Problems with Rosetta version 5.59

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Message 39486 - Posted: 16 Apr 2007, 5:32:47 UTC - in response to Message 39479.  

i got a lot of errors,,,,,,whats up


You need more than 128MB of memory to run Rosetta these days.

ok thanks
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ramostol

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Message 39506 - Posted: 16 Apr 2007, 16:24:08 UTC - in response to Message 39437.  


I am not sure if this is supposed to be some kind of a workaround, however as I said - I run boinc on an unattended computer (a Linux router to be precise, all it has to do is routing packets, draw interface traffic graphs, pop some SNMP stats etc.). Any workarounds which require human intervention are unacceptable here.


It was not intended to be a workaround, merely an observation. Which I hope may assist the project developers in finding the origins of errors like these.

-- R. A. Mostol
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rechenknecht123

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Message 39568 - Posted: 18 Apr 2007, 12:07:33 UTC
Last modified: 18 Apr 2007, 12:09:41 UTC

Mi 18 Apr 13:55:15 2007||Host location: none
Mi 18 Apr 13:55:15 2007||General prefs: using your defaults
Mi 18 Apr 13:55:15 2007|rosetta@home|Task s029__BOINC_SYMM_FOLD_AND_DOCK_RELAX-s029_-truncate_hom001__1638_96906_0 is 0.66 days overdue.
Mi 18 Apr 13:55:15 2007|rosetta@home|You may not get credit for it. Consider aborting it.
Mi 18 Apr 13:55:15 2007||Running CPU benchmarks
Mi 18 Apr 14:00:18 2007||[error] CPU benchmarks timed out, using default values
Mi 18 Apr 14:00:21 2007||[error] Process 540 not found
Mi 18 Apr 14:00:21 2007|rosetta@home|Restarting task s029__BOINC_SYMM_FOLD_AND_DOCK_RELAX-s029_-truncate_hom001__1638_96906_0 using rosetta version 559
Mi 18 Apr 14:00:21 2007||Running CPU benchmarks
Mi 18 Apr 14:00:21 2007||Suspending computation - running CPU benchmarks
Mi 18 Apr 14:01:26 2007||Benchmark results:
Mi 18 Apr 14:01:26 2007|| Number of CPUs: 1
Mi 18 Apr 14:01:26 2007|| 267 floating point MIPS (Whetstone) per CPU
Mi 18 Apr 14:01:26 2007|| 603 integer MIPS (Dhrystone) per CPU
Mi 18 Apr 14:01:29 2007||Resuming computation
Mi 18 Apr 14:01:56 2007|rosetta@home|Computation for task s029__BOINC_SYMM_FOLD_AND_DOCK_RELAX-s029_-truncate_hom001__1638_96906_0 finished
Mi 18 Apr 14:01:56 2007|rosetta@home|Output file s029__BOINC_SYMM_FOLD_AND_DOCK_RELAX-s029_-truncate_hom001__1638_96906_0_0 for task s029__BOINC_SYMM_FOLD_AND_DOCK_RELAX-s029_-truncate_hom001__1638_96906_0 absent
Mi 18 Apr 14:02:00 2007|rosetta@home|Deferring communication for 1 min 0 sec
Mi 18 Apr 14:02:00 2007|rosetta@home|Reason: Unrecoverable error for result s029__BOINC_SYMM_FOLD_AND_DOCK_RELAX-s029_-truncate_hom001__1638_96906_0 (<file_xfer_error> <file_name>s029__BOINC_SYMM_FOLD_AND_DOCK_RELAX-s029_-truncate_hom001__1638_96906_0_0</file_name> <error_code>-161</error_code></file_xfer_error>)

abort crunch


what happend ?

powerbook g4 400 ppc 7410/ mac os x 10.39- bonic man 5.8.17.

greets rechenknecht

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Message 39579 - Posted: 18 Apr 2007, 21:52:58 UTC

Looks like rechenknecht123's task in question is this one.

It looks like the task was restarted 5 times without reaching a checkpoint and so it was ended. This is part of Rosetta watching out for you. They figure if you've begun the same task 5 times without making any progress, then the task is not well suited for your machine and so it ends it and reports it in. Looks like you never completed the first model and so no output file was produced.

So the question becomes, what would cause me to restart a task many times without making progress. Any time a task is removed from memory, it must restart. So, if you do not keep tasks in memory while preempted, then any preemption will cause a restart. Preemption could be from other BOINC tasks taking their share of CPU time, or if you configure BOINC (see General Preferences) to not run while computer is in use, and to not remain in memory while preempted, then each time someone sits down to the computer, the task is removed from memory and must be restarted. This is why the message in the results page suggests "Keep application in memory while preempted."

Also, any time the computer is powered off, or BOINC is exited (not just closed, but exited), the task must restart.

Once a model is completed, that progress is saved, and would be reflected in your CPU time reported. There may also be checkpoints within a model for some tasks. In short, your machine began the task, and ended it again before allowing it to run long enough to reach the end of a model, or reach a checkpoint.

Rhiju: any idea why the task shows it built 30 nstructs in those 3 seconds?
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Stevea

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Message 39592 - Posted: 19 Apr 2007, 4:21:44 UTC
Last modified: 19 Apr 2007, 5:15:54 UTC

Something wrong in credit land...I have un hidden my comps for all to see. This comes out at around 1 credit per hr...

Result ID 73586745
Name SEARCH_PAIRINGS_-1dhn_-_filters_1646_35719_0
Workunit 65972606
Created 17 Apr 2007 17:53:07 UTC
Sent 17 Apr 2007 17:58:44 UTC
Received 19 Apr 2007 4:06:17 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x0)
Computer ID 410071
Report deadline 27 Apr 2007 17:58:44 UTC
CPU time 21833.21875
stderr out

<core_client_version>5.8.8</core_client_version>
<![CDATA[
<stderr_txt>
# cpu_run_time_pref: 14400
# random seed: 2708622
======================================================
DONE :: 1 starting structures built 30 (nstruct) times
This process generated 2 decoys from 2 attempts
======================================================


BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...

</stderr_txt>
]]>

Validate state Valid
Claimed credit 93.0845086817385
Granted credit 8.09930888889199
application version 5.59


Come on... I'll pull all my machines off this project, if I get another one of these 8 credit results...not only that it ran for twice as long as it was supposed to?

This is not going to even out over the long haul..Its going to take a long time for my RAC to recuperate from this.

This is on a dual core Operton 170 running at 2825mhz and is a dedicated cruncher, it does nothing else.
BETA = Bahhh

Way too many errors, killing both the credit & RAC.

And I still think the (New and Improved) credit system is not ready for prime time...
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P . P . L .

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Message 39593 - Posted: 19 Apr 2007, 4:30:13 UTC
Last modified: 19 Apr 2007, 4:32:42 UTC

I've had another finish early, same type of unit: SEARCH_PAIRINGS.

Is there a problem with them.

Edit> Over Success Done 16,994.00

https://boinc.bakerlab.org/rosetta/workunit.php?wuid=65821778

core_client_version>5.8.16</core_client_version>
<![CDATA[
<stderr_txt>
# cpu_run_time_pref: 36000
# random seed: 2710824
# cpu_run_time_pref: 36000
======================================================
DONE :: 1 starting structures built 67 (nstruct) times
This process generated 32 decoys from 32 attempts
======================================================


BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down


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Message 39595 - Posted: 19 Apr 2007, 5:07:48 UTC

My brother had something quite similar some days ago with
SEARCH_PAIRINGS_-1dhn_-_filters_1646_7451_0 :
https://boinc.bakerlab.org/rosetta/result.php?resultid=72741527

it exeeded the CPU target time by 6000 sec, and gave very low credits aswell

Claimed credit 62.1635748137754
Granted credit 27.7968929798984
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Stevea

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Message 39628 - Posted: 19 Apr 2007, 23:39:10 UTC

No one is going to look into this are they?

Validate state Valid
Claimed credit 93.0845086817385
Granted credit 8.09930888889199
application version 5.59

This one of those OH Well Too Bad..

I though the new and improved credit system was supposed to give credit for work done.

Can someone please explain to me how a Operton with 1meg cache work on a wu for over 6hrs and get awarded 8 credits?

BETA = Bahhh

Way too many errors, killing both the credit & RAC.

And I still think the (New and Improved) credit system is not ready for prime time...
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Message 39631 - Posted: 20 Apr 2007, 0:17:57 UTC - in response to Message 39628.  
Last modified: 20 Apr 2007, 0:18:21 UTC

No one is going to look into this are they?

Validate state Valid
Claimed credit 93.0845086817385
Granted credit 8.09930888889199
application version 5.59

This one of those OH Well Too Bad..

I though the new and improved credit system was supposed to give credit for work done.

Can someone please explain to me how a Operton with 1meg cache work on a wu for over 6hrs and get awarded 8 credits?


The way I understand it, you get the average of everyone running the same group of WUs (SEARCH_PAIRINGS_-1dhn-blah-blah-blah....). It certainly isn't fair when a statistically abnormal WU comes along in the group, as you found out. I doubt you'll ever get enough significantly shorter-than-normal WUs to ever make it up.

I think this falls into the "Sorry, Charlie" category.


Nemesis n. A righteous infliction of retribution manifested by an appropriate agent.


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Message 39637 - Posted: 20 Apr 2007, 6:40:35 UTC

I have had two of those with very low credit, both ran way past the target run time. Looks like I have a 3rd running now, it has a target run time of 4 hours. It was up to ~97% at 3:56 when the percent complete dropped to 50%. Looks like it will run for 8 hours, and from the others that did this I will not get any cedit for the last 4 hours.

Looking at differant computers and the post in this thread I see that several others have this happening also. It never happened to me prior to 5.59, is it time to go back to 4.54 till this can be fixed?


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Message 39647 - Posted: 20 Apr 2007, 14:01:58 UTC - in response to Message 39637.  

I have had two of those with very low credit, both ran way past the target run time. Looks like I have a 3rd running now, it has a target run time of 4 hours. It was up to ~97% at 3:56 when the percent complete dropped to 50%. Looks like it will run for 8 hours, and from the others that did this I will not get any cedit for the last 4 hours.

Looking at differant computers and the post in this thread I see that several others have this happening also. It never happened to me prior to 5.59, is it time to go back to 4.54 till this can be fixed?

This unit supprised me and did not run the extra time like the other two I had that did this.
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rechenknecht123

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Message 39656 - Posted: 20 Apr 2007, 15:31:17 UTC - in response to Message 39579.  
Last modified: 20 Apr 2007, 15:32:36 UTC

Looks like rechenknecht123's task in question is this one.

It looks like the task was restarted 5 times without reaching a checkpoint and so it was ended. This is part of Rosetta watching out for you. They figure if you've begun the same task 5 times without making any progress, then the task is not well suited for your machine and so it ends it and reports it in. Looks like you never completed the first model and so no output file was produced.

So the question becomes, what would cause me to restart a task many times without making progress. Any time a task is removed from memory, it must restart. So, if you do not keep tasks in memory while preempted, then any preemption will cause a restart. Preemption could be from other BOINC tasks taking their share of CPU time, or if you configure BOINC (see General Preferences) to not run while computer is in use, and to not remain in memory while preempted, then each time someone sits down to the computer, the task is removed from memory and must be restarted. This is why the message in the results page suggests "Keep application in memory while preempted."

Also, any time the computer is powered off, or BOINC is exited (not just closed, but exited), the task must restart.

Once a model is completed, that progress is saved, and would be reflected in your CPU time reported. There may also be checkpoints within a model for some tasks. In short, your machine began the task, and ended it again before allowing it to run long enough to reach the end of a model, or reach a checkpoint.

Rhiju: any idea why the task shows it built 30 nstructs in those 3 seconds?


hi Rhiju
in my opinion "problem boinc-5.8.17 the recalc`s of rosetta."
tonight a had made the security patch 4-2007 for mac osx 10.49.
shit happend and i had made a hart reset with power off.
after this the patch runs again with rejuornaling the 8 harddrives. no problems with rosetta 599.
runs fine at 0:34:05h and 34% ready cal. est time 00:02h:34sec.
at this WU

Fr 20 Apr 10:57:28 2007||Starting BOINC client version 5.8.15 for powerpc-apple-darwin
Fr 20 Apr 10:57:28 2007||log flags: task, file_xfer, sched_ops
Fr 20 Apr 10:57:28 2007||Libraries: libcurl/7.15.5 OpenSSL/0.9.7l zlib/1.2.3
Fr 20 Apr 10:57:28 2007||Data directory: /Library/Application Support/BOINC Data
Fr 20 Apr 10:57:29 2007||Processor: 1 Power Macintosh Power Macintosh [Power Macintosh Model PowerBook3,2] [AltiVec]
Fr 20 Apr 10:57:29 2007||Memory: 768.00 MB physical, 501.27 MB virtual
Fr 20 Apr 10:57:29 2007||Disk: 56.12 GB total, 251.27 MB free
Fr 20 Apr 10:57:30 2007|rosetta@home|URL: https://boinc.bakerlab.org/rosetta/; Computer ID: 337257; location: (none); project prefs: default
Fr 20 Apr 10:57:30 2007|boincsimap|URL: http://boinc.bio.wzw.tum.de/boincsimap/; Computer ID: 39400; location: (none); project prefs: default
Fr 20 Apr 10:57:30 2007|SETI@home|URL: http://setiathome.berkeley.edu/; Computer ID: 3113647; location: home; project prefs: default
Fr 20 Apr 10:57:30 2007||General prefs: from rosetta@home (last modified 2007-04-09 12:16:42)
Fr 20 Apr 10:57:30 2007||Host location: none
Fr 20 Apr 10:57:30 2007||General prefs: using your defaults
Fr 20 Apr 10:57:32 2007|rosetta@home|Restarting task CNTRL_ABRELAX_SAVE_ALL_OUT_-2chf_-_filters_1615_96931_0 using rosetta version 559
Fr 20 Apr 13:40:30 2007||Suspending computation - user request
Fr 20 Apr 14:21:54 2007||Resuming computation

best wishes
rechenknecht 123




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Message 39695 - Posted: 21 Apr 2007, 13:13:32 UTC
Last modified: 21 Apr 2007, 13:15:39 UTC

I have a task, which needs lots of time more than the target CPU run time of 2 hours. It took 4,5 hours to reach 95%! The speed fell down after reaching 80% after 1,6 hours. Here is the task: https://boinc.bakerlab.org/rosetta/result.php?resultid=73391607
The same was with this task, which I aborted after 6 hours at 94%(task restarted after restarting the computer):
https://boinc.bakerlab.org/rosetta/result.php?resultid=73391538

Do you know what caused this and how it can be solved?

P.S.:Sorry for probably bad english!
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Sierra2606

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Message 39696 - Posted: 21 Apr 2007, 13:26:39 UTC - in response to Message 39695.  
Last modified: 21 Apr 2007, 13:28:14 UTC

The task finished now after 4:50 hours, but I got only a very low credit.
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Stevea

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Message 39701 - Posted: 21 Apr 2007, 15:49:02 UTC
Last modified: 21 Apr 2007, 16:13:58 UTC

Another problem series?

From 3 different machines!
I even pulled a single core mobile xp machine yesterday and replaced it with another dual core operton, and my rac continues to fall?

Half also ran longer than they were supposed to.

This is not funny any more......

Result ID 74101016
Name 2K3E_HEXAMER_CHAPERONE_DOCKING_1682_27127_0
Workunit 66457982
Created 20 Apr 2007 11:05:32 UTC
Sent 20 Apr 2007 11:16:57 UTC
Received 21 Apr 2007 15:42:26 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x0)
Computer ID 411074
Report deadline 30 Apr 2007 11:16:57 UTC
CPU time 25171.453125
stderr out

<core_client_version>5.8.8</core_client_version>
<![CDATA[
<stderr_txt>
# cpu_run_time_pref: 21600
# random seed: 1655494
**********************************************************************
Rosetta score is stuck or going too long. Watchdog is ending the run!
Stuck at score -491.601 for 900 seconds
**********************************************************************
GZIP SILENT FILE: .aa2K3E.out

</stderr_txt>
]]>

Validate state Valid
Claimed credit 80.8845111635969
Granted credit 20
application version 5.59

And more

Result ID 74050154
Name 2K3E_HEXAMER_CHAPERONE_DOCKING_1682_20372_0
Workunit 66410697
Created 20 Apr 2007 4:31:00 UTC
Sent 20 Apr 2007 4:31:41 UTC
Received 21 Apr 2007 7:48:07 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x0)
Computer ID 410071
Report deadline 30 Apr 2007 4:31:41 UTC
CPU time 7202.125
stderr out

<core_client_version>5.8.8</core_client_version>
<![CDATA[
<stderr_txt>
# cpu_run_time_pref: 14400
# random seed: 1662249
**********************************************************************
Rosetta score is stuck or going too long. Watchdog is ending the run!
Stuck at score -491.094 for 900 seconds
**********************************************************************
GZIP SILENT FILE: .aa2K3E.out

</stderr_txt>
]]>

Validate state Valid
Claimed credit 30.7057917005236
Granted credit 20
application version 5.59

Result ID 74057237
Name 2K3E_HEXAMER_CHAPERONE_DOCKING_1682_21330_0
Workunit 66417403
Created 20 Apr 2007 5:30:08 UTC
Sent 20 Apr 2007 5:42:32 UTC
Received 21 Apr 2007 8:19:17 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x0)
Computer ID 410071
Report deadline 30 Apr 2007 5:42:32 UTC
CPU time 10784.53125
stderr out

<core_client_version>5.8.8</core_client_version>
<![CDATA[
<stderr_txt>
# cpu_run_time_pref: 14400
# random seed: 1661291
**********************************************************************
Rosetta score is stuck or going too long. Watchdog is ending the run!
Stuck at score -197.897 for 900 seconds
**********************************************************************
GZIP SILENT FILE: .aa2K3E.out

</stderr_txt>
]]>

Validate state Valid
Claimed credit 45.9791478418227
Granted credit 20
application version 5.59

Result ID 74015760
Name 2K3E_HEXAMER_CHAPERONE_DOCKING_1682_15702_0
Workunit 66378007
Created 19 Apr 2007 23:45:27 UTC
Sent 19 Apr 2007 23:46:56 UTC
Received 21 Apr 2007 2:01:05 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x0)
Computer ID 438532
Report deadline 29 Apr 2007 23:46:56 UTC
CPU time 17990.421875
stderr out

<core_client_version>5.8.15</core_client_version>
<![CDATA[
<stderr_txt>
# cpu_run_time_pref: 14400
# random seed: 1666919
**********************************************************************
Rosetta score is stuck or going too long. Watchdog is ending the run!
Stuck at score -487.342 for 900 seconds
**********************************************************************
GZIP SILENT FILE: .aa2K3E.out

</stderr_txt>
]]>

Validate state Valid
Claimed credit 80.0340997052485
Granted credit 20
application version 5.59
BETA = Bahhh

Way too many errors, killing both the credit & RAC.

And I still think the (New and Improved) credit system is not ready for prime time...
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Message 39722 - Posted: 22 Apr 2007, 11:43:25 UTC
Last modified: 22 Apr 2007, 11:46:58 UTC

i have this same wu unit 2K3E_HEXAMER_CHAPERONE_DOCKING_1682_25103 now and when i opened the graphics window (no, not screensaver) i see the wu stuck on model 5 step 521. The percent is still climbing but there is no graphics activity, no new values in rmsd or accepted energy.
I'll let it run until watchdog shuts it off or it completes but this is weird activity. Been looking at it now for 5 minutes and no change in values.
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Message 39725 - Posted: 22 Apr 2007, 12:48:40 UTC

i got the same result after 2 hrs work
see here for the error message
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Message 39726 - Posted: 22 Apr 2007, 15:05:17 UTC - in response to Message 39725.  

I've tried to attach to rosetta, but get nothing but Checksum Errors.
Ubuntu 6.10 with latest updates, Boinc 5.8.17 (The latest). I've got 5 other projects that work perfectly.

Copy of output:
-------------------------------------------------------------------------------
søn 22 apr 2007 16:32:08 CEST|https://boinc.bakerlab.org/rosetta/|Master file download succeeded
søn 22 apr 2007 16:32:08 CEST|https://boinc.bakerlab.org/rosetta/|Sending scheduler request: Project initialization
søn 22 apr 2007 16:32:08 CEST|https://boinc.bakerlab.org/rosetta/|Requesting 1 seconds of new work
søn 22 apr 2007 16:32:11 CEST|rosetta@home|Scheduler RPC succeeded [server version 509]
søn 22 apr 2007 16:32:11 CEST|rosetta@home|New host venue: home
søn 22 apr 2007 16:32:11 CEST|rosetta@home|Deferring communication for 4 min 2 sec
søn 22 apr 2007 16:32:11 CEST|rosetta@home|Reason: requested by project
søn 22 apr 2007 16:32:11 CEST|rosetta@home|Successfully attached to rosetta@home
søn 22 apr 2007 16:32:14 CEST|rosetta@home|[file_xfer] Started download of file rosetta_5.59_i686-pc-linux-gnu
søn 22 apr 2007 16:32:14 CEST|rosetta@home|[file_xfer] Started download of file avgE_from_pdb.gz
søn 22 apr 2007 16:32:15 CEST|rosetta@home|Incomplete read of 2749.000000 < 5KB for avgE_from_pdb.gz - truncating
søn 22 apr 2007 16:32:15 CEST|rosetta@home|[file_xfer] Finished download of file avgE_from_pdb.gz
søn 22 apr 2007 16:32:15 CEST|rosetta@home|[file_xfer] Throughput 6692 bytes/sec
søn 22 apr 2007 16:32:15 CEST|rosetta@home|[file_xfer] Started download of file bbdep02.May.sortlib.gz
søn 22 apr 2007 16:32:15 CEST|rosetta@home|[error] Checksum or signature error for avgE_from_pdb.gz
søn 22 apr 2007 16:32:17 CEST|rosetta@home|Incomplete read of 2761.000000 < 5KB for bbdep02.May.sortlib.gz - truncating
søn 22 apr 2007 16:32:17 CEST|rosetta@home|[file_xfer] Finished download of file bbdep02.May.sortlib.gz
søn 22 apr 2007 16:32:17 CEST|rosetta@home|[file_xfer] Throughput 6877 bytes/sec
søn 22 apr 2007 16:32:17 CEST|rosetta@home|[file_xfer] Started download of file bb_hbW.gz
søn 22 apr 2007 16:32:17 CEST|rosetta@home|[error] Checksum or signature error for bbdep02.May.sortlib.gz
søn 22 apr 2007 16:32:18 CEST|rosetta@home|Incomplete read of 2735.000000 < 5KB for bb_hbW.gz - truncating
søn 22 apr 2007 16:32:18 CEST|rosetta@home|[file_xfer] Finished download of file bb_hbW.gz
søn 22 apr 2007 16:32:18 CEST|rosetta@home|[file_xfer] Throughput 7075 bytes/sec
søn 22 apr 2007 16:32:18 CEST|rosetta@home|[file_xfer] Started download of file disulf_jumps.dat.gz
søn 22 apr 2007 16:32:18 CEST|rosetta@home|[error] Checksum or signature error for bb_hbW.gz
søn 22 apr 2007 16:32:19 CEST|rosetta@home|Incomplete read of 2755.000000 < 5KB for disulf_jumps.dat.gz - truncating
søn 22 apr 2007 16:32:19 CEST|rosetta@home|[file_xfer] Finished download of file disulf_jumps.dat.gz
søn 22 apr 2007 16:32:19 CEST|rosetta@home|[file_xfer] Throughput 7105 bytes/sec
søn 22 apr 2007 16:32:19 CEST|rosetta@home|[file_xfer] Started download of file DunbrackBBDepRots12.dat.gz
søn 22 apr 2007 16:32:19 CEST|rosetta@home|[error] Checksum or signature error for disulf_jumps.dat.gz
søn 22 apr 2007 16:32:20 CEST|rosetta@home|Incomplete read of 2769.000000 < 5KB for DunbrackBBDepRots12.dat.gz - truncating
søn 22 apr 2007 16:32:20 CEST|rosetta@home|[file_xfer] Finished download of file DunbrackBBDepRots12.dat.gz
søn 22 apr 2007 16:32:20 CEST|rosetta@home|[file_xfer] Throughput 6932 bytes/sec
søn 22 apr 2007 16:32:20 CEST|rosetta@home|[file_xfer] Started download of file Equil_AM.mean.dat.gz
søn 22 apr 2007 16:32:20 CEST|rosetta@home|[error] Checksum or signature error for DunbrackBBDepRots12.dat.gz
søn 22 apr 2007 16:32:22 CEST|rosetta@home|Incomplete read of 2753.000000 < 5KB for Equil_AM.mean.dat.gz - truncating
søn 22 apr 2007 16:32:22 CEST|rosetta@home|[file_xfer] Finished download of file Equil_AM.mean.dat.gz
søn 22 apr 2007 16:32:22 CEST|rosetta@home|[file_xfer] Throughput 7160 bytes/sec
søn 22 apr 2007 16:32:22 CEST|rosetta@home|[file_xfer] Started download of file Equil_AM.stddev.dat.gz
søn 22 apr 2007 16:32:22 CEST|rosetta@home|[error] Checksum or signature error for Equil_AM.mean.dat.gz
søn 22 apr 2007 16:32:23 CEST|rosetta@home|Incomplete read of 2759.000000 < 5KB for Equil_AM.stddev.dat.gz - truncating
søn 22 apr 2007 16:32:23 CEST|rosetta@home|[file_xfer] Finished download of file Equil_AM.stddev.dat.gz
søn 22 apr 2007 16:32:23 CEST|rosetta@home|[file_xfer] Throughput 6984 bytes/sec
søn 22 apr 2007 16:32:23 CEST|rosetta@home|[file_xfer] Started download of file Equil_bp_AM.mean.dat.gz
søn 22 apr 2007 16:32:23 CEST|rosetta@home|[error] Checksum or signature error for Equil_AM.stddev.dat.gz
søn 22 apr 2007 16:32:25 CEST|rosetta@home|Incomplete read of 2763.000000 < 5KB for Equil_bp_AM.mean.dat.gz - truncating
søn 22 apr 2007 16:32:25 CEST|rosetta@home|[file_xfer] Finished download of file Equil_bp_AM.mean.dat.gz
søn 22 apr 2007 16:32:25 CEST|rosetta@home|[file_xfer] Throughput 7026 bytes/sec
søn 22 apr 2007 16:32:25 CEST|rosetta@home|[file_xfer] Started download of file Equil_bp_AM.stddev.dat.gz
søn 22 apr 2007 16:32:25 CEST|rosetta@home|[error] Checksum or signature error for Equil_bp_AM.mean.dat.gz
søn 22 apr 2007 16:32:26 CEST|rosetta@home|Incomplete read of 2767.000000 < 5KB for Equil_bp_AM.stddev.dat.gz - truncating
søn 22 apr 2007 16:32:26 CEST|rosetta@home|[file_xfer] Finished download of file Equil_bp_AM.stddev.dat.gz
søn 22 apr 2007 16:32:26 CEST|rosetta@home|[file_xfer] Throughput 6544 bytes/sec
søn 22 apr 2007 16:32:26 CEST|rosetta@home|[file_xfer] Started download of file Fij_AM.dat.gz
søn 22 apr 2007 16:32:26 CEST|rosetta@home|[error] Checksum or signature error for Equil_bp_AM.stddev.dat.gz
søn 22 apr 2007 16:32:27 CEST|rosetta@home|Incomplete read of 2743.000000 < 5KB for Fij_AM.dat.gz - truncating
søn 22 apr 2007 16:32:27 CEST|rosetta@home|[file_xfer] Finished download of file Fij_AM.dat.gz
søn 22 apr 2007 16:32:27 CEST|rosetta@home|[file_xfer] Throughput 6951 bytes/sec
søn 22 apr 2007 16:32:27 CEST|rosetta@home|[file_xfer] Started download of file Fij_bp_AM.dat.gz
søn 22 apr 2007 16:32:27 CEST|rosetta@home|[error] Checksum or signature error for Fij_AM.dat.gz
søn 22 apr 2007 16:32:29 CEST|rosetta@home|Incomplete read of 2749.000000 < 5KB for Fij_bp_AM.dat.gz - truncating
søn 22 apr 2007 16:32:29 CEST|rosetta@home|[file_xfer] Finished download of file Fij_bp_AM.dat.gz
søn 22 apr 2007 16:32:29 CEST|rosetta@home|[file_xfer] Throughput 6736 bytes/sec
søn 22 apr 2007 16:32:29 CEST|rosetta@home|[file_xfer] Started download of file jump_templates.dat.gz
søn 22 apr 2007 16:32:29 CEST|rosetta@home|[error] Checksum or signature error for Fij_bp_AM.dat.gz
søn 22 apr 2007 16:32:30 CEST|rosetta@home|Incomplete read of 2759.000000 < 5KB for jump_templates.dat.gz - truncating
søn 22 apr 2007 16:32:30 CEST|rosetta@home|[file_xfer] Finished download of file jump_templates.dat.gz
søn 22 apr 2007 16:32:30 CEST|rosetta@home|[file_xfer] Throughput 7059 bytes/sec
søn 22 apr 2007 16:32:30 CEST|rosetta@home|[file_xfer] Started download of file jump_templates_v2.dat.gz
søn 22 apr 2007 16:32:30 CEST|rosetta@home|[error] Checksum or signature error for jump_templates.dat.gz
søn 22 apr 2007 16:32:31 CEST|rosetta@home|Incomplete read of 2765.000000 < 5KB for jump_templates_v2.dat.gz - truncating
søn 22 apr 2007 16:32:31 CEST|rosetta@home|[file_xfer] Finished download of file jump_templates_v2.dat.gz
søn 22 apr 2007 16:32:31 CEST|rosetta@home|[file_xfer] Throughput 6660 bytes/sec
søn 22 apr 2007 16:32:31 CEST|rosetta@home|[file_xfer] Started download of file jump_templates_RNA_basepairs.dat.gz
søn 22 apr 2007 16:32:31 CEST|rosetta@home|[error] Checksum or signature error for jump_templates_v2.dat.gz
søn 22 apr 2007 16:32:33 CEST|rosetta@home|Incomplete read of 2787.000000 < 5KB for jump_templates_RNA_basepairs.dat.gz - truncating
søn 22 apr 2007 16:32:33 CEST|rosetta@home|[file_xfer] Finished download of file jump_templates_RNA_basepairs.dat.gz
søn 22 apr 2007 16:32:33 CEST|rosetta@home|[file_xfer] Throughput 6793 bytes/sec
søn 22 apr 2007 16:32:33 CEST|rosetta@home|[file_xfer] Started download of file Paa.gz
søn 22 apr 2007 16:32:33 CEST|rosetta@home|[error] Checksum or signature error for jump_templates_RNA_basepairs.dat.gz
søn 22 apr 2007 16:32:34 CEST|rosetta@home|Incomplete read of 2727.000000 < 5KB for Paa.gz - truncating
søn 22 apr 2007 16:32:34 CEST|rosetta@home|[file_xfer] Finished download of file Paa.gz
søn 22 apr 2007 16:32:34 CEST|rosetta@home|[file_xfer] Throughput 6921 bytes/sec
søn 22 apr 2007 16:32:34 CEST|rosetta@home|[file_xfer] Started download of file Paa_n.gz
søn 22 apr 2007 16:32:34 CEST|rosetta@home|[error] Checksum or signature error for Paa.gz
søn 22 apr 2007 16:32:35 CEST|rosetta@home|Incomplete read of 2733.000000 < 5KB for Paa_n.gz - truncating
søn 22 apr 2007 16:32:35 CEST|rosetta@home|[file_xfer] Finished download of file Paa_n.gz
søn 22 apr 2007 16:32:35 CEST|rosetta@home|[file_xfer] Throughput 6958 bytes/sec
søn 22 apr 2007 16:32:35 CEST|rosetta@home|[file_xfer] Started download of file Paa_pp.gz
søn 22 apr 2007 16:32:35 CEST|rosetta@home|[error] Checksum or signature error for Paa_n.gz
søn 22 apr 2007 16:32:36 CEST|rosetta@home|Incomplete read of 2735.000000 < 5KB for Paa_pp.gz - truncating
søn 22 apr 2007 16:32:36 CEST|rosetta@home|[file_xfer] Finished download of file Paa_pp.gz
søn 22 apr 2007 16:32:36 CEST|rosetta@home|[file_xfer] Throughput 6801 bytes/sec
søn 22 apr 2007 16:32:36 CEST|rosetta@home|[file_xfer] Started download of file paircutoffs.gz
søn 22 apr 2007 16:32:36 CEST|rosetta@home|[error] Checksum or signature error for Paa_pp.gz
søn 22 apr 2007 16:32:38 CEST|rosetta@home|Incomplete read of 2743.000000 < 5KB for paircutoffs.gz - truncating
søn 22 apr 2007 16:32:38 CEST|rosetta@home|[file_xfer] Finished download of file paircutoffs.gz
søn 22 apr 2007 16:32:38 CEST|rosetta@home|[file_xfer] Throughput 6981 bytes/sec
søn 22 apr 2007 16:32:38 CEST|rosetta@home|[file_xfer] Started download of file pdbpairstats_fine.gz
søn 22 apr 2007 16:32:38 CEST|rosetta@home|[error] Checksum or signature error for paircutoffs.gz
søn 22 apr 2007 16:32:39 CEST|rosetta@home|Incomplete read of 2757.000000 < 5KB for pdbpairstats_fine.gz - truncating
søn 22 apr 2007 16:32:39 CEST|rosetta@home|[file_xfer] Finished download of file pdbpairstats_fine.gz
søn 22 apr 2007 16:32:39 CEST|rosetta@home|[file_xfer] Throughput 6902 bytes/sec
søn 22 apr 2007 16:32:39 CEST|rosetta@home|[file_xfer] Started download of file phi.theta.36.HS.resmooth.gz
søn 22 apr 2007 16:32:39 CEST|rosetta@home|[error] Checksum or signature error for pdbpairstats_fine.gz
søn 22 apr 2007 16:32:41 CEST|rosetta@home|Incomplete read of 2771.000000 < 5KB for phi.theta.36.HS.resmooth.gz - truncating
søn 22 apr 2007 16:32:41 CEST|rosetta@home|[file_xfer] Finished download of file rosetta_5.59_i686-pc-linux-gnu
søn 22 apr 2007 16:32:41 CEST|rosetta@home|[file_xfer] Throughput 168980 bytes/sec
søn 22 apr 2007 16:32:41 CEST|rosetta@home|[file_xfer] Finished download of file phi.theta.36.HS.resmooth.gz
søn 22 apr 2007 16:32:41 CEST|rosetta@home|[file_xfer] Throughput 7223 bytes/sec
søn 22 apr 2007 16:32:41 CEST|rosetta@home|[file_xfer] Started download of file phi.theta.36.SS.resmooth.gz
søn 22 apr 2007 16:32:41 CEST|rosetta@home|[file_xfer] Started download of file plane_data_table_1015.dat.gz
søn 22 apr 2007 16:32:41 CEST|rosetta@home|[error] Checksum or signature error for phi.theta.36.HS.resmooth.gz
søn 22 apr 2007 16:32:43 CEST|rosetta@home|Incomplete read of 2771.000000 < 5KB for phi.theta.36.SS.resmooth.gz - truncating
søn 22 apr 2007 16:32:43 CEST|rosetta@home|Incomplete read of 2773.000000 < 5KB for plane_data_table_1015.dat.gz - truncating
søn 22 apr 2007 16:32:43 CEST|rosetta@home|[file_xfer] Finished download of file phi.theta.36.SS.resmooth.gz
søn 22 apr 2007 16:32:43 CEST|rosetta@home|[file_xfer] Throughput 7158 bytes/sec
søn 22 apr 2007 16:32:43 CEST|rosetta@home|[file_xfer] Finished download of file plane_data_table_1015.dat.gz
søn 22 apr 2007 16:32:43 CEST|rosetta@home|[file_xfer] Throughput 7006 bytes/sec
søn 22 apr 2007 16:32:43 CEST|rosetta@home|[file_xfer] Started download of file rna_base_pair_xy.dat.gz
søn 22 apr 2007 16:32:43 CEST|rosetta@home|[file_xfer] Started download of file rna_vdw_parameter.dat.gz
søn 22 apr 2007 16:32:43 CEST|rosetta@home|[error] Checksum or signature error for phi.theta.36.SS.resmooth.gz
søn 22 apr 2007 16:32:43 CEST|rosetta@home|[error] Checksum or signature error for plane_data_table_1015.dat.gz
søn 22 apr 2007 16:32:45 CEST|rosetta@home|Incomplete read of 2763.000000 < 5KB for rna_base_pair_xy.dat.gz - truncating
søn 22 apr 2007 16:32:45 CEST|rosetta@home|Incomplete read of 2765.000000 < 5KB for rna_vdw_parameter.dat.gz - truncating
søn 22 apr 2007 16:32:45 CEST|rosetta@home|[file_xfer] Finished download of file rna_base_pair_xy.dat.gz
søn 22 apr 2007 16:32:45 CEST|rosetta@home|[file_xfer] Throughput 7181 bytes/sec
søn 22 apr 2007 16:32:45 CEST|rosetta@home|[file_xfer] Finished download of file rna_vdw_parameter.dat.gz
søn 22 apr 2007 16:32:45 CEST|rosetta@home|[file_xfer] Throughput 7028 bytes/sec
søn 22 apr 2007 16:32:45 CEST|rosetta@home|[file_xfer] Started download of file Rama_smooth_dyn.dat_ss_6.4.gz
søn 22 apr 2007 16:32:45 CEST|rosetta@home|[file_xfer] Started download of file SASA-angles.dat.gz
søn 22 apr 2007 16:32:45 CEST|rosetta@home|[error] Checksum or signature error for rna_base_pair_xy.dat.gz
søn 22 apr 2007 16:32:45 CEST|rosetta@home|[error] Checksum or signature error for rna_vdw_parameter.dat.gz
søn 22 apr 2007 16:32:46 CEST|rosetta@home|Incomplete read of 2775.000000 < 5KB for Rama_smooth_dyn.dat_ss_6.4.gz - truncating
søn 22 apr 2007 16:32:46 CEST|rosetta@home|Incomplete read of 2751.000000 < 5KB for SASA-angles.dat.gz - truncating
søn 22 apr 2007 16:32:46 CEST|rosetta@home|[file_xfer] Finished download of file Rama_smooth_dyn.dat_ss_6.4.gz
søn 22 apr 2007 16:32:46 CEST|rosetta@home|[file_xfer] Throughput 7203 bytes/sec
søn 22 apr 2007 16:32:46 CEST|rosetta@home|[file_xfer] Finished download of file SASA-angles.dat.gz
søn 22 apr 2007 16:32:46 CEST|rosetta@home|[file_xfer] Throughput 6927 bytes/sec
søn 22 apr 2007 16:32:46 CEST|rosetta@home|[file_xfer] Started download of file SASA-masks.dat.gz
søn 22 apr 2007 16:32:46 CEST|rosetta@home|[file_xfer] Started download of file sasa_offsets.txt.gz
søn 22 apr 2007 16:32:46 CEST|rosetta@home|[error] Checksum or signature error for Rama_smooth_dyn.dat_ss_6.4.gz
søn 22 apr 2007 16:32:46 CEST|rosetta@home|[error] Checksum or signature error for SASA-angles.dat.gz
søn 22 apr 2007 16:32:47 CEST|rosetta@home|Incomplete read of 2749.000000 < 5KB for SASA-masks.dat.gz - truncating
søn 22 apr 2007 16:32:47 CEST|rosetta@home|Incomplete read of 2755.000000 < 5KB for sasa_offsets.txt.gz - truncating
søn 22 apr 2007 16:32:47 CEST|rosetta@home|[file_xfer] Finished download of file SASA-masks.dat.gz
søn 22 apr 2007 16:32:47 CEST|rosetta@home|[file_xfer] Throughput 7095 bytes/sec
søn 22 apr 2007 16:32:47 CEST|rosetta@home|[file_xfer] Finished download of file sasa_offsets.txt.gz
søn 22 apr 2007 16:32:47 CEST|rosetta@home|[file_xfer] Throughput 6929 bytes/sec
søn 22 apr 2007 16:32:47 CEST|rosetta@home|[file_xfer] Started download of file sc_hbW.gz
søn 22 apr 2007 16:32:47 CEST|rosetta@home|[file_xfer] Started download of file sasa_prob_cdf.txt.gz
søn 22 apr 2007 16:32:47 CEST|rosetta@home|[error] Checksum or signature error for SASA-masks.dat.gz
søn 22 apr 2007 16:32:47 CEST|rosetta@home|[error] Checksum or signature error for sasa_offsets.txt.gz
søn 22 apr 2007 16:32:48 CEST|rosetta@home|Incomplete read of 2735.000000 < 5KB for sc_hbW.gz - truncating
søn 22 apr 2007 16:32:48 CEST|rosetta@home|Incomplete read of 2753.000000 < 5KB for sasa_prob_cdf.txt.gz - truncating
søn 22 apr 2007 16:32:48 CEST|rosetta@home|[file_xfer] Finished download of file sc_hbW.gz
søn 22 apr 2007 16:32:48 CEST|rosetta@home|[file_xfer] Throughput 7147 bytes/sec
søn 22 apr 2007 16:32:48 CEST|rosetta@home|[file_xfer] Finished download of file sasa_prob_cdf.txt.gz
søn 22 apr 2007 16:32:48 CEST|rosetta@home|[file_xfer] Throughput 7019 bytes/sec
søn 22 apr 2007 16:32:48 CEST|rosetta@home|[file_xfer] Started download of file 2or1A.fasta.gz
søn 22 apr 2007 16:32:48 CEST|rosetta@home|[file_xfer] Started download of file 2or1A.psipred_ss2.gz
søn 22 apr 2007 16:32:48 CEST|rosetta@home|[error] Checksum or signature error for sc_hbW.gz
søn 22 apr 2007 16:32:48 CEST|rosetta@home|[error] Checksum or signature error for sasa_prob_cdf.txt.gz
søn 22 apr 2007 16:32:49 CEST|rosetta@home|Incomplete read of 2745.000000 < 5KB for 2or1A.fasta.gz - truncating
søn 22 apr 2007 16:32:49 CEST|rosetta@home|Incomplete read of 2755.000000 < 5KB for 2or1A.psipred_ss2.gz - truncating
søn 22 apr 2007 16:32:49 CEST|rosetta@home|[file_xfer] Finished download of file 2or1A.fasta.gz
søn 22 apr 2007 16:32:49 CEST|rosetta@home|[file_xfer] Throughput 7175 bytes/sec
søn 22 apr 2007 16:32:49 CEST|rosetta@home|[file_xfer] Finished download of file 2or1A.psipred_ss2.gz
søn 22 apr 2007 16:32:49 CEST|rosetta@home|[file_xfer] Throughput 7050 bytes/sec
søn 22 apr 2007 16:32:49 CEST|rosetta@home|[file_xfer] Started download of file boinc_aa2or1A03_05.200_v1_3.gz
søn 22 apr 2007 16:32:49 CEST|rosetta@home|[file_xfer] Started download of file boinc_aa2or1A09_05.200_v1_3.gz
søn 22 apr 2007 16:32:49 CEST|rosetta@home|[error] Checksum or signature error for 2or1A.fasta.gz
søn 22 apr 2007 16:32:49 CEST|rosetta@home|[error] Checksum or signature error for 2or1A.psipred_ss2.gz
søn 22 apr 2007 16:32:50 CEST|rosetta@home|Incomplete read of 2775.000000 < 5KB for boinc_aa2or1A03_05.200_v1_3.gz - truncating
søn 22 apr 2007 16:32:50 CEST|rosetta@home|Incomplete read of 2775.000000 < 5KB for boinc_aa2or1A09_05.200_v1_3.gz - truncating
søn 22 apr 2007 16:32:50 CEST|rosetta@home|[file_xfer] Finished download of file boinc_aa2or1A03_05.200_v1_3.gz
søn 22 apr 2007 16:32:50 CEST|rosetta@home|[file_xfer] Throughput 7000 bytes/sec
søn 22 apr 2007 16:32:50 CEST|rosetta@home|[file_xfer] Finished download of file boinc_aa2or1A09_05.200_v1_3.gz
søn 22 apr 2007 16:32:50 CEST|rosetta@home|[file_xfer] Throughput 6846 bytes/sec
søn 22 apr 2007 16:32:50 CEST|rosetta@home|[file_xfer] Started download of file 2or1.pdb.gz
søn 22 apr 2007 16:32:50 CEST|rosetta@home|[file_xfer] Started download of file symm_fold_and_dock_description.txt
søn 22 apr 2007 16:32:50 CEST|rosetta@home|[error] Checksum or signature error for boinc_aa2or1A03_05.200_v1_3.gz
søn 22 apr 2007 16:32:50 CEST|rosetta@home|[error] Checksum or signature error for boinc_aa2or1A09_05.200_v1_3.gz
søn 22 apr 2007 16:32:51 CEST|rosetta@home|Incomplete read of 2739.000000 < 5KB for 2or1.pdb.gz - truncating
søn 22 apr 2007 16:32:51 CEST|rosetta@home|[file_xfer] Finished download of file 2or1.pdb.gz
søn 22 apr 2007 16:32:51 CEST|rosetta@home|[file_xfer] Throughput 7167 bytes/sec
søn 22 apr 2007 16:32:51 CEST|rosetta@home|[file_xfer] Finished download of file symm_fold_and_dock_description.txt
søn 22 apr 2007 16:32:51 CEST|rosetta@home|[file_xfer] Throughput 187 bytes/sec
søn 22 apr 2007 16:32:51 CEST|rosetta@home|[error] Checksum or signature error for 2or1.pdb.gz
--------------------------------------------------------------------------------


Result ID is 74522006
From webpage:
--------------------------------------------------------------------------------
stderr out

<core_client_version>5.8.17</core_client_version>
<![CDATA[
<message>
WU download error: couldn't get input files:
<file_xfer_error>
<file_name>avgE_from_pdb.gz</file_name>
<error_code>-200</error_code>
</file_xfer_error>
<file_xfer_error>
<file_name>bbdep02.May.sortlib.gz</file_name>
<error_code>-200</error_code>
</file_xfer_error>

</message>
]]>
--------------------------------------------------------------------------------
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Message 39815 - Posted: 24 Apr 2007, 17:52:53 UTC
Last modified: 24 Apr 2007, 17:54:27 UTC

After suspending all jobs und restart the computer this WU (SEARCH_PAIRINGS_-1tit) crashs.
a.
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genes
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Message 39909 - Posted: 26 Apr 2007, 11:38:49 UTC

I am seeing Rosetta WU's crashing the graphics again. This after a long period of working very nicely. Running with BOINC 5.9.4 on winXP. Have to disable the screensaver in order to keep my machines from locking up. When locked up, I can usually do a ctrl-alt-del to get the task manager and/or show the taskbar and see that a Rosetta WU is running. Closing the BOINC mgr, then exiting the BOINC process gives back full control, then I can start all over.

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Message boards : Number crunching : Problems with Rosetta version 5.59



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