Problems and Technical Issues with Rosetta@home

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Mr P Hucker
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Message 104596 - Posted: 31 Jan 2022, 1:23:03 UTC - in response to Message 104594.  

Looks like a small batch of 600,000 Rosetta 4.2 tasks.
Got na10v7nt on my computers.

Get it wiped off quick , it makes a mess if it dry`s on
ROTFPMSL!

Yup, and still some available, surprisingly
Due to Boinc being stupid, you may get some of mine. A computer which runs only 6 hours a day has just downloaded too many to do in that time.
Although they say they'll take 8 hours each, I notice some are a lot faster nowadays, so I'll see if they get done.

Looks like the `na` tasks take about 3 hours to crunch,
Ryzen 9 3900XT, should be pretty fast then. Only runs in the afternoon. Evenings Boinc is off for playing games, nighttime and morning lie-ins, don't need to heat the house so it's off to save money.
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Mr P Hucker
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Message 104597 - Posted: 31 Jan 2022, 1:23:52 UTC - in response to Message 104595.  

I have set crunching time to one day and 12 hours in settings.
Eh? It takes as long as it takes.
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Falconet

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Message 104598 - Posted: 31 Jan 2022, 10:09:07 UTC

My na's are running at 16 CPU hours per my runtime setting.
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Falconet

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Message 104599 - Posted: 31 Jan 2022, 10:16:25 UTC - in response to Message 104597.  
Last modified: 31 Jan 2022, 10:19:07 UTC

I have set crunching time to one day and 12 hours in settings.
Eh? It takes as long as it takes.



There's a setting on Rosetta preferences that allows you to specify for how long you want each Rosetta 4.2 task to run.
It's called "Target CPU run time" and you can set that from 2 CPU hour to 36 CPU hours.
Rosetta 4.2 tasks will try to respect that setting. You can change the setting at any time and a project update will change the runtime of any running tasks.

To avoid Rosetta 4.2 tasks from running for an "unlimited" time (say, on a "stuck" model), there is a built-in feature called watchdog that will kill any Rosetta task once it passes the Target CPU runtime setting + 10 CPU hours. Eg. CPU target is 8 hours, watchdog will kill the task at 18 hours of CPU time.
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eMachine

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Message 104601 - Posted: 31 Jan 2022, 13:27:26 UTC

i get an insufficient memory notice:

Rosetta@home: Notice from server
Rosetta needs 3337.86 MB RAM but only 2879.42 MB is available for use.
1/30/2022 5:47:45 AM

My mobo is constrained to 4gb of RAM, I will never have more, even if I wanted. I know it is an underpowered machine.

Should I withdraw from Rosetta@home?

For info this is my setup:
Operating System Windows 10 Home 64-bit
CPU Intel Pentium E6600 @ 3.06GHz
RAM 4.00GB Single-Channel DDR2 @ 400MHz (6-5-5-17)
Motherboard eMachines EMCP73VT-PM (CPU 1) 33 °C

Thanks
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Profile dcdc

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Message 104603 - Posted: 31 Jan 2022, 13:45:57 UTC - in response to Message 104601.  

i get an insufficient memory notice:

Rosetta@home: Notice from server
Rosetta needs 3337.86 MB RAM but only 2879.42 MB is available for use.
1/30/2022 5:47:45 AM

My mobo is constrained to 4gb of RAM, I will never have more, even if I wanted. I know it is an underpowered machine.

Should I withdraw from Rosetta@home?

For info this is my setup:
Operating System Windows 10 Home 64-bit
CPU Intel Pentium E6600 @ 3.06GHz
RAM 4.00GB Single-Channel DDR2 @ 400MHz (6-5-5-17)
Motherboard eMachines EMCP73VT-PM (CPU 1) 33 °C

Thanks

You should be able to run the Rosetta 4.20 tasks when they are available, if your settings allow enough RAM and disk space.
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Sid Celery

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Message 104605 - Posted: 31 Jan 2022, 14:02:06 UTC - in response to Message 104590.  

Looks like a small batch of 600,000 Rosetta 4.2 tasks.
Got na10v7nt on my computers.

Yup, and still some available, surprisingly


600k?
Where?

Rosetta 29685 297048 2.78 (0.08 - 55.18) 6950
rosetta python projects 4999 11515 4.62 (0.6 - 59.22) 981
Tasks ready to send 34679

At that time last night, the 29,685 were Rosetta 4.20 tasks ready to send.
I looked again this morning - all gone already.
Which is good for me - usually I don't mention they were there at all until after they've all gone
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Sid Celery

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Message 104607 - Posted: 31 Jan 2022, 14:08:19 UTC - in response to Message 104601.  

I get an insufficient memory notice:

Rosetta@home: Notice from server
Rosetta needs 3337.86 MB RAM but only 2879.42 MB is available for use.
1/30/2022 5:47:45 AM

My mobo is constrained to 4gb of RAM, I will never have more, even if I wanted. I know it is an underpowered machine.

Should I withdraw from Rosetta@home?

For info this is my setup:
Operating System Windows 10 Home 64-bit
CPU Intel Pentium E6600 @ 3.06GHz
RAM 4.00GB Single-Channel DDR2 @ 400MHz (6-5-5-17)
Motherboard eMachines EMCP73VT-PM (CPU 1) 33 °C

Thanks

It's tight, but if you go into Boinc Computing Preferences and on the Disk and Memory tab allow 95% for RAM, it should just about fit in the tasks asking for 3337.86Mb
Don't worry that it sounds a lot to give to Boinc. We've found the tasks generally don't use anything like that full amount in practise. It just allows you to get over this limit at the time of task launch.
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Mr P Hucker
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Message 104609 - Posted: 31 Jan 2022, 19:04:09 UTC - in response to Message 104607.  

[quote]It's tight, but if you go into Boinc Computing Preferences and on the Disk and Memory tab allow 95% for RAM, it should just about fit in the tasks asking for 3337.86Mb
Don't worry that it sounds a lot to give to Boinc. We've found the tasks generally don't use anything like that full amount in practise. It just allows you to get over this limit at the time of task launch.
I've put mine to 100%. It's only a rough guide anyway. Numberfields or something like that goes over what I ask. Most projects never reach it.
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Mr P Hucker
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Message 104610 - Posted: 31 Jan 2022, 19:04:49 UTC - in response to Message 104599.  

I have set crunching time to one day and 12 hours in settings.
Eh? It takes as long as it takes.



There's a setting on Rosetta preferences that allows you to specify for how long you want each Rosetta 4.2 task to run.
It's called "Target CPU run time" and you can set that from 2 CPU hour to 36 CPU hours.
Rosetta 4.2 tasks will try to respect that setting. You can change the setting at any time and a project update will change the runtime of any running tasks.

To avoid Rosetta 4.2 tasks from running for an "unlimited" time (say, on a "stuck" model), there is a built-in feature called watchdog that will kill any Rosetta task once it passes the Target CPU runtime setting + 10 CPU hours. Eg. CPU target is 8 hours, watchdog will kill the task at 18 hours of CPU time.
I have heard of this option, but I don't understand the point of it. Presumably the scientists have already chosen the best time. Why adjust it?
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Message 104611 - Posted: 31 Jan 2022, 19:15:41 UTC

hurry up....28 4.2 tasks waiting LMAO
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Message 104612 - Posted: 31 Jan 2022, 23:05:31 UTC

So, since I could not get tasks for my regular BOINC (Rosetta) client, I went ahead and removed the old BOINC install, and reluctantly installed the bloated one with Virtual Box instead. This one uses an inordinate amount of resources even before crunching any numbers. On top of that, tasks run for something between 20 seconds and a few minutes and then fail. Not one single task actually went past 7 minutes. 100% of tasks failed with calculation errors. Right now, the computer sits idle with that big fat thing doing nothing, showing 5 failed tasks - I am used to seeing 8 tasks happily being crunched.

Now, this is a Core I7 with 32 GB ram running on a fully patched Windows 10 and 2 TB of available disk space. ( I have several computers using Windows or Linux Mint running BOINC - This is the guinea pig computer trying out the new client) Nothing else ever failed on it. I am thoroughly not impressed right now (i feel a need to confirm my state of mind in case the tone so far does not indicate it - hopefully this is not going to get me locked out). I tried to find settings that I could perhaps tweak, to no avail. I am seriously considering dumping BOINC and Rosetta altogether. But in desperation, I am looking for a glimmer of hope here. Is there some way to get this to work properly?

Oh, getting that off my chest does feel good... So, anyone with tips on making this contraption work, I owe a debt of gratitude. ;-)
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Message 104614 - Posted: 31 Jan 2022, 23:17:59 UTC - in response to Message 104612.  

For instant failures every time, i.e. VBox not detected or doesn't start at all, see #4 here:
https://boinc.bakerlab.org/rosetta/forum_thread.php?id=14886&postid=104574

For: CPU load drops to 0 within 1 minute, see the rest of that post above.

For occasional errors, typically after a few hours, see:
https://boinc.bakerlab.org/rosetta/forum_thread.php?id=14897

Sounds like the middle one is affecting your machine. You can open the VirtualBox manager and see the screen output for a running VM to see any errors.
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Message 104618 - Posted: 31 Jan 2022, 23:21:56 UTC - in response to Message 104612.  

So, since I could not get tasks for my regular BOINC (Rosetta) client, I went ahead and removed the old BOINC install, and reluctantly installed the bloated one with Virtual Box instead. This one uses an inordinate amount of resources even before crunching any numbers. On top of that, tasks run for something between 20 seconds and a few minutes and then fail. Not one single task actually went past 7 minutes. 100% of tasks failed with calculation errors. Right now, the computer sits idle with that big fat thing doing nothing, showing 5 failed tasks - I am used to seeing 8 tasks happily being crunched.

Now, this is a Core I7 with 32 GB ram running on a fully patched Windows 10 and 2 TB of available disk space. ( I have several computers using Windows or Linux Mint running BOINC - This is the guinea pig computer trying out the new client) Nothing else ever failed on it. I am thoroughly not impressed right now (i feel a need to confirm my state of mind in case the tone so far does not indicate it - hopefully this is not going to get me locked out). I tried to find settings that I could perhaps tweak, to no avail. I am seriously considering dumping BOINC and Rosetta altogether. But in desperation, I am looking for a glimmer of hope here. Is there some way to get this to work properly?

Oh, getting that off my chest does feel good... So, anyone with tips on making this contraption work, I owe a debt of gratitude. ;-)
Give up and attach to World Community Grid, Sidock, etc.
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Message 104619 - Posted: 1 Feb 2022, 0:33:48 UTC

LouisD you have infected your computed with VirtualPox ,
its not a virus its just a new way of going nowhere fast
It took many months for the Rosetta team to develop the a custom build of Rosetta gon Boinc to use maximal resources [they have trimmed it a bit]
{Though they can run things in a virtual box that they cant do outside of one }
The error messages that the VB python work can produce are long , short and sometimes `far out man`
Do have a go at getting it to work , you my win , or in the end give up on it.
Some computers run it with no problems ,
others can run anything but the Python work units.
You may find that some of your other computers will run it without problems ,
it is impossible to know until you try and there will be no good reason why some work and others dont
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Message 104620 - Posted: 1 Feb 2022, 0:58:30 UTC - in response to Message 104614.  

Thank you for the insights. As it turns out, virtualization was not enabled in the bios for that computer. I would have sworn on my first born head that it was... That is now fixed. But tasks are not available anymore on the server. Oh well...

In the mean time, I signed up for World Community Grid. They have tasks available.
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Message 104621 - Posted: 1 Feb 2022, 1:02:49 UTC - in response to Message 104620.  
Last modified: 1 Feb 2022, 1:03:26 UTC

Maybe server decided to disable virtualbox tasks for your computer?
https://boinc.bakerlab.org/rosetta/forum_thread.php?id=14850#103842
https://imgur.com/KhnsqGU
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Mr P Hucker
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Message 104622 - Posted: 1 Feb 2022, 1:03:17 UTC - in response to Message 104620.  
Last modified: 1 Feb 2022, 1:04:08 UTC

Thank you for the insights. As it turns out, virtualization was not enabled in the bios for that computer. I would have sworn on my first born head that it was... That is now fixed. But tasks are not available anymore on the server. Oh well...

In the mean time, I signed up for World Community Grid. They have tasks available.
Cancer and Covid. They used to have loads of African Rainfall, TB, Childhood Cancer, all sorts. Covid sometimes (very occasionally) gives you GPU work, so make sure that's enabled. In the meantime they're ploughing through the cancer work really fast since the covid is fairly rare (the scientists can't keep up with our computers) and Rainfall is having technical problems with the programming.

Why aren't you getting pythons now? They're always available.
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LouisD

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Message 104623 - Posted: 1 Feb 2022, 1:06:33 UTC - in response to Message 104619.  

Virtual Box is not necessarily bad. But, in the Windows world I prefer Hyper-V (I run a few Windows Server 2019 Hyper-V servers) and in the Linux world, I like KVM better than Virtual Box. But I don't currently run productive KVM servers. Only test stuff. It is the plan that when Win Hyper-V server 2019 becomes unsupported, I will move VM's to a KVM server.

I feel that creating Virtual box VM's for BOINC is overkill and gross abuse of volunteered resources. Perhaps someone can explain, I might change mi mind if I am missing something here.

Anyway, thanks for your post. It was entertaining. :-)
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kotenok2000
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Message 104624 - Posted: 1 Feb 2022, 1:07:57 UTC - in response to Message 104622.  
Last modified: 1 Feb 2022, 1:10:15 UTC

Too many errors returned.
Server decided to disable python wus for the computer. you have to press allow at your host at
https://boinc.bakerlab.org/rosetta/hosts_user.php
i have left a screenshot several posts back
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Message boards : Number crunching : Problems and Technical Issues with Rosetta@home



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