Problems with Rosetta version 5.59

Message boards : Number crunching : Problems with Rosetta version 5.59

To post messages, you must log in.

Previous · 1 . . . 4 · 5 · 6 · 7

AuthorMessage
Rhiju
Volunteer moderator

Send message
Joined: 8 Jan 06
Posts: 223
Credit: 3,546
RAC: 0
Message 40259 - Posted: 3 May 2007, 8:20:04 UTC - in response to Message 40181.  

Hi all: Thanks for your comments -- and sorry for being out of touch. We're a bit understaffed at the moment. Let me take a look at the "check skipped" issue. I'll be getting back in the loop this weekend, after our next round of papers is finalized -- also, I've just set up checkpointing for the other long Rosetta mode (fold and dock), so that will probably help reduce any remaining error!

Sees that Rosie staff do not look at this forum very often so has to be patient!
Rhiju Apr 2. 8.
and Mod Sense Apr 12. 18.
Expect everyone is v busy but would appreciate an answer.


I only see one such WU. I've not seen such an issue before, so I had no advice to offer.

Rhiju, would this Workunit error - check skipped state be a problem on the validator? There don't appear to be any indications of a problem on the client side.

[edit] Here's a thread that discusses the check skipped error. But they didn't really seem to reach a concrete cause/resolution there.


ID: 40259 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
mdettweiler
Avatar

Send message
Joined: 15 Oct 06
Posts: 33
Credit: 2,509
RAC: 0
Message 40274 - Posted: 3 May 2007, 15:41:54 UTC - in response to Message 40259.  

Hi all: Thanks for your comments -- and sorry for being out of touch. We're a bit understaffed at the moment. Let me take a look at the "check skipped" issue. I'll be getting back in the loop this weekend, after our next round of papers is finalized -- also, I've just set up checkpointing for the other long Rosetta mode (fold and dock), so that will probably help reduce any remaining error!


So...are you saying that fold and dock hasn't had any checkpointing up until now? No wonder I kept on thinking it was skipping a checkpoint! That's because I kept on getting fold-and-dock workunits.
ID: 40274 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Mod.Sense
Volunteer moderator

Send message
Joined: 22 Aug 06
Posts: 4018
Credit: 0
RAC: 0
Message 40275 - Posted: 3 May 2007, 16:27:25 UTC

All types of tasks write their results at the end of a model. The fold and dock tasks typically take more time to complete a model. What most people were observing was the error in calculcating % complete when restarting a task.

The new version (5.62) corrects the % complete calculation, and allows more types of tasks to checkpoint in mid-model. Being able to checkpoint in mid-model is especially important for tasks with a long runtime per model completed, such as many of the fold and dock tasks.
Rosetta Moderator: Mod.Sense
ID: 40275 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Previous · 1 . . . 4 · 5 · 6 · 7

Message boards : Number crunching : Problems with Rosetta version 5.59



©2022 University of Washington
https://www.bakerlab.org