 8:19:36 AM|rosetta@home|[file_xfer] Throughput 300435 bytes/sec
09/09/2007 8:19:36 AM|rosetta@home|[file_xfer] Started download of file 1SEN.pdb
09/09/2007 8:19:46 AM||Project communication failed: attempting access to reference site
09/09/2007 8:19:46 AM|rosetta@home|[file_xfer] Temporarily failed download of boinc_aa1SENA09_05.200_v1_3.gz: system connect
09/09/2007 8:19:46 AM|rosetta@home|[file_xfer] Started download of file 1iibA.fasta
09/09/2007 8:19:47 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:19:58 AM||Project communication failed: attempting access to reference site
09/09/2007 8:19:58 AM|rosetta@home|[file_xfer] Temporarily failed download of 1SEN.pdb: system connect
09/09/2007 8:19:58 AM|rosetta@home|[file_xfer] Started download of file 1iib.pdb.gz
09/09/2007 8:19:59 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:20:08 AM||Project communication failed: attempting access to reference site
09/09/2007 8:20:08 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iibA.fasta: system connect
09/09/2007 8:20:08 AM|rosetta@home|[file_xfer] Started download of file 1iibA.psipred_ss2.gz
09/09/2007 8:20:09 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:20:20 AM||Project communication failed: attempting access to reference site
09/09/2007 8:20:20 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iib.pdb.gz: system connect
09/09/2007 8:20:20 AM|rosetta@home|[file_xfer] Started download of file 051207_cc1iibA03_05.200_v1_3.gz
09/09/2007 8:20:22 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:20:25 AM|rosetta@home|[file_xfer] Finished download of file 051207_cc1iibA03_05.200_v1_3.gz
09/09/2007 8:20:25 AM|rosetta@home|[file_xfer] Throughput 280613 bytes/sec
09/09/2007 8:20:26 AM|rosetta@home|[file_xfer] Started download of file boinc_aa1SENA09_05.200_v1_3.gz
09/09/2007 8:20:30 AM||Project communication failed: attempting access to reference site
09/09/2007 8:20:30 AM|rosetta@home|[file_xfer] Temporarily failed download of 1iibA.psipred_ss2.gz: system connect
09/09/2007 8:20:32 AM||Access to reference site succeeded - project servers may be temporarily down.
09/09/2007 8:20:32 AM|rosetta@home|[file_xfer] Started download of file 1SEN.pdb
09/09/2007 8:20:34 AM|rosetta@home|[file_xfer] Finished download of file 1SEN.pdb
09/09/2007 8:20:34 AM|rosetta@home|[file_xfer] Throughput 76934 bytes/sec
09/09/2007 8:20:34 AM|rosetta@home|[file_xfer] Started download of file 1iibA.fasta
09/09/2007 8:20:36 AM|rosetta@home|[file_xfer] Finished download of file 1iibA.fasta
09/09/2007 8:20:36 AM|rosetta@home|[file_xfer] Throughput 292 bytes/sec
09/09/2007 8:20:36 AM|rosetta@home|[file_xfer] Started download of file 1iib.pdb.gz
09/09/2007 8:20:37 AM|rosetta@home|[file_xfer] Finished download of file 1iib.pdb.gz
09/09/2007 8:20:37 AM|rosetta@home|[file_xfer] Throughput 16151 bytes/sec
09/09/2007 8:20:37 AM|rosetta@home|[file_xfer] Started download of file 1iibA.psipred_ss2.gz
09/09/2007 8:20:38 AM|rosetta@home|[file_xfer] Finished download of file boinc_aa1SENA09_05.200_v1_3.gz
09/09/2007 8:20:38 AM|rosetta@home|[file_xfer] Throughput 287640 bytes/sec
09/09/2007 8:20:38 AM|rosetta@home|[file_xfer] Finished download of file 1iibA.psipred_ss2.gz
09/09/2007 8:20:38 AM|rosetta@home|[file_xfer] Throughput 12129 bytes/sec
09/09/2007 8:20:39 AM|rosetta@home|Starting sen15_200_BOINC_MFR_ABRELAX_CONTROL_1965_14084_2
09/09/2007 8:20:40 AM|rosetta@home|Starting task sen15_200_BOINC_MFR_ABRELAX_CONTROL_1965_14084_2 using rosetta_beta version 578
09/09/2007 8:20:40 AM|rosetta@home|Starting CNTRL_01ABRELAX_SAVE_ALL_OUT_-1iibA-_filters_1782_488768_0
09/09/2007 8:20:40 AM|rosetta@home|Starting task CNTRL_01ABRELAX_SAVE_ALL_OUT_-1iibA-_filters_1782_488768_0 using rosetta version 569
09/09/2007 8:42:47 AM|rosetta@home|Sending scheduler request: To fetch work
09/09/2007 8:42:47 AM|rosetta@home|Requesting 66 seconds of new work
09/09/2007 8:42:52 AM|rosetta@home|Scheduler RPC succeeded
09/09/2007 8:42:52 AM|rosetta@home|Message from server: Project encountered internal error: shared memory
09/09/2007 8:42:52 AM|rosetta@home|Deferring communication for 1 hr 0 min 0 sec
09/09/2007 8:42:52 AM|rosetta@home|Reason: project is down
09/09/2007 8:49:59 AM|rosetta@home|[file_xfer] Started upload of file apo_lfabp_BOINC_MFR_ABRELAX_CONTROL_2015_39695_0_0
09/09/2007 8:50:01 AM|rosetta@home|[file_xfer] Finished upload of file apo_lfabp_BOINC_MFR_ABRELAX_CONTROL_2015_39695_0_0
09/09/2007 8:50:01 AM|rosetta@home|[file_xfer] Throughput 33436 bytes/sec
09/09/2007 9:42:53 AM|rosetta@home|Sending scheduler request: To report completed tasks
09/09/2007 9:42:53 AM|rosetta@home|Requesting 22647 seconds of new work, and reporting 1 completed tasks
09/09/2007 9:42:58 AM|rosetta@home|Scheduler RPC succeeded
09/09/2007 9:42:58 AM|rosetta@home|Message from server: Project encountered internal error: shared memory
09/09/2007 9:42:58 AM|rosetta@home|Deferring communication for 1 hr 0 min 0 sec
09/09/2007 9:42:58 AM|rosetta@home|Reason: project is down

END LOG EXTRACT
39) Message boards : Cafe Rosetta : Last one to post here wins! #2 (Message 45845)
Posted 9 Sep 2007 by Profile hedera
Post:
Congratulations for getting things back up and running! Having worked with SAN myself in my previous job, I'm well aware of the pitfalls associated with having all your data in that one big basket...

40) Message boards : Number crunching : Problems with Rosetta version 5.51 (Message 37898)
Posted 17 Mar 2007 by Profile hedera
Post:
I can't attach Rosetta at all. I brought my machine up this afternoon around 17:30 PDT and BOINC has had the little red and white circle ever since - it's now 21:14 PDT. I try to attach Rosetta, and put in my password, and nothing happens. Help?? I'd LOVE to be able to test the new graphics.

OOPS. Never mind. I've been working with Unix systems too long. I found a post in the Windows section which said, basically, kill BOINC and restart it; so I did, and it connected right up. I do have a Microsoft box at home, after all... sorry. I'll go play with the graphics now.


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