Message boards : Number crunching : Minirosetta 3.54
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[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 1861 Credit: 8,161,875 RAC: 8,131 |
732848733 ERROR: Can't create a polymer bond after residue 239 due to incompatible type: ALA_p:CtermProteinFull ERROR:: Exit from: ......srccoreconformationConformation.cc line: 643 |
Gray Handcock Send message Joined: 26 Sep 05 Posts: 20 Credit: 2,018,415 RAC: 0 |
Hello I recently installed Debian Jessie 64-bit on an Intel i7 box with just the basic system tools, Samba and the Boinc-client. This is command-line only - done as a file-server install so no GUI. I am getting a LOT of compute errors - below is just the one page: 735265145 666160586 17 May 2015 17:36:01 UTC 17 May 2015 22:19:26 UTC Over Client error Compute error 4.55 0.05 --- 735264415 666159908 17 May 2015 17:27:45 UTC 17 May 2015 22:37:37 UTC Over Client error Compute error 2.22 0.02 --- 735264319 666159812 17 May 2015 17:31:53 UTC 17 May 2015 22:19:26 UTC Over Client error Compute error 3.01 0.03 --- 735263156 666158694 17 May 2015 17:23:33 UTC 17 May 2015 22:19:26 UTC Over Client error Compute error 3.76 0.04 --- 735262945 666158497 17 May 2015 17:19:23 UTC 17 May 2015 22:37:37 UTC Over Client error Compute error 2.00 0.02 --- 735262179 666157804 17 May 2015 17:11:07 UTC 17 May 2015 22:19:26 UTC Over Client error Compute error 1.01 0.01 --- 735261760 666157386 17 May 2015 17:15:14 UTC 17 May 2015 22:19:26 UTC Over Client error Compute error 4.65 0.05 --- 735261098 666156741 17 May 2015 17:06:59 UTC 17 May 2015 22:19:26 UTC Over Client error Compute error 4.92 0.06 --- 735260316 666156003 17 May 2015 17:02:50 UTC 17 May 2015 22:19:26 UTC Over Client error Compute error 4.76 0.05 --- 735259902 666155598 17 May 2015 16:58:42 UTC 17 May 2015 22:19:26 UTC Over Client error Compute error 4.63 0.05 --- 735259688 666155396 17 May 2015 16:54:34 UTC 17 May 2015 22:19:26 UTC Over Client error Compute error 4.88 0.05 --- 735258808 666154613 17 May 2015 16:50:26 UTC 17 May 2015 22:19:26 UTC Over Client error Compute error 3.82 0.04 --- 735258672 666154477 17 May 2015 16:46:18 UTC 17 May 2015 22:37:37 UTC Over Client error Compute error 0.80 0.01 --- 735258071 666153955 17 May 2015 16:42:09 UTC 17 May 2015 22:19:26 UTC Over Client error Compute error 4.44 0.05 --- 735257419 666153326 17 May 2015 16:38:00 UTC 17 May 2015 22:37:37 UTC Over Client error Compute error 1.53 0.02 --- 735257050 666153003 17 May 2015 16:33:51 UTC 17 May 2015 22:19:26 UTC Over Client error Downloading 0.00 0.00 --- 735256597 666152571 17 May 2015 16:29:44 UTC 17 May 2015 22:19:26 UTC Over Client error Compute error 5.52 0.06 --- 735255994 666152024 17 May 2015 16:21:29 UTC 17 May 2015 22:19:26 UTC Over Client error Compute error 0.00 0.00 --- 735255589 666151620 17 May 2015 16:25:36 UTC 17 May 2015 22:19:26 UTC Over Client error Compute error 4.61 0.05 --- Please let me know if I need to provide any other info ? Thanks |
Timo Send message Joined: 9 Jan 12 Posts: 185 Credit: 45,641,936 RAC: 36 |
Hello Just took a look at one of your error'd workunits: Unpacking WU data ... ... from what I can see either your disk is full, not enough space is available/allocated in your boinc setup, or there's some other type of filesystem issue. Wish I could be more help, but hopefully this points you in the right direction. PS - these aren't issues with the workunits themselves as your error'd WUs are being re-run successfully on other clients. On the good side, I do see that your latest work unit did not error out so maybe you fixed the issue? |
Gray Handcock Send message Joined: 26 Sep 05 Posts: 20 Credit: 2,018,415 RAC: 0 |
Hello Hello Timo Thanks for that suggestion - I have just finished re-installing Debian Jessie again - but this time I have allocated 100 GB for the system - in the first install I took the default suggested partition sizes (where /, var, tmp and home are all separate) - which included 9 GB for system - which would have been fine for a normal server, but possibly not when Boinc is included... Rosetta has been re-attached. Here's hoping this runs flawlessly ! :) Thank you |
Gray Handcock Send message Joined: 26 Sep 05 Posts: 20 Credit: 2,018,415 RAC: 0 |
Hello Hello Timo An update: so far the work units seem to be succeeding - barring one that happened around the time that my UPS ran out of power and the server went down... Thank you |
Timo Send message Joined: 9 Jan 12 Posts: 185 Credit: 45,641,936 RAC: 36 |
Glad to hear that it's working. Happy crunching sir! XD |
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Minirosetta 3.54
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