Minirosetta 1.82/1.88

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svincent

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Message 62393 - Posted: 23 Jul 2009, 16:21:41 UTC

267566898 failed on Mac with a bus error.

Fullatom mode ..
Starting work on structure: S_shuffle_00004 <--- S_00027_0002086_0_test_8.0.out
SIGBUS: bus error

.
.
.
Crashed executable name: minirosetta_1.82_i686-apple-darwin
built using BOINC library version 6.5.0
Machine type Intel 80486 (32-bit executable)
System version: Macintosh OS 10.5.7 build 9J61
Thu Jul 23 04:39:06 2009

sh: /usr/bin/atos: No such file or directory
0 0x00703b59 SIGPIPE: write on a pipe with no reader
1 0x004c2bd6 SIGPIPE: write on a pipe with no reader
2 0x9637d2bb SIGPIPE: write on a pipe with no reader
3 0xffffffff SIGPIPE: write on a pipe with no reader

etc.
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P . P . L .

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Message 62399 - Posted: 23 Jul 2009, 22:01:07 UTC

This one has errored twice, ran for 3 min's.

https://boinc.bakerlab.org/rosetta/workunit.php?wuid=243890681

Thu 23 Jul 2009 21:46:01 EST|rosetta@home|Output file lr8_score12_dun08_run01_rlbd_1bq9_IGNORE_THE_REST_DECOY_12998_864_1 for task absent

<core_client_version>6.2.14</core_client_version>
<![CDATA[
<message>
process exited with code 193 (0xc1, -63)
</message>


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jwleaf2

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Message 62400 - Posted: 23 Jul 2009, 22:31:08 UTC

For several weeks this messages shows up a lot:

Restarting [name-of-task] using minirosetta version 182
Task [name-of-task] exited with zero status but no 'finished' file
If this happens repeatedly you may need to reset the project.

After about half an hour of this, Rosetta seems to move on to another task, but memory is not freed. The hanging processes can be deleted manually using Process Explorer. Resetting the project does not keep the problem from returning.

This problem happens on one of my Vista Home Premium systems, a laptop with an Intel Core2 Dual P7350 processor, but not on the other computer, a desktop with an Intel Core2 Quad Q8200 processor. The operating temperature of the problem laptop computer sometimes creeps up near the published CPU limit of 90degC. It is controlled by a fan blowing across the laptop and by restricting Rosetta CPU usage to 70%. Could hardware stress explain this problem?
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RatMotor

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Message 62404 - Posted: 24 Jul 2009, 4:38:20 UTC

https://boinc.bakerlab.org/rosetta/result.php?resultid=267162598

Ran for ~17 hours, stalled at 60.274% for over an hour - clicking "Show graphics" in the BOINC manager only resulted in "program not responding" errors
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Profile ByRad
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Message 62411 - Posted: 24 Jul 2009, 9:48:44 UTC

Windows error report:

And its logfile:
<?xml version="1.0" encoding="UTF-16"?>
<DATABASE>
<EXE NAME="minirosetta_1.82_windows_intelx86.exe" FILTER="GRABMI_FILTER_PRIVACY">
<MATCHING_FILE NAME="minirosetta_1.82_windows_intelx86.exe" SIZE="9027584" CHECKSUM="0x1B4884C6" MODULE_TYPE="WIN32" PE_CHECKSUM="0x89E7B8" LINKER_VERSION="0x0" LINK_DATE="07/13/2009 21:14:23" UPTO_LINK_DATE="07/13/2009 21:14:23" />
<MATCHING_FILE NAME="minirosetta_graphics_1.64_windows_intelx86.exe" SIZE="2498560" CHECKSUM="0x68E6C809" MODULE_TYPE="WIN32" PE_CHECKSUM="0x26DABE" LINKER_VERSION="0x0" LINK_DATE="04/28/2009 20:31:11" UPTO_LINK_DATE="04/28/2009 20:31:11" />
<MATCHING_FILE NAME="rosetta_beta_5.98_windows_intelx86.exe" SIZE="2683904" CHECKSUM="0xE577941B" MODULE_TYPE="WIN32" PE_CHECKSUM="0x0" LINKER_VERSION="0x0" LINK_DATE="06/24/2008 20:49:17" UPTO_LINK_DATE="06/24/2008 20:49:17" />
</EXE>
<EXE NAME="ntdll.dll" FILTER="GRABMI_FILTER_THISFILEONLY">
<MATCHING_FILE NAME="ntdll.dll" SIZE="714752" CHECKSUM="0xC695BA95" BIN_FILE_VERSION="5.1.2600.5755" BIN_PRODUCT_VERSION="5.1.2600.5755" PRODUCT_VERSION="5.1.2600.5755" FILE_DESCRIPTION="NT Layer DLL" COMPANY_NAME="Microsoft Corporation" PRODUCT_NAME="Microsoft® Windows® Operating System" FILE_VERSION="5.1.2600.5755 (xpsp_sp3_gdr.090206-1234)" ORIGINAL_FILENAME="ntdll.dll" INTERNAL_NAME="ntdll.dll" LEGAL_COPYRIGHT="© Microsoft Corporation. All rights reserved." VERFILEDATEHI="0x0" VERFILEDATELO="0x0" VERFILEOS="0x40004" VERFILETYPE="0x2" MODULE_TYPE="WIN32" PE_CHECKSUM="0xBC674" LINKER_VERSION="0x50001" UPTO_BIN_FILE_VERSION="5.1.2600.5755" UPTO_BIN_PRODUCT_VERSION="5.1.2600.5755" LINK_DATE="02/09/2009 12:10:48" UPTO_LINK_DATE="02/09/2009 12:10:48" VER_LANGUAGE="English (United States) [0x409]" />
</EXE>
<EXE NAME="kernel32.dll" FILTER="GRABMI_FILTER_THISFILEONLY">
<MATCHING_FILE NAME="kernel32.dll" SIZE="989696" CHECKSUM="0x2D998938" BIN_FILE_VERSION="5.1.2600.5781" BIN_PRODUCT_VERSION="5.1.2600.5781" PRODUCT_VERSION="5.1.2600.5781" FILE_DESCRIPTION="Windows NT BASE API Client DLL" COMPANY_NAME="Microsoft Corporation" PRODUCT_NAME="Microsoft® Windows® Operating System" FILE_VERSION="5.1.2600.5781 (xpsp_sp3_gdr.090321-1317)" ORIGINAL_FILENAME="kernel32" INTERNAL_NAME="kernel32" LEGAL_COPYRIGHT="© Microsoft Corporation. All rights reserved." VERFILEDATEHI="0x0" VERFILEDATELO="0x0" VERFILEOS="0x40004" VERFILETYPE="0x2" MODULE_TYPE="WIN32" PE_CHECKSUM="0xFE572" LINKER_VERSION="0x50001" UPTO_BIN_FILE_VERSION="5.1.2600.5781" UPTO_BIN_PRODUCT_VERSION="5.1.2600.5781" LINK_DATE="03/21/2009 14:06:58" UPTO_LINK_DATE="03/21/2009 14:06:58" VER_LANGUAGE="English (United States) [0x409]" />
</EXE>
</DATABASE>
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jwleaf2

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Message 62416 - Posted: 24 Jul 2009, 17:46:09 UTC - in response to Message 62400.  

For several weeks this messages shows up a lot:

Restarting [name-of-task] using minirosetta version 182
Task [name-of-task] exited with zero status but no 'finished' file
If this happens repeatedly you may need to reset the project.

After about half an hour of this, Rosetta seems to move on to another task, but memory is not freed. The hanging processes can be deleted manually using Process Explorer. Resetting the project does not keep the problem from returning.

This problem happens on one of my Vista Home Premium systems, a laptop with an Intel Core2 Dual P7350 processor, but not on the other computer, a desktop with an Intel Core2 Quad Q8200 processor. The operating temperature of the problem laptop computer sometimes creeps up near the published CPU limit of 90degC. It is controlled by a fan blowing across the laptop and by restricting Rosetta CPU usage to 70%. Could hardware stress explain this problem?


The problem seems to have been fixed by uninstalling an old version of BOINC and reinstalling the current version. I was looking for differences between the computer that worked and the one that didn't.
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Rob Lilley

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Message 62418 - Posted: 25 Jul 2009, 0:01:02 UTC - in response to Message 62269.  
Last modified: 25 Jul 2009, 0:03:37 UTC

- Unhandled Exception Record -
Reason: Access Violation (0xc0000005) at address 0x006C1C6D read attempt to address 0x00000000

Happened on this WU after 2 hrs 50 min. This machine worked fine with Rosetta Mini v1.80.


Another access violation for this WU, and it's definitely not just me, as my wingman got the same error.
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svincent

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Message 62423 - Posted: 25 Jul 2009, 14:14:19 UTC

Another "SIGPIPE: write on a pipe with no reader" failure on Mac

267796917
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AMD_is_logical

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Message 62424 - Posted: 25 Jul 2009, 18:40:42 UTC

The WU looprebuild_t374_decoy_1_12863_2519 had a validate error for both crunchers after crunching a short amount of time and producing 99 decoys.
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Profile banditwolf

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Message 62434 - Posted: 26 Jul 2009, 3:36:19 UTC

Keep getting this for Mini rosetta 1.86.

7/25/2009 9:42:32 PM|rosetta@home|Started download of fragments_1e6i.zip
7/25/2009 9:42:49 PM||Project communication failed: attempting access to reference site
7/25/2009 9:42:49 PM|rosetta@home|Temporarily failed download of lr13_2hng.out.zip: system connect
7/25/2009 9:42:50 PM||Access to reference site succeeded - project servers may be temporarily down.
7/25/2009 9:42:50 PM|rosetta@home|Started download of lr13_2hng.out.zip
7/25/2009 9:42:52 PM||Project communication failed: attempting access to reference site
7/25/2009 9:42:52 PM|rosetta@home|Temporarily failed download of fragments_1e6i.zip: system connect
7/25/2009 9:42:53 PM||Access to reference site succeeded - project servers may be temporarily down.
7/25/2009 9:42:53 PM|rosetta@home|Started download of fragments_1e6i.zip


A 1.82 wu downloaded no problem.
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Dale Kirstein

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Message 62467 - Posted: 26 Jul 2009, 17:43:39 UTC

I just got several 1.86 WU with a length of --. Houston I think we have a problem.
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Profile robertmiles

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Message 62469 - Posted: 26 Jul 2009, 18:06:13 UTC

I'm currently unable to upload some of the output files for these three 1.82
workunits, which makes it difficult to get a view of whether those workunits completed without error.

Also, note the failure to download all of a 1.86 workunit.

I've editted out the messages related to workunits from other projects.

7/26/2009 11:55:32 AM rosetta@home Restarting task lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0 using minirosetta version 182
7/26/2009 11:55:42 AM rosetta@home Started upload of looprebuild_t374_nat_6_12863_3672_0_0
7/26/2009 11:55:42 AM rosetta@home Started upload of lr10_seq_score12_rlbd_2hsb_IGNORE_THE_REST_DECOY_13841_3855_0_0
7/26/2009 11:56:05 AM rosetta@home Temporarily failed upload of looprebuild_t374_nat_6_12863_3672_0_0: connect() failed
7/26/2009 11:56:05 AM rosetta@home Backing off 3 hr 4 min 52 sec on upload of looprebuild_t374_nat_6_12863_3672_0_0
7/26/2009 11:56:05 AM rosetta@home Temporarily failed upload of lr10_seq_score12_rlbd_2hsb_IGNORE_THE_REST_DECOY_13841_3855_0_0: connect() failed
7/26/2009 11:56:05 AM rosetta@home Backing off 12 min 15 sec on upload of lr10_seq_score12_rlbd_2hsb_IGNORE_THE_REST_DECOY_13841_3855_0_0
7/26/2009 11:56:05 AM rosetta@home Started upload of lr10_seq_score12_rlbd_2he4_IGNORE_THE_REST_DECOY_13841_3855_0_0
7/26/2009 11:56:05 AM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 11:56:05 AM rosetta@home Requesting new tasks
7/26/2009 11:56:27 AM Project communication failed: attempting access to reference site
7/26/2009 11:56:27 AM rosetta@home Temporarily failed upload of lr10_seq_score12_rlbd_2he4_IGNORE_THE_REST_DECOY_13841_3855_0_0: connect() failed
7/26/2009 11:56:27 AM rosetta@home Backing off 1 hr 20 min 9 sec on upload of lr10_seq_score12_rlbd_2he4_IGNORE_THE_REST_DECOY_13841_3855_0_0
7/26/2009 11:56:29 AM Internet access OK - project servers may be temporarily down.
7/26/2009 11:56:31 AM rosetta@home Scheduler request completed: got 0 new tasks
7/26/2009 12:06:07 PM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 12:06:07 PM rosetta@home Requesting new tasks
7/26/2009 12:06:32 PM rosetta@home Scheduler request completed: got 0 new tasks
7/26/2009 12:08:21 PM rosetta@home Started upload of lr10_seq_score12_rlbd_2hsb_IGNORE_THE_REST_DECOY_13841_3855_0_0
7/26/2009 12:08:43 PM Project communication failed: attempting access to reference site
7/26/2009 12:08:43 PM rosetta@home Temporarily failed upload of lr10_seq_score12_rlbd_2hsb_IGNORE_THE_REST_DECOY_13841_3855_0_0: connect() failed
7/26/2009 12:08:43 PM rosetta@home Backing off 2 hr 20 min 50 sec on upload of lr10_seq_score12_rlbd_2hsb_IGNORE_THE_REST_DECOY_13841_3855_0_0
7/26/2009 12:08:45 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:09:41 PM rosetta@home Computation for task lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0 finished
7/26/2009 12:09:43 PM rosetta@home Started upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0
7/26/2009 12:10:05 PM Project communication failed: attempting access to reference site
7/26/2009 12:10:05 PM rosetta@home Temporarily failed upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0: connect() failed
7/26/2009 12:10:05 PM rosetta@home Backing off 1 min 0 sec on upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0
7/26/2009 12:10:06 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:10:38 PM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 12:10:38 PM rosetta@home Requesting new tasks
7/26/2009 12:11:00 PM Project communication failed: attempting access to reference site
7/26/2009 12:11:02 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:11:03 PM rosetta@home Scheduler request failed: Couldn't connect to server
7/26/2009 12:11:05 PM rosetta@home Started upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0
7/26/2009 12:11:27 PM Project communication failed: attempting access to reference site
7/26/2009 12:11:27 PM rosetta@home Temporarily failed upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0: connect() failed
7/26/2009 12:11:27 PM rosetta@home Backing off 1 min 0 sec on upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0
7/26/2009 12:11:28 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:12:03 PM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 12:12:03 PM rosetta@home Requesting new tasks
7/26/2009 12:12:27 PM rosetta@home Started upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0
7/26/2009 12:12:49 PM Project communication failed: attempting access to reference site
7/26/2009 12:12:49 PM rosetta@home Temporarily failed upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0: connect() failed
7/26/2009 12:12:49 PM rosetta@home Backing off 1 min 0 sec on upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0
7/26/2009 12:12:50 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:12:53 PM rosetta@home Scheduler request completed: got 0 new tasks
7/26/2009 12:13:49 PM rosetta@home Started upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0
7/26/2009 12:14:11 PM Project communication failed: attempting access to reference site
7/26/2009 12:14:12 PM rosetta@home Temporarily failed upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0: connect() failed
7/26/2009 12:14:12 PM rosetta@home Backing off 1 min 0 sec on upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0
7/26/2009 12:14:13 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:15:12 PM rosetta@home Started upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0
7/26/2009 12:16:10 PM Project communication failed: attempting access to reference site
7/26/2009 12:16:10 PM rosetta@home Temporarily failed upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0: connect() failed
7/26/2009 12:16:10 PM rosetta@home Backing off 2 min 18 sec on upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0
7/26/2009 12:16:11 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:16:59 PM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 12:16:59 PM rosetta@home Requesting new tasks
7/26/2009 12:17:29 PM rosetta@home Scheduler request completed: got 0 new tasks
7/26/2009 12:18:28 PM rosetta@home Started upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0
7/26/2009 12:20:21 PM rosetta@home Finished upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0
7/26/2009 12:21:34 PM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 12:21:34 PM rosetta@home Reporting 1 completed tasks, requesting new tasks
7/26/2009 12:21:56 PM Project communication failed: attempting access to reference site
7/26/2009 12:21:57 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:21:59 PM rosetta@home Scheduler request failed: Couldn't connect to server
7/26/2009 12:22:59 PM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 12:22:59 PM rosetta@home Reporting 1 completed tasks, requesting new tasks
7/26/2009 12:23:21 PM Project communication failed: attempting access to reference site
7/26/2009 12:23:22 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:23:24 PM rosetta@home Scheduler request failed: Couldn't connect to server
7/26/2009 12:24:24 PM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 12:24:24 PM rosetta@home Reporting 1 completed tasks, requesting new tasks
7/26/2009 12:25:15 PM rosetta@home Scheduler request completed: got 1 new tasks
7/26/2009 12:25:17 PM rosetta@home Started download of minirosetta_1.86_windows_x86_64.exe
7/26/2009 12:25:17 PM rosetta@home Started download of minirosetta_database_rev31588.zip
7/26/2009 12:28:24 PM rosetta@home Temporarily failed download of minirosetta_1.86_windows_x86_64.exe: HTTP error
7/26/2009 12:28:24 PM rosetta@home Temporarily failed download of minirosetta_database_rev31588.zip: HTTP error
7/26/2009 12:28:24 PM rosetta@home Started download of relax_options_lr8_mmbend_yfsong
7/26/2009 12:28:24 PM rosetta@home Started download of score12_mmbend_yf.wts
7/26/2009 12:28:25 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:28:46 PM Project communication failed: attempting access to reference site
7/26/2009 12:28:46 PM rosetta@home Temporarily failed download of relax_options_lr8_mmbend_yfsong: connect() failed
7/26/2009 12:28:46 PM rosetta@home Temporarily failed download of score12_mmbend_yf.wts: connect() failed
7/26/2009 12:28:46 PM rosetta@home Started download of boinc_rb1_2ci2.pdb
7/26/2009 12:28:46 PM rosetta@home Started download of lr8_2ci2.out.zip
7/26/2009 12:28:47 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:29:39 PM rosetta@home Finished download of boinc_rb1_2ci2.pdb
7/26/2009 12:29:39 PM rosetta@home Started download of yfsong_lr8_mmbend.zip
7/26/2009 12:30:01 PM Project communication failed: attempting access to reference site
7/26/2009 12:30:01 PM rosetta@home Temporarily failed download of yfsong_lr8_mmbend.zip: connect() failed
7/26/2009 12:30:02 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:30:02 PM rosetta@home [error] File minirosetta_1.86_windows_x86_64.exe has wrong size: expected 9338880, got 0
7/26/2009 12:30:02 PM rosetta@home Started download of minirosetta_1.86_windows_x86_64.exe
7/26/2009 12:31:23 PM rosetta@home Finished download of minirosetta_1.86_windows_x86_64.exe
7/26/2009 12:31:23 PM rosetta@home [error] File minirosetta_database_rev31588.zip has wrong size: expected 29091359, got 0
7/26/2009 12:31:23 PM rosetta@home Started download of minirosetta_database_rev31588.zip
7/26/2009 12:33:05 PM rosetta@home Finished download of lr8_2ci2.out.zip
7/26/2009 12:33:05 PM rosetta@home [error] File yfsong_lr8_mmbend.zip has wrong size: expected 143, got 0
7/26/2009 12:33:05 PM rosetta@home Started download of yfsong_lr8_mmbend.zip
7/26/2009 12:33:06 PM rosetta@home Finished download of yfsong_lr8_mmbend.zip
7/26/2009 12:33:08 PM rosetta@home [error] File relax_options_lr8_mmbend_yfsong has wrong size: expected 90, got 0
7/26/2009 12:33:08 PM rosetta@home Started download of relax_options_lr8_mmbend_yfsong
7/26/2009 12:33:09 PM rosetta@home Finished download of relax_options_lr8_mmbend_yfsong
7/26/2009 12:33:09 PM rosetta@home [error] File score12_mmbend_yf.wts has wrong size: expected 413, got 0
7/26/2009 12:33:09 PM rosetta@home Started download of score12_mmbend_yf.wts
7/26/2009 12:33:10 PM rosetta@home Finished download of score12_mmbend_yf.wts
7/26/2009 12:35:42 PM rosetta@home Finished download of minirosetta_database_rev31588.zip
7/26/2009 12:35:42 PM rosetta@home [error] Signature verification error for minirosetta_database_rev31588.zip
7/26/2009 12:35:42 PM rosetta@home [error] Checksum or signature error for minirosetta_database_rev31588.zip
7/26/2009 12:39:04 PM rosetta@home update requested by user
7/26/2009 12:39:07 PM rosetta@home Sending scheduler request: Requested by user.
7/26/2009 12:39:07 PM rosetta@home Reporting 1 completed tasks, requesting new tasks
7/26/2009 12:39:29 PM Project communication failed: attempting access to reference site
7/26/2009 12:39:30 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:39:32 PM rosetta@home Scheduler request failed: Couldn't connect to server
7/26/2009 12:40:33 PM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 12:40:33 PM rosetta@home Reporting 1 completed tasks, requesting new tasks
7/26/2009 12:41:33 PM rosetta@home Scheduler request completed: got 0 new tasks
7/26/2009 12:45:40 PM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 12:45:40 PM rosetta@home Requesting new tasks
7/26/2009 12:46:02 PM Project communication failed: attempting access to reference site
7/26/2009 12:46:03 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:46:05 PM rosetta@home Scheduler request failed: Couldn't connect to server
7/26/2009 12:47:05 PM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 12:47:05 PM rosetta@home Requesting new tasks
7/26/2009 12:47:27 PM Project communication failed: attempting access to reference site
7/26/2009 12:47:28 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:47:30 PM rosetta@home Scheduler request failed: Couldn't connect to server
7/26/2009 12:48:31 PM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 12:48:31 PM rosetta@home Requesting new tasks
7/26/2009 12:49:21 PM rosetta@home Scheduler request completed: got 0 new tasks
7/26/2009 12:53:27 PM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 12:53:27 PM rosetta@home Requesting new tasks
7/26/2009 12:53:57 PM rosetta@home Scheduler request completed: got 0 new tasks
7/26/2009 12:58:08 PM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 12:58:08 PM rosetta@home Requesting new tasks
7/26/2009 12:58:49 PM rosetta@home Scheduler request completed: got 0 new tasks

I'm now out of Rosetta@home workunits that aren't waiting for uploads to complete, so I'll have the computer do workunits for other BOINC projects for a while.
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P . P . L .

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Message 62486 - Posted: 27 Jul 2009, 1:33:14 UTC

This one ran full term then errored.

https://boinc.bakerlab.org/rosetta/workunit.php?wuid=244612386

Mon 27 Jul 2009 11:12:34 EST|rosetta@home|Output file lr10_seq_score12_rlbd_2fls_IGNORE_THE_REST_DECOY_13841_2876_0_0 for task absent

<core_client_version>6.2.14</core_client_version>
<![CDATA[
<message>
process exited with code 193 (0xc1, -63)
</message>


SIGSEGV: segmentation violation
Stack trace (15 frames):
[0x94fa937]
[0x9525044]
[0xffffe500]
[0x8cf2b66]
[0x8cf2f30]
[0x8a6064a]
[0x8a61503]
[0x8b66be0]
[0x8bba7e2]
[0x815f88b]
[0x81ad01c]
[0x8168071]
[0x804a75c]
[0x9582a0c]
[0x8048111]

Exiting...

</stderr_txt>
]]>

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Wissi

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Message 62508 - Posted: 27 Jul 2009, 15:53:26 UTC - in response to Message 62469.  
Last modified: 27 Jul 2009, 15:55:00 UTC

...
Also, note the failure to download all of a 1.86 workunit.
...


Yeah, the same for me here. Hours and hours of Problem uploading the results of a finished task, then downloads for a new minirotetta 1.86 started, but either the expected database file was 0 bytes, or there was a signature error.

By the way, there was no note on the homepage, that minirosetta had been updated to Rev. 1.86. I just hope that the site wasn't hacked...

And today, I got not one new task, neither in the office nor at home. Strange... rosetta seems to be on vacancy :-)
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Message 62536 - Posted: 28 Jul 2009, 2:25:35 UTC

I've just noticed that none of my systems are getting new work units. A few have just run out of work units. I reinstalled the current boinc on one system and tried again, and the servers would still not supply any new work units. I'm happy (not really) to read that this appears to be happening to others, not just me.

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njmaugbill

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Message 62537 - Posted: 28 Jul 2009, 2:49:04 UTC - in response to Message 62536.  

I've just noticed that none of my systems are getting new work units. A few have just run out of work units. I reinstalled the current boinc on one system and tried again, and the servers would still not supply any new work units. I'm happy (not really) to read that this appears to be happening to others, not just me.


It's happening here too. I've received nothing since Saturday. Tonight I received 8 and that was it.

Bill
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Profile alpha

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Message 62561 - Posted: 28 Jul 2009, 16:53:12 UTC

Compute error:

https://boinc.bakerlab.org/rosetta/result.php?resultid=268080857

The relevant BOINC output was:

27-Jul-2009 08:02:53 [---] Preferences limit disk usage to 0.58GB
27-Jul-2009 08:08:54 [rosetta@home] Aborting task lr8_seq_score12_ss5.0_rlbd_1unr_IGNORE_THE_REST_DECOY_14281_3781_0: exceeded disk limit: 343.49MB > 286.10MB
27-Jul-2009 08:08:55 [rosetta@home] Computation for task lr8_seq_score12_ss5.0_rlbd_1unr_IGNORE_THE_REST_DECOY_14281_3781_0 finished
27-Jul-2009 08:08:55 [rosetta@home] Output file lr8_seq_score12_ss5.0_rlbd_1unr_IGNORE_THE_REST_DECOY_14281_3781_0_0 for task lr8_seq_score12_ss5.0_rlbd_1unr_IGNORE_THE_REST_DECOY_14281_3781_0 absent

I'm not sure how the disk limit was exceeded here, 286.10MB != 0.58GB.
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Message 62569 - Posted: 28 Jul 2009, 21:29:06 UTC

alpha, the .58GB is your overall BOINC preference. Which is then possibly divided across several projects. But the actual failure message is specific to the task. The tasks have a failsafe which kicks in if abnormally large amounts of output are being produced. This appears to be what caused the task to end... odd then that it would say the file was absent. Such mannar of odd things are why your reports in these threads are useful. Thank you.
Rosetta Moderator: Mod.Sense
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Profile Greg_BE
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Message 62591 - Posted: 29 Jul 2009, 9:23:35 UTC
Last modified: 29 Jul 2009, 9:25:30 UTC

lr8_seq_score12_ss5.0_rlbd_1wou_IGNORE_THE_REST_DECOY_14281_2399_0
lr8_seq_score12_ss5.0_rlbd_1wou_IGNORE_THE_REST_DECOY_14281_2399_0
lr8_seq_score12_ss5.0_rlbd_1wou_IGNORE_THE_REST_DECOY_14281_3248_0
lr10_seq_score12_rlbd_2fls_IGNORE_THE_REST_DECOY_13841_693_0

All came up with:
Outcome Client error
Client State Compute error
Exit status -1073741819 (0xc0000005)
Al of them crashed with unhandeled exception error in full atom mode
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Message 62602 - Posted: 29 Jul 2009, 20:05:29 UTC
Last modified: 29 Jul 2009, 20:47:15 UTC

My first minirosetta 1.88 WU ended with an: incorrect function:

lr8_B_seq_score12_ss5.0_rlbd_2uzr_IGNORE_THE_REST_DECOY_14598_374_0

ERROR: Option matching -detect_disulf not found in command line top-level context

Edit: The same error on the second run.
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Message boards : Number crunching : Minirosetta 1.82/1.88



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