Rosetta 4.0+

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Trotador

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Message 90454 - Posted: 1 Mar 2019, 5:18:14 UTC

Many robetta units failing since a couple of days. Related or not I'm seeing up to 3 Gb RAM usage in these wus.

Both with Rosetta v4.08 x86_64-pc-linux-gnu and Rosetta v4.07 i686-pc-linux-gnu applications

<message>process got signal 11</message>
<stderr_txt>
command: ../../projects/boinc.bakerlab.org_rosetta/rosetta_4.08_x86_64-pc-linux-gnu @rb_02_26_1348_1494_ab_t000__robetta_FLAGS -in::file::fasta t000_.fasta -psipred_ss2 t000_.spider3_ss2 -kill_hairpins t000_.nobuformat.spider3_ss2 -jumps:pairing_file t000_.fasta.bbcontacts.jumps -abinitio::use_filters false -skip_convergence_check -jumps:overlap_chainbreak -seq_sep_stages 1 1 1 -ramp_chainbreaks -sep_switch_accelerate 0.8 -jumps:random_sheets 4 4 5 2 3 1 1 1 1 -constraints::cst_file t000_.fasta.CB.cst -constraints:cst_weight 5.0 -constraints::cst_fa_file t000_.fasta.MIN.cst -constraints:cst_fa_weight 5.0 -in:file:boinc_wu_zip rb_02_26_1348_1494_ab_t000__robetta.zip -frag3 rb_02_26_1348_1494_ab_t000__robetta.200.3mers.index.gz -fragA rb_02_26_1348_1494_ab_t000__robetta.200.9mers.index.gz -fragB rb_02_26_1348_1494_ab_t000__robetta.200.7mers.index.gz -nstruct 10000 -cpu_run_time 28800 -watchdog -boinc:max_nstruct 600 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 1796799
Starting watchdog...
Watchdog active.
BOINC:: CPU time: 43760.1s, 14400s + 28800s[2019- 2-28 10:15:31:] :: BOINC
WARNING! cannot get file size for default.out.gz: could not open file.
Output exists: default.out.gz Size: -1
InternalDecoyCount: 0 (GZ)
-----
0
-----
Stream information inconsistent.
Writing W_0000001
======================================================
DONE :: 1 starting structures 43760.1 cpu seconds
This process generated 1 decoys from 1 attempts
======================================================
10:15:31 (12640): called boinc_finish(0)
pure virtual method called
terminate called without an active exception
</stderr_txt>
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Message 90458 - Posted: 1 Mar 2019, 15:25:24 UTC
Last modified: 1 Mar 2019, 15:27:45 UTC

rb_02_27_1365_1516_ab_t000__h002_robetta_IGNORE_THE_REST_04_11_818741_1_0

Error while computing, first part of stderr:
<core_client_version>7.12.1</core_client_version>
<![CDATA[
<message>
(unknown error) - exit code -1073741819 (0xc0000005)</message>
<stderr_txt>
2bd8cf90 fffffffe 1aa9ea30 rosetta_4.07_windows_x86_64!+0x0 
d87520f0 80ec0614 2bd97a60 00000001 0df71330 1aa32fd0 rosetta_4.07_windows_x86_64!+0x0 
d8752120 80e4fe32 1ccf98b0 80f6ea95 0df70780 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8752160 80ec0048 0de15a90 2bd8d800 00000000 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d87521a0 80ec0614 0df70780 00000001 fffffffe 1aa9f270 rosetta_4.07_windows_x86_64!+0x0 
d87521d0 80e4fe32 1ccf94b0 80f6ea95 2bd97920 2bd97920 rosetta_4.07_windows_x86_64!+0x0 
d8752210 80ec0048 0de174b0 2bd8cea0 0df71800 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8752250 80ec0614 fffffffe 00000001 00000000 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8752280 80e4fe32 1ccf92d0 2bd97470 0df71800 1aa33c30 rosetta_4.07_windows_x86_64!+0x0 
d87522c0 80ec0048 0de16fe0 2bd8dfe0 2bd98050 2bd98050 rosetta_4.07_windows_x86_64!+0x0 
d8752300 80ec0614 00000000 00000001 0df70ba0 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8752330 80e4fe32 1ccf9410 1aa319d0 fffffffe 1aa9fcc0 rosetta_4.07_windows_x86_64!+0x0 
d8752370 80ec0048 0de16640 2bd8db70 0df70ba0 1aa33ce0 rosetta_4.07_windows_x86_64!+0x0 
d87523b0 80ec0614 0df71e30 00000001 2bd97ab0 2bd97ab0 rosetta_4.07_windows_x86_64!+0x0 
d87523e0 80e4fe32 1ccf9830 1aaa1210 00000000 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8752420 80ec0048 0de15250 2bd8df80 fffffffe 1aaa14d0 rosetta_4.07_windows_x86_64!+0x0 
d8752460 80ec0614 2bd980a0 00000001 0df70fc0 1aa32160 rosetta_4.07_windows_x86_64!+0x0 
d8752490 80e4fe32 1ccf9250 80f6ea95 0df723b0 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d87524d0 80ec0048 0de16010 2bd8df40 00000000 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8752510 80ec0614 0df723b0 00000001 fffffffe 1aa9f950 rosetta_4.07_windows_x86_64!+0x0 
d8752540 80e4fe32 1ccf9710 80f6ea95 2bd97b00 2bd97b00 rosetta_4.07_windows_x86_64!+0x0 
d8752580 80ec0048 0de16f30 2bd8d3f0 0df718b0 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d87525c0 80ec0614 fffffffe 00000001 00000000 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d87525f0 80e4fe32 1ccf9170 2bd97bf0 0df718b0 1aa33970 rosetta_4.07_windows_x86_64!+0x0 
d8752630 80ec0048 0de159e0 2bd8ce50 2bd97e20 2bd97e20 rosetta_4.07_windows_x86_64!+0x0 
d8752670 80ec0614 00000000 00000001 0df72670 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d87526a0 80e4fe32 1ccf93f0 1aa32e70 fffffffe 1aa9fb60 rosetta_4.07_windows_x86_64!+0x0 
d87526e0 80ec0048 0de171f0 2bd8def0 0df72670 1aa31920 rosetta_4.07_windows_x86_64!+0x0 
d8752720 80ec0614 0df72eb0 00000001 2bd97f10 2bd97f10 rosetta_4.07_windows_x86_64!+0x0 
d8752750 80e4fe32 1ccf93d0 1aaa0a80 00000000 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8752790 80ec0048 0de15f60 2bd8d4e0 fffffffe 1aaa1b00 rosetta_4.07_windows_x86_64!+0x0 
d87527d0 80ec0614 2bd96e30 00000001 0df74980 1aa34470 rosetta_4.07_windows_x86_64!+0x0 
d8752800 80e4fe32 1ccf91f0 80f6ea95 0df751c0 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8752840 80ec0048 0de15930 2bd8de90 00000000 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8752880 80ec0614 0df751c0 00000001 fffffffe 1aaa1f20 rosetta_4.07_windows_x86_64!+0x0 
d87528b0 80e4fe32 1ccf9490 80f6ea95 2bd97d30 2bd97d30 rosetta_4.07_windows_x86_64!+0x0 
d87528f0 80ec0048 0de150f0 2bd8e030 0df736f0 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8752930 80ec0614 fffffffe 00000001 00000000 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8752960 80e4fe32 1ccf9370 2bd97290 0df736f0 1aa31d40 rosetta_4.07_windows_x86_64!+0x0 
d87529a0 80ec0048 0de155c0 2bd8cef0 2bd97970 2bd97970 rosetta_4.07_windows_x86_64!+0x0 
d87529e0 80ec0614 00000000 00000001 0df73b10 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8752a10 80e4fe32 1ccf9690 1aa32f20 fffffffe 1aa9f740 rosetta_4.07_windows_x86_64!+0x0 
d8752a50 80ec0048 0de15040 2bd8d3a0 0df73b10 1aa31a80 rosetta_4.07_windows_x86_64!+0x0 
d8752a90 80ec0614 0df74e50 00000001 2bd97420 2bd97420 rosetta_4.07_windows_x86_64!+0x0 
d8752ac0 80e4fe32 1ccf9670 1aaa0df0 00000000 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8752b00 80ec0048 0de16590 2bd8cdc0 fffffffe 1aaa1dc0 rosetta_4.07_windows_x86_64!+0x0 
d8752b40 80ec0614 2bd974c0 00000001 0df74b90 1aa33600 rosetta_4.07_windows_x86_64!+0x0 
d8752b70 80e4fe32 1ccf9390 80f6ea95 0df73220 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8752bb0 80ec0048 0de16d20 2bd8d350 00000000 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8752bf0 80ec0614 0df73220 00000001 fffffffe 1aaa1fd0 rosetta_4.07_windows_x86_64!+0x0 
d8752c20 80e4fe32 1ccf9870 80f6ea95 2bd98c30 2bd98c30 rosetta_4.07_windows_x86_64!+0x0 
d8752c60 80ec0048 0de162d0 2bd8d210 0df748d0 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8752ca0 80ec0614 fffffffe 00000001 00000000 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8752cd0 80e4fe32 1ccf9650 2bd98ff0 0df748d0 1aa307f0 rosetta_4.07_windows_x86_64!+0x0 
d8752d10 80ec0048 0de16c70 2bd8dae0 2bd98d70 2bd98d70 rosetta_4.07_windows_x86_64!+0x0 
d8752d50 80ec0614 00000000 00000001 0df74820 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8752d80 80e4fe32 1ccf9330 1aa30690 fffffffe 1aa9fa00 rosetta_4.07_windows_x86_64!+0x0 
d8752dc0 80ec0048 0de164e0 2bd8d7b0 0df74820 1aa305e0 rosetta_4.07_windows_x86_64!+0x0 
d8752e00 80ec0614 0df73dd0 00000001 2bd98fa0 2bd98fa0 rosetta_4.07_windows_x86_64!+0x0 
d8752e30 80e4fe32 1ccf9810 1aa9fab0 00000000 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8752e70 80ec0048 0de16220 2bd8d490 fffffffe 1aa9fc10 rosetta_4.07_windows_x86_64!+0x0 
d8752eb0 80ec0614 09b49530 00000001 0e28e380 1aa2ffb0 rosetta_4.07_windows_x86_64!+0x0 
d8752ee0 80e4fe32 1ccf93b0 80f6ea95 0df74f00 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8752f20 80ec0048 0de16dd0 2bd8dbd0 00000000 80f6eac6 rosetta_4.07_windows_x86_64!+0x0 
d8752f60 80ec0614 0df74f00 00000001 fffffffe 1aa9fe20 rosetta_4.07_windows_x86_64!+0x0 
d8752f90 80e4fe32 1ccf9850 80f6ea95 2bd991d0 2bd991d0 rosetta_4.07_windows_x86_64!+0x0 
d8752fd0 80ec0048 0de14ee0 2bd8d1c0 0df73010 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8753010 80ec0614 fffffffe 00000001 00000000 80f6eac6 rosetta_4.07_windows_x86_64!+0x0 
d8753040 80e4fe32 1ccf9450 2bd98a00 0df73010 1aa301c0 rosetta_4.07_windows_x86_64!+0x0 
d8753080 80ec0048 0de16380 2bd8d710 09b498a0 09b498a0 rosetta_4.07_windows_x86_64!+0x0 
d87530c0 80ec0614 00000000 00000001 0df730c0 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d87530f0 80e4fe32 1ccf9950 1aa2f400 fffffffe 1aaa0660 rosetta_4.07_windows_x86_64!+0x0 
d8753130 80ec0048 0de15b40 2bd8d0d0 0df730c0 1aa2f090 rosetta_4.07_windows_x86_64!+0x0 
d8753170 80ec0614 0df73c70 00000001 09b49d00 09b49d00 rosetta_4.07_windows_x86_64!+0x0 
d87531a0 80e4fe32 1ccf9350 1aa2f090 00000000 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d87531e0 80ec0048 0de16850 2bd8ddf0 fffffffe 1aaa1000 rosetta_4.07_windows_x86_64!+0x0 
d8753220 80ec0614 2bd98280 00000001 0df73430 1aa31870 rosetta_4.07_windows_x86_64!+0x0 
d8753250 80e4fe32 1ccf92b0 80f6ea95 0df753d0 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8753290 80ec0048 0de15eb0 2bd8d6c0 00000000 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d87532d0 80ec0614 0df753d0 00000001 fffffffe 1aaa24a0 rosetta_4.07_windows_x86_64!+0x0 
d8753300 80e4fe32 1ccf9550 80f6eac6 2bd986e0 2bd986e0 rosetta_4.07_windows_x86_64!+0x0 
d8753340 80ec0048 0de15670 2bd8de50 0df75480 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8753380 80ec0614 fffffffe 00000001 00000000 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d87533b0 80e4fe32 1ccf9470 2bd98370 0df75480 1aa2f4b0 rosetta_4.07_windows_x86_64!+0x0 
d87533f0 80ec0048 0de15ca0 2bd8d030 2bd99220 2bd99220 rosetta_4.07_windows_x86_64!+0x0 
d8753430 80ec0614 1a8b50e0 00000001 0df73d20 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8753460 80e4fe32 1ccf96d0 1aa30060 fffffffe 1aa30110 rosetta_4.07_windows_x86_64!+0x0 
d87534a0 80ec0048 0de166f0 2bd8ce00 0df73d20 1aa2fb90 rosetta_4.07_windows_x86_64!+0x0 
d87534e0 80ec0614 0df729e0 00000001 2bd98550 2bd98550 rosetta_4.07_windows_x86_64!+0x0 
d8753510 80e4fe32 1ccf96b0 1aaa33c0 00000000 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8753550 80ec0048 0de16bc0 2bd8d270 fffffffe 1aaa3cb0 rosetta_4.07_windows_x86_64!+0x0 
d8753590 80ec0614 2bd98e60 00000001 0df742a0 1aa2ff00 rosetta_4.07_windows_x86_64!+0x0 
d87535c0 80e4fe32 1ccf96f0 80f6ea95 0df74400 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8753600 80ec0048 0de16e80 2bd8dd00 00000000 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8753640 80ec0614 0df74400 00000001 fffffffe 1aaa2e40 rosetta_4.07_windows_x86_64!+0x0 
d8753670 80e4fe32 1ccf9430 80f6ea95 2bd980f0 2bd980f0 rosetta_4.07_windows_x86_64!+0x0 
d87536b0 80ec0048 0de14f90 2bd8e0c0 0df72bf0 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d87536f0 80ec0614 fffffffe 00000001 00000000 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8753720 80e4fe32 1ccf95f0 2bd98e10 0df72bf0 1aa31240 rosetta_4.07_windows_x86_64!+0x0 
d8753760 80ec0048 0de157d0 2bd8cd70 2bd98730 2bd98730 rosetta_4.07_windows_x86_64!+0x0 
d87537a0 80ec0614 00000000 00000001 00000002 80f6eac6 rosetta_4.07_windows_x86_64!+0x0 
d87537d0 80e4fe32 1ccf8b10 1aa30ab0 fffffffe 1aaa35d0 rosetta_4.07_windows_x86_64!+0x0 
d8753810 80ec0048 0de14ac0 2bd8dda0 0e28dd50 1aa30e20 rosetta_4.07_windows_x86_64!+0x0 
d8753850 80ec0614 0df75740 00000001 2bd983c0 2bd983c0 rosetta_4.07_windows_x86_64!+0x0 
d8753880 80e4fe32 1ccf8a30 1aaa3f70 00000000 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d87538c0 80ec0048 0de17400 2bd8d170 fffffffe 1aaa4390 rosetta_4.07_windows_x86_64!+0x0 
d8753900 80ec0614 2bd985a0 00000001 0df76c90 1aa317c0 rosetta_4.07_windows_x86_64!+0x0 
d8753930 80e4fe32 1ccf8af0 80f6ea95 0df77c60 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8753970 80ec0048 0de15510 2bd8d9a0 00000000 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d87539b0 80ec0614 0df77c60 00000001 fffffffe 1aaa47b0 rosetta_4.07_windows_x86_64!+0x0 
d87539e0 80e4fe32 1ccf8a10 80f6ea95 2bd98910 2bd98910 rosetta_4.07_windows_x86_64!+0x0 
d8753a20 80ec0048 0de14cd0 2bd8d070 0df77a50 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8753a60 80ec0614 fffffffe 00000001 00000000 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8753a90 80e4fe32 1ccf89b0 2bd99270 0df77a50 1aa2f140 rosetta_4.07_windows_x86_64!+0x0 
d8753ad0 80ec0048 0de15460 2bd8d620 2bd984b0 2bd984b0 rosetta_4.07_windows_x86_64!+0x0 
d8753b10 80ec0614 00000000 00000001 0df77fd0 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8753b40 80e4fe32 1ccf9110 1aa2efe0 fffffffe 1aaa4440 rosetta_4.07_windows_x86_64!+0x0 
d8753b80 80ec0048 0de151a0 2bd8d5e0 0df77fd0 1aa2fa30 rosetta_4.07_windows_x86_64!+0x0 
d8753bc0 80ec0614 0df779a0 00000001 2bd98be0 2bd98be0 rosetta_4.07_windows_x86_64!+0x0 
d8753bf0 80e4fe32 1ccf8ff0 1aaa28c0 00000000 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8753c30 80ec0048 0de16430 2bd8d300 fffffffe 1aaa2a20 rosetta_4.07_windows_x86_64!+0x0 
d8753c70 80ec0614 2bd99360 00000001 0df765b0 1aa30480 rosetta_4.07_windows_x86_64!+0x0 
d8753ca0 80e4fe32 1ccf8f90 80f6ea95 0df762f0 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8753ce0 80ec0048 0de14a10 2bd8cd10 00000000 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8753d20 80ec0614 0df762f0 00000001 fffffffe 1aaa3520 rosetta_4.07_windows_x86_64!+0x0 
d8753d50 80e4fe32 1ccf8df0 80f6ea95 2bd9a3a0 2bd9a3a0 rosetta_4.07_windows_x86_64!+0x0 
d8753d90 80ec0048 0de14e30 2bd8d680 0df76920 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8753dd0 80ec0614 fffffffe 00000001 00000000 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8753e00 80e4fe32 1ccf90f0 2bd9a760 0df76920 1aa2f560 rosetta_4.07_windows_x86_64!+0x0 
d8753e40 80ec0048 0de17350 2bd8d120 2bd99770 2bd99770 rosetta_4.07_windows_x86_64!+0x0 
d8753e80 80ec0614 00000000 00000001 0df75c10 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8753eb0 80e4fe32 1ccf8dd0 1aa2f980 fffffffe 1aaa2970 rosetta_4.07_windows_x86_64!+0x0 
d8753ef0 80ec0048 0de14d80 2bd8cf40 0df75c10 1aa31190 rosetta_4.07_windows_x86_64!+0x0 
d8753f30 80ec0614 0df76710 00000001 2bd9a710 2bd9a710 rosetta_4.07_windows_x86_64!+0x0 
d8753f60 80e4fe32 1ccf8a70 1aaa4910 00000000 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8753fa0 80ec0048 0de16b10 2bd8d450 fffffffe 1aaa2ef0 rosetta_4.07_windows_x86_64!+0x0 
d8753fe0 80ec0614 2bd99c20 00000001 0df77e70 1aa2ed20 rosetta_4.07_windows_x86_64!+0x0 
d8754010 80e4fe32 1ccf89d0 80f6ea95 0df763a0 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8754050 80ec0048 0de172a0 2bd8db20 00000000 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8754090 80ec0614 0df763a0 00000001 fffffffe 1aaa44f0 rosetta_4.07_windows_x86_64!+0x0 
d87540c0 80e4fe32 1ccf90d0 80f6ea95 2bd9a5d0 2bd9a5d0 rosetta_4.07_windows_x86_64!+0x0 
d8754100 80ec0048 0de15720 2bd8d760 0df760e0 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8754140 80ec0614 fffffffe 00000001 00000000 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8754170 80e4fe32 1ccf8d90 2bd9a2b0 0df760e0 1aa2d300 rosetta_4.07_windows_x86_64!+0x0 
d87541b0 80ec0048 0de17140 2bd8dc70 2bd99900 2bd99900 rosetta_4.07_windows_x86_64!+0x0 
d87541f0 80ec0614 00000000 00000001 0df76450 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d8754220 80e4fe32 1ccf8ad0 1aa2d1a0 fffffffe 1aaa3940 rosetta_4.07_windows_x86_64!+0x0 
d8754260 80ec0048 0de16a60 2bd8da30 0df76450 1aa2db40 rosetta_4.07_windows_x86_64!+0x0 
d87542a0 80ec0614 0df776e0 00000001 2bd99950 2bd99950 rosetta_4.07_windows_x86_64!+0x0 
d87542d0 80e4fe32 1ccf8cf0 1aaa4b20 00000000 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
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d875b700 80e4fe32 1ccf7630 3156cea0 fffffffe 09b62340 rosetta_4.07_windows_x86_64!+0x0 
d875b740 80ec0048 0de22a30 2bd897f0 1b57cca0 3156e970 rosetta_4.07_windows_x86_64!+0x0 
d875b780 80ec0614 1b57b490 00000001 2bd84050 2bd84050 rosetta_4.07_windows_x86_64!+0x0 
d875b7b0 80e4fe32 1ccf71d0 09b62ad0 00000000 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d875b7f0 80ec0048 0de23c10 2bd8a470 fffffffe 09b66ac0 rosetta_4.07_windows_x86_64!+0x0 
d875b830 80ec0614 2bd82f70 00000001 1b57dfe0 3156cdf0 rosetta_4.07_windows_x86_64!+0x0 
d875b860 80e4fe32 1ccf73d0 80f6ea95 1b57c040 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d875b8a0 80ec0048 0de22560 2bd89700 00000000 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d875b8e0 80ec0614 1b57c040 00000001 fffffffe 09b65e60 rosetta_4.07_windows_x86_64!+0x0 
d875b910 80e4fe32 1ccf7610 80f6ea95 2bd83880 2bd83880 rosetta_4.07_windows_x86_64!+0x0 
d875b950 80ec0048 0de22b90 2bd893f0 1b57df30 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d875b990 80ec0614 fffffffe 00000001 00000000 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d875b9c0 80e4fe32 1ccf7690 2bd83470 1b57df30 3156d000 rosetta_4.07_windows_x86_64!+0x0 
d875ba00 80ec0048 0de23110 2bd89cf0 2bd82d90 2bd82d90 rosetta_4.07_windows_x86_64!+0x0 
d875ba40 80ec0614 00000000 00000001 1b57c670 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d875ba70 80e4fe32 1ccf75f0 3156d4d0 fffffffe 09b67040 rosetta_4.07_windows_x86_64!+0x0 
d875bab0 80ec0048 0de23270 2bd896b0 1b57c670 3156ec30 rosetta_4.07_windows_x86_64!+0x0 
d875baf0 80ec0614 1b57db10 00000001 2bd840a0 2bd840a0 rosetta_4.07_windows_x86_64!+0x0 
d875bb20 80e4fe32 1ccf7950 09b65360 00000000 80f6ea95 rosetta_4.07_windows_x86_64!+0x0 
d875bb60 80ec0048 0de22610 2bd89670 fffffffe 09b65410 rosetta_4.07_windows_x86_64!+0x0 
d875bba0 80ec0614 2bd82f20 00000001 1b57c5c0 3156ece0 rosetta_4.07_windows_x86_64!+0x0 
d875bbd0 80e4fe32 1ccf77b0 048b01fe 1b57cf60 048b267d rosetta_4.07_windows_x86_64!+0x0 
d875bc10 80ec0048 0de237f0 2bd89e80 1ccf71e0 048b267d rosetta_4.07_windows_x86_64!+0x0 
d875bc50 80ec0614 00000008 00000001 00000336 0de238a0 rosetta_4.07_windows_x86_64!+0x0 
d875bc80 80e4fe32 1ccf7670 80c0437c 00000008 048b267d rosetta_4.07_windows_x86_64!+0x0 
d875bcc0 80ec0048 0de23b60 2bd891b0 1ccf7900 048b267d rosetta_4.07_windows_x86_64!+0x0 
d875bd00 80ec0614 00000008 00000001 00000336 0de22980 rosetta_4.07_windows_x86_64!+0x0 
d875bd30 80e4fe32 1ccf76d0 80c0437c 00000008 00000010 rosetta_4.07_windows_x86_64!+0x0 
d875bd70 80ec0048 0de235e0 2bd89b30 1ccf7910 00000000 rosetta_4.07_windows_x86_64!+0x0 
d875bdb0 80ec0614 ffffffff 00000001 00000008 00000010 rosetta_4.07_windows_x86_64!+0x0 
d875bde0 80e4fe32 1ccf75b0 2bd8a1c0 ffffffff 80c0437c rosetta_4.07_windows_x86_64!+0x0 
d875be20 80ec0048 1b6fc8e0 ffffffff 2bd8a1a0 2bd8a1c0 rosetta_4.07_windows_x86_64!+0x0 
d875be60 80ec0660 ffffffff 00000001 fffffffe 80efb576 rosetta_4.07_windows_x86_64!+0x0 
d875be90 80efe326 1ccf74b0 d875bf49 1a8d96e0 2fac6a00 rosetta_4.07_windows_x86_64!+0x0 
d875bed0 80efc3ed 1a37e180 00c47d60 00000008 80d268a5 rosetta_4.07_windows_x86_64!+0x0 
d875bf70 80e6904b 00f44918 00f44910 d875c029 00003360 rosetta_4.07_windows_x86_64!+0x0 
d875c080 80e576cf 1a381240 d875c190 1a381240 00c47d60 rosetta_4.07_windows_x86_64!+0x0 
d875c280 80fdef42 1a381240 00000024 1cc602a0 d875c390 rosetta_4.07_windows_x86_64!+0x0 
d875c440 8152b805 00000000 ffffffff 00000000 00000000 rosetta_4.07_windows_x86_64!cppdb::atomic_counter::get+0x0 
d875c470 81def30f 09bc63e0 09bc63e0 00000000 00bcc268 rosetta_4.07_windows_x86_64!xmlCleanupThreads+0x0 
d875ca60 81ded6bc 00000000 00bcc1b0 00bcc1b0 d875cb70 rosetta_4.07_windows_x86_64!xmlCleanupThreads+0x0 
d875ce00 81d396bd 00636630 d875d050 00636630 0000d3bb rosetta_4.07_windows_x86_64!xmlCleanupThreads+0x0 
d875ef30 81d3cb66 d875ef90 009ce650 00658c60 1a017380 rosetta_4.07_windows_x86_64!xmlCleanupThreads+0x0 
d875f160 80bef388 008ab140 008ab140 00658c80 00658c60 rosetta_4.07_windows_x86_64!xmlCleanupThreads+0x0 
d875fd90 80bf9c35 00000000 00000000 84df4838 00000000 rosetta_4.07_windows_x86_64!+0x0 
d875fdd0 038481f4 00000000 00000000 00000000 00000000 rosetta_4.07_windows_x86_64!+0x0 
d875fe00 0490a251 00000000 00000000 00000000 00000000 KERNEL32!BaseThreadInitThunk+0x0 
d875fe80 00000000 00000000 00000000 00000000 00000000 ntdll!RtlUserThreadStart+0x0 

*** Dump of thread ID 32763 (state: Initialized): ***

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Message 90459 - Posted: 1 Mar 2019, 15:29:21 UTC

And the second part of stderr (there seem to be some limit on post length):
- Information -
Status: Base Priority: Normal, Priority: Unknown, , Kernel Time: 6.000000, User Time: 0.000000, Wait Time: 823047872.000000

- Registers -
rax=0000000000000000 rbx=0000000000000000 rcx=0000000000000000 rdx=0000000000000000 rsi=0000000000000000 rdi=0000000000000000
r8=0000000000000000 r9=0000000000000000 r10=0000000000000000 r11=0000000000000000 r12=0000000000000000 r13=0000000000000000
r14=0000000000000000 r15=0000000000000000 rip=0000000000000000 rsp=0000000000000000 rbp=0000000000000000
cs=0000  ss=0000  ds=0000  es=0000  fs=0000  gs=0000             efl=00000000

- Callstack -
ChildEBP RetAddr  Args to Child
(-nosymbols- PC == 0)
00000000 00000000 00000000 00000000 00000000 00000000 !+0x0 

*** Dump of thread ID 30723973 (state: Unknown): ***

- Information -
Status: Base Priority: Normal, Priority: Unknown, , Kernel Time: 17179869184.000000, User Time: 21474965504.000000, Wait Time: 0.000000

- Registers -
rax=0000000000000000 rbx=0000000000000000 rcx=0000000000000000 rdx=0000000000000000 rsi=0000000000000000 rdi=0000000000000000
r8=0000000000000000 r9=0000000000000000 r10=0000000000000000 r11=0000000000000000 r12=0000000000000000 r13=0000000000000000
r14=0000000000000000 r15=0000000000000000 rip=0000000000000000 rsp=0000000000000000 rbp=0000000000000000
cs=0000  ss=0000  ds=0000  es=0000  fs=0000  gs=0000             efl=00000000

- Callstack -
ChildEBP RetAddr  Args to Child
(-nosymbols- PC == 0)
00000000 00000000 00000000 00000000 00000000 00000000 !+0x0 


*** Debug Message Dump ****


*** Foreground Window Data ***
    Window Name      : 
    Window Class     : 
    Window Process ID: 0
    Window Thread ID : 0

Exiting...

</stderr_txt>
]]>

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Trotador

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Message 90463 - Posted: 2 Mar 2019, 16:38:38 UTC - in response to Message 90454.  

Errors continue increasing

Many robetta units failing since a couple of days. Related or not I'm seeing up to 3 2Gb RAM usage in these wus.

Both with Rosetta v4.08 x86_64-pc-linux-gnu and Rosetta v4.07 i686-pc-linux-gnu applications

<message>process got signal 11</message>
<stderr_txt>
command: ../../projects/boinc.bakerlab.org_rosetta/rosetta_4.08_x86_64-pc-linux-gnu @rb_02_26_1348_1494_ab_t000__robetta_FLAGS -in::file::fasta t000_.fasta -psipred_ss2 t000_.spider3_ss2 -kill_hairpins t000_.nobuformat.spider3_ss2 -jumps:pairing_file t000_.fasta.bbcontacts.jumps -abinitio::use_filters false -skip_convergence_check -jumps:overlap_chainbreak -seq_sep_stages 1 1 1 -ramp_chainbreaks -sep_switch_accelerate 0.8 -jumps:random_sheets 4 4 5 2 3 1 1 1 1 -constraints::cst_file t000_.fasta.CB.cst -constraints:cst_weight 5.0 -constraints::cst_fa_file t000_.fasta.MIN.cst -constraints:cst_fa_weight 5.0 -in:file:boinc_wu_zip rb_02_26_1348_1494_ab_t000__robetta.zip -frag3 rb_02_26_1348_1494_ab_t000__robetta.200.3mers.index.gz -fragA rb_02_26_1348_1494_ab_t000__robetta.200.9mers.index.gz -fragB rb_02_26_1348_1494_ab_t000__robetta.200.7mers.index.gz -nstruct 10000 -cpu_run_time 28800 -watchdog -boinc:max_nstruct 600 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 1796799
Starting watchdog...
Watchdog active.
BOINC:: CPU time: 43760.1s, 14400s + 28800s[2019- 2-28 10:15:31:] :: BOINC
WARNING! cannot get file size for default.out.gz: could not open file.
Output exists: default.out.gz Size: -1
InternalDecoyCount: 0 (GZ)
-----
0
-----
Stream information inconsistent.
Writing W_0000001
======================================================
DONE :: 1 starting structures 43760.1 cpu seconds
This process generated 1 decoys from 1 attempts
======================================================
10:15:31 (12640): called boinc_finish(0)
pure virtual method called
terminate called without an active exception
</stderr_txt>
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Jim1348

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Message 90464 - Posted: 2 Mar 2019, 22:40:10 UTC - in response to Message 90463.  

Errors continue increasing

It appears that they are erring on all other machines too. That is not good.
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Jim1348

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Message 90472 - Posted: 4 Mar 2019, 16:53:20 UTC - in response to Message 90464.  
Last modified: 4 Mar 2019, 16:55:09 UTC

However, I just put Rosetta on a Ryzen 2600 running Ubuntu 16.04.5, and the 4.07 are working OK at the moment (18 hour work units) .
I have not received the 4.08 yet.
https://boinc.bakerlab.org/rosetta/results.php?hostid=3646802&offset=0&show_names=0&state=4&appid=

So if it is a problem with the work units, it seems rather selective as to hardware/software.
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Profile David E K
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Message 90473 - Posted: 4 Mar 2019, 19:12:32 UTC

There are a few large proteins that were submitted recently that are error prone. They should clear the queue soon as they complete.
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Message 90475 - Posted: 5 Mar 2019, 6:34:31 UTC

Application version: Rosetta v4.07 windows_intelx86
Device: 1759960, Task: 1060410033, and WU 955290262.
Name: rb_02_28_1385_1532_ab_t000__robetta_IGNORE_THE_REST_04_08_819097_97
Status: Error while computing
Exit status: -1073741819 (0xC0000005) STATUS_ACCESS_VIOLATION
<core_client_version>7.14.2</core_client_version>
<![CDATA[<message>(unknown error) - exit code -1073741819 (0xc0000005)</message>
command: projects/boinc.bakerlab.org_rosetta/rosetta_4.07_windows_intelx86.exe @rb_02_28_1385_1532_ab_t000__robetta_FLAGS -in::file::fasta t000_.fasta -psipred_ss2 t000_.spider3_ss2 -kill_hairpins t000_.nobuformat.spider3_ss2 -abinitio::use_filters true -in:file:boinc_wu_zip rb_02_28_1385_1532_ab_t000__robetta.zip -frag3 rb_02_28_1385_1532_ab_t000__robetta.200.3mers.index.gz -fragA rb_02_28_1385_1532_ab_t000__robetta.200.8mers.index.gz -fragB rb_02_28_1385_1532_ab_t000__robetta.200.4mers.index.gz -nstruct 10000 -cpu_run_time 28800 -watchdog -boinc:max_nstruct 600 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 1024608

Unhandled Exception Detected...
- Unhandled Exception Record -
Reason: Out Of Memory (C++ Exception) (0xe06d7363) at address 0x75BBC5AF
Engaging BOINC Windows Runtime Debugger...

- Unhandled Exception Detected...
- Unhandled Exception Record -
Reason: Access Violation (0xc0000005) at address 0x02897142 read attempt to address 0x00000044
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Message 90476 - Posted: 5 Mar 2019, 7:34:32 UTC

Application version: Rosetta v4.07 windows_intelx86
Device: 1759960, Task: 1060410043, and WU 955290282.
Name: rb_02_28_1385_1532_ab_t000__robetta_IGNORE_THE_REST_07_10_819097_97
Status: Error while computing
Exit status: -1073741819 (0xC0000005) STATUS_ACCESS_VIOLATION
<core_client_version>7.14.2</core_client_version>
<![CDATA[<message>(unknown error) - exit code -1073741819 (0xc0000005)</message>
command: projects/boinc.bakerlab.org_rosetta/rosetta_4.07_windows_intelx86.exe @rb_02_28_1385_1532_ab_t000__robetta_FLAGS -in::file::fasta t000_.fasta -psipred_ss2 t000_.spider3_ss2 -kill_hairpins t000_.nobuformat.spider3_ss2 -abinitio::use_filters true -in:file:boinc_wu_zip rb_02_28_1385_1532_ab_t000__robetta.zip -frag3 rb_02_28_1385_1532_ab_t000__robetta.200.3mers.index.gz -fragA rb_02_28_1385_1532_ab_t000__robetta.200.10mers.index.gz -fragB rb_02_28_1385_1532_ab_t000__robetta.200.7mers.index.gz -nstruct 10000 -cpu_run_time 28800 -watchdog -boinc:max_nstruct 600 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 1020268

Unhandled Exception Detected...
- Unhandled Exception Record -
Reason: Out Of Memory (C++ Exception) (0xe06d7363) at address 0x75BBC5AF

Engaging BOINC Windows Runtime Debugger...
Unhandled Exception Detected...
- Unhandled Exception Record -
Reason: Access Violation (0xc0000005) at address 0x02897142 read attempt to address 0x00000044
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Message 90477 - Posted: 5 Mar 2019, 8:21:05 UTC

tim_short_DHR_2H_curvebopp_rot1x16_rot2x32_rot3deltax36_z1x1_z2x0_0001_0001_fragments_abinitio_SAVE_ALL_OUT_818772_69_0

Error while computing:
<core_client_version>7.12.1</core_client_version>
<![CDATA[
<message>
(unknown error) - exit code -1073741819 (0xc0000005)</message>
<stderr_txt>
command: projects/boinc.bakerlab.org_rosetta/rosetta_4.07_windows_x86_64.exe -beta -frag3 00001.200.3mers -frag9 00001.200.9mers -abinitio::increase_cycles 10 -mute all -abinitio::fastrelax -relax::default_repeats 5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -abinitio::use_filters false -ex1 -ex2aro -in:file:boinc_wu_zip tim_short_DHR_2H_curvebopp_rot1x16_rot2x32_rot3deltax36_z1x1_z2x0_0001_0001_fragments_fold_data.zip -abinitio::rg_reweight 0.5 -out:file:silent default.out -silent_gz -mute all -in:file:native 00001.pdb -out:file:silent_struct_type binary -nstruct 10000 -cpu_run_time 28800 -watchdog -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 1579711
Starting watchdog...
Watchdog active.


Unhandled Exception Detected...

- Unhandled Exception Record -
Reason: Access Violation (0xc0000005) at address 0x00000200436F7261 

Engaging BOINC Windows Runtime Debugger...



********************


BOINC Windows Runtime Debugger Version 7.9.0


Dump Timestamp    : 03/05/19 09:01:12
Install Directory : C:\Program Files\BOINC\
Data Directory    : C:\ProgramData\BOINC
Project Symstore  : http://boinc.bakerlab.org/rosetta/symstore
LoadLibraryA( C:\ProgramData\BOINC\dbghelp.dll ): GetLastError = 126
Loaded Library    : dbghelp.dll
LoadLibraryA( C:\ProgramData\BOINC\symsrv.dll ): GetLastError = 126
LoadLibraryA( symsrv.dll ): GetLastError = 126
LoadLibraryA( C:\ProgramData\BOINC\srcsrv.dll ): GetLastError = 126
LoadLibraryA( srcsrv.dll ): GetLastError = 126
LoadLibraryA( C:\ProgramData\BOINC\version.dll ): GetLastError = 126
Loaded Library    : version.dll
Debugger Engine   : 4.0.5.0
Symbol Search Path: C:\ProgramData\BOINC\slots\3;C:\ProgramData\BOINC\projects\boinc.bakerlab.org_rosetta;srv*C:\ProgramData\BOINC\projects\boinc.bakerlab.org_rosetta\symbols*http://msdl.microsoft.com/download/symbols;srv*C:\ProgramData\BOINC\projects\boinc.bakerlab.org_rosetta\symbols*http://boinc.bakerlab.org/rosetta/symstore


ModLoad: 000000002b9b0000 0000000004995000 C:\ProgramData\BOINC\projects\boinc.bakerlab.org_rosetta\rosetta_4.07_windows_x86_64.exe (-exported- Symbols Loaded)
    Linked PDB Filename   : C:\cygwin64\home\boinc\Rosetta_4.07\main\source\ide\VisualStudio\x64\BoincRelease\rosetta_4.07_windows_x86_64.pdb

ModLoad: 00000000048a0000 00000000001ed000 C:\Windows\SYSTEM32\ntdll.dll (6.2.17763.292) (-exported- Symbols Loaded)
    Linked PDB Filename   : ntdll.pdb
    File Version          : 10.0.17763.345 (WinBuild.160101.0800)
    Company Name          : Microsoft Corporation
    Product Name          : Betriebssystem Microsoft&#174; Windows&#174;
    Product Version       : 10.0.17763.345

ModLoad: 0000000003830000 00000000000b3000 C:\Windows\System32\KERNEL32.DLL (6.2.17763.292) (-exported- Symbols Loaded)
    Linked PDB Filename   : kernel32.pdb
    File Version          : 10.0.17763.1 (WinBuild.160101.0800)
    Company Name          : Microsoft Corporation
    Product Name          : Betriebssystem Microsoft&#174; Windows&#174;
    Product Version       : 10.0.17763.1

ModLoad: 0000000001690000 0000000000293000 C:\Windows\System32\KERNELBASE.dll (6.2.17763.292) (-exported- Symbols Loaded)
    Linked PDB Filename   : kernelbase.pdb
    File Version          : 10.0.17763.1 (WinBuild.160101.0800)
    Company Name          : Microsoft Corporation
    Product Name          : Betriebssystem Microsoft&#174; Windows&#174;
    Product Version       : 10.0.17763.1

ModLoad: 0000000001d80000 000000000006d000 C:\Windows\System32\WS2_32.dll (6.2.17763.1) (-exported- Symbols Loaded)
    Linked PDB Filename   : ws2_32.pdb
    File Version          : 10.0.17763.345 (WinBuild.160101.0800)
    Company Name          : Microsoft Corporation
    Product Name          : Betriebssystem Microsoft&#174; Windows&#174;
    Product Version       : 10.0.17763.345

ModLoad: 0000000003970000 0000000000122000 C:\Windows\System32\RPCRT4.dll (6.2.17763.194) (-exported- Symbols Loaded)
    Linked PDB Filename   : rpcrt4.pdb
    File Version          : 10.0.17763.345 (WinBuild.160101.0800)
    Company Name          : Microsoft Corporation
    Product Name          : Betriebssystem Microsoft&#174; Windows&#174;
    Product Version       : 10.0.17763.345

ModLoad: 0000000003ce0000 0000000000197000 C:\Windows\System32\USER32.dll (6.2.17763.168) (-exported- Symbols Loaded)
    Linked PDB Filename   : user32.pdb
    File Version          : 10.0.17763.345 (WinBuild.160101.0800)
    Company Name          : Microsoft Corporation
    Product Name          : Betriebssystem Microsoft&#174; Windows&#174;
    Product Version       : 10.0.17763.345

ModLoad: 0000000000970000 0000000000020000 C:\Windows\System32\win32u.dll (6.2.17763.1) (-exported- Symbols Loaded)
    Linked PDB Filename   : win32u.pdb
    File Version          : 10.0.17763.1 (WinBuild.160101.0800)
    Company Name          : Microsoft Corporation
    Product Name          : Microsoft&#174; Windows&#174; Operating System
    Product Version       : 10.0.17763.1

ModLoad: 0000000004090000 0000000000029000 C:\Windows\System32\GDI32.dll (6.2.17763.1) (-exported- Symbols Loaded)
    Linked PDB Filename   : gdi32.pdb
    File Version          : 10.0.17763.1 (WinBuild.160101.0800)
    Company Name          : Microsoft Corporation
    Product Name          : Microsoft&#174; Windows&#174; Operating System
    Product Version       : 10.0.17763.1

ModLoad: 0000000001930000 000000000019a000 C:\Windows\System32\gdi32full.dll (6.2.17763.316) (-exported- Symbols Loaded)
    Linked PDB Filename   : gdi32full.pdb
    File Version          : 10.0.17763.316 (WinBuild.160101.0800)
    Company Name          : Microsoft Corporation
    Product Name          : Microsoft&#174; Windows&#174; Operating System
    Product Version       : 10.0.17763.316

ModLoad: 0000000000b20000 00000000000a0000 C:\Windows\System32\msvcp_win.dll (6.2.17763.1) (-exported- Symbols Loaded)
    Linked PDB Filename   : msvcp_win.pdb
    File Version          : 10.0.17763.1 (WinBuild.160101.0800)
    Company Name          : Microsoft Corporation
    Product Name          : Microsoft&#174; Windows&#174; Operating System
    Product Version       : 10.0.17763.1

ModLoad: 0000000000e40000 00000000000fc000 C:\Windows\System32\ucrtbase.dll (6.2.17763.1) (-exported- Symbols Loaded)
    Linked PDB Filename   : ucrtbase.pdb
    File Version          : 10.0.17763.1 (WinBuild.160101.0800)
    Company Name          : Microsoft Corporation
    Product Name          : Microsoft&#174; Windows&#174; Operating System
    Product Version       : 10.0.17763.1

ModLoad: 0000000004450000 00000000000a3000 C:\Windows\System32\ADVAPI32.dll (6.2.17763.1) (-exported- Symbols Loaded)
    Linked PDB Filename   : advapi32.pdb
    File Version          : 10.0.17763.345 (WinBuild.160101.0800)
    Company Name          : Microsoft Corporation
    Product Name          : Betriebssystem Microsoft&#174; Windows&#174;
    Product Version       : 10.0.17763.345

ModLoad: 0000000001ce0000 000000000009e000 C:\Windows\System32\msvcrt.dll (7.0.17763.1) (-exported- Symbols Loaded)
    Linked PDB Filename   : msvcrt.pdb
    File Version          : 7.0.17763.1 (WinBuild.160101.0800)
    Company Name          : Microsoft Corporation
    Product Name          : Microsoft&#174; Windows&#174; Operating System
    Product Version       : 7.0.17763.1

ModLoad: 0000000001c40000 000000000009e000 C:\Windows\System32\sechost.dll (6.2.17763.1) (-exported- Symbols Loaded)
    Linked PDB Filename   : sechost.pdb
    File Version          : 10.0.17763.1 (WinBuild.160101.0800)
    Company Name          : Microsoft Corporation
    Product Name          : Microsoft&#174; Windows&#174; Operating System
    Product Version       : 10.0.17763.1

ModLoad: 0000000004420000 000000000002e000 C:\Windows\System32\IMM32.DLL (6.2.17763.1) (-exported- Symbols Loaded)
    Linked PDB Filename   : imm32.pdb
    File Version          : 10.0.17763.1 (WinBuild.160101.0800)
    Company Name          : Microsoft Corporation
    Product Name          : Microsoft&#174; Windows&#174; Operating System
    Product Version       : 10.0.17763.1

ModLoad: 0000000000900000 0000000000011000 C:\Windows\System32\kernel.appcore.dll (6.2.17763.1) (-exported- Symbols Loaded)
    Linked PDB Filename   : Kernel.Appcore.pdb
    File Version          : 10.0.17763.1 (WinBuild.160101.0800)
    Company Name          : Microsoft Corporation
    Product Name          : Microsoft&#174; Windows&#174; Operating System
    Product Version       : 10.0.17763.1

ModLoad: 00000000ff970000 0000000000031000 C:\Windows\SYSTEM32\ntmarta.dll (6.2.17763.1) (-exported- Symbols Loaded)
    Linked PDB Filename   : ntmarta.pdb
    File Version          : 10.0.17763.345 (WinBuild.160101.0800)
    Company Name          : Microsoft Corporation
    Product Name          : Betriebssystem Microsoft&#174; Windows&#174;
    Product Version       : 10.0.17763.345

ModLoad: 00000000f4c70000 00000000001ed000 C:\Windows\SYSTEM32\dbghelp.dll (6.2.17763.1) (-exported- Symbols Loaded)
    Linked PDB Filename   : dbghelp.pdb
    File Version          : 10.0.17763.1 (WinBuild.160101.0800)
    Company Name          : Microsoft Corporation
    Product Name          : Microsoft&#174; Windows&#174; Operating System
    Product Version       : 10.0.17763.1

ModLoad: 00000000fc1a0000 000000000000a000 C:\Windows\SYSTEM32\version.dll (6.2.17763.1) (-exported- Symbols Loaded)
    Linked PDB Filename   : version.pdb
    File Version          : 10.0.17763.1 (WinBuild.160101.0800)
    Company Name          : Microsoft Corporation
    Product Name          : Microsoft&#174; Windows&#174; Operating System
    Product Version       : 10.0.17763.1



*** Dump of the Process Statistics: ***

- I/O Operations Counters -
Read: 51616, Write: 16367, Other 213585

- I/O Transfers Counters -
Read: 361280721, Write: 544727649, Other 355350

- Paged Pool Usage -
QuotaPagedPoolUsage: 288096, QuotaPeakPagedPoolUsage: 288224
QuotaNonPagedPoolUsage: 15360, QuotaPeakNonPagedPoolUsage: 15520

- Virtual Memory Usage -
VirtualSize: 325042176, PeakVirtualSize: 1085247488

- Pagefile Usage -
PagefileUsage: 325042176, PeakPagefileUsage: 452964352

- Working Set Size -
WorkingSetSize: 130752512, PeakWorkingSetSize: 459677696, PageFaultCount: 1334166

*** Dump of thread ID 7968 (state: Initialized): ***

- Information -
Status: Base Priority: Normal, Priority: Normal, , Kernel Time: 0.000000, User Time: 0.000000, Wait Time: 0.000000

- Unhandled Exception Record -
Reason: Access Violation (0xc0000005) at address 0x00000200436F7261 

- Registers -
rax=000000000000003a rbx=00000000a1b56490 rcx=00000000a24b12b0 rdx=00000000a25913e8 rsi=000000000000000b rdi=00000000a24b12b0
r8=000000000000003a r9=0000000000000421 r10=000000002ec539e8 r11=00000000bd15b220 r12=000000002b9b0000 r13=00000000bd15fe20
r14=00000000bd15b980 r15=0000000000409c35 rip=00000000436f7261 rsp=00000000bd15b298 rbp=0000000000000000
cs=0033  ss=002b  ds=002b  es=002b  fs=0053  gs=002b             efl=00010202

- Callstack -
ChildEBP RetAddr  Args to Child
bd15b290 2bdfa20c 00000002 2ec538c0 2ec539e8 2ec3b308 !+0x0 SymFromAddr(): GetLastError = '126'  SymGetModuleInfo(): GetLastError = '126' Address = '436f7261'
bd15b2c0 2bdc793d a1b56490 bd15b360 bd15bb00 2bdb1f9d rosetta_4.07_windows_x86_64!+0x0 SymFromAddr(): GetLastError = '126'  SymGetModuleInfo(): GetLastError = '126' Address = '2bdfa20c'
bd15b2f0 2e7cc388 2f3feee8 bd15fe20 00000000 2bdb1ca5 rosetta_4.07_windows_x86_64!+0x0 SymFromAddr(): GetLastError = '126'  SymGetModuleInfo(): GetLastError = '126' Address = '2bdc793d'
bd15b320 2bdb2420 bd15bff0 a6040ac0 bd15bff0 bd15b928 rosetta_4.07_windows_x86_64!cppdb::statement::empty+0x0 SymFromAddr(): GetLastError = '126'  SymGetModuleInfo(): GetLastError = '126' Address = '2e7cc388'
bd15b390 0494468f 00000000 bd15b910 00000000 2b9b0000 rosetta_4.07_windows_x86_64!+0x0 SymFromAddr(): GetLastError = '126'  SymGetModuleInfo(): GetLastError = '126' Address = '2bdb2420'
bd15b3c0 048a4bef bd15b910 00000000 00000000 2b9b0000 ntdll!__chkstk+0x0 SymFromAddr(): GetLastError = '126'  SymGetModuleInfo(): GetLastError = '126' Address = '0494468f'
bd15baf0 049433fe fffffffe a6043cf0 ba1f09c0 00000000 ntdll!RtlWalkFrameChain+0x0 SymFromAddr(): GetLastError = '126'  SymGetModuleInfo(): GetLastError = '126' Address = '048a4bef'
bd15c0b0 2d49c89c a4bc59a8 a4bc57f0 bd15c288 bd15c2d0 ntdll!KiUserExceptionDispatcher+0x0 SymFromAddr(): GetLastError = '126'  SymGetModuleInfo(): GetLastError = '126' Address = '049433fe'
bd15c0f0 2c4073c6 2ec58cb0 00000000 2ed25460 a4bc57f0 rosetta_4.07_windows_x86_64!cppdb::backend::statements_cache::statements_cache+0x0 SymFromAddr(): GetLastError = '126'  SymGetModuleInfo(): GetLastError = '126' Address = '2d49c89c'
bd15c120 2c50142b c212eaa0 a4bc57f0 2ed25460 a4bc57f0 rosetta_4.07_windows_x86_64!cppdb::atomic_counter::atomic_counter+0x0 SymFromAddr(): GetLastError = '126'  SymGetModuleInfo(): GetLastError = '126' Address = '2c4073c6'
bd15c150 2d49d61b ab1310e0 bd15c280 ad165d60 2bdab9dd rosetta_4.07_windows_x86_64!cppdb::atomic_counter::atomic_counter+0x0 SymFromAddr(): GetLastError = '126'  SymGetModuleInfo(): GetLastError = '126' Address = '2c50142b'
bd15c190 2d49cb3d ac059200 a5efd6f0 fffffffe 00000000 rosetta_4.07_windows_x86_64!cppdb::backend::statements_cache::statements_cache+0x0 SymFromAddr(): GetLastError = '126'  SymGetModuleInfo(): GetLastError = '126' Address = '2d49d61b'
bd15c1e0 2c407327 a4bc57f0 bd15c3b0 ac059200 a5cdcce0 rosetta_4.07_windows_x86_64!cppdb::backend::statements_cache::statements_cache+0x0 SymFromAddr(): GetLastError = '126'  SymGetModuleInfo(): GetLastError = '126' Address = '2d49cb3d'
bd15c210 2c20ce4c a7a110f0 adc65350 fffffffe 00000000 rosetta_4.07_windows_x86_64!cppdb::atomic_counter::atomic_counter+0x0 SymFromAddr(): GetLastError = '126'  SymGetModuleInfo(): GetLastError = '126' Address = '2c407327'
bd15c2a0 2c19f028 bd15c0f0 00000024 00000000 2bda9067 rosetta_4.07_windows_x86_64!cppdb::atomic_counter::get+0x0 SymFromAddr(): GetLastError = '126'  SymGetModuleInfo(): GetLastError = '126' Address = '2c20ce4c'
bd15c460 2c6eafa7 00000000 a7a110f0 00000001 609cbbca rosetta_4.07_windows_x86_64!cppdb::atomic_counter::get+0x0 SymFromAddr(): GetLastError = '126'  SymGetModuleInfo(): GetLastError = '126' Address = '2c19f028'
bd15c4a0 2c6eaed7 bd15c6a0 a7a110f0 bd15c6a0 a5897b20 rosetta_4.07_windows_x86_64!xmlCleanupThreads+0x0 SymFromAddr(): GetLastError = '126'  SymGetModuleInfo(): GetLastError = '126' Address = '2c6eafa7'
bd15c500 2dcf6158 00004876 bd15d290 00004876 2dcf58ed rosetta_4.07_windows_x86_64!xmlCleanupThreads+0x0 SymFromAddr(): GetLastError = '126'  SymGetModuleInfo(): GetLastError = '126' Address = '2c6eaed7'
bd15c560 2dcf5a00 0000000b 0000000f 609cbaca fffffffe rosetta_4.07_windows_x86_64!xmlXIncludeSetFlags+0x0 SymFromAddr(): GetLastError = '126'  SymGetModuleInfo(): GetLastError = '126' Address = '2dcf6158'
bd15c590 2cfafc8b a5860290 00000000 a5860290 00000000 rosetta_4.07_windows_x86_64!xmlXIncludeSetFlags+0x0 SymFromAddr(): GetLastError = '126'  SymGetModuleInfo(): GetLastError = '126' Address = '2dcf5a00'
bd15cae0 2cfad969 00000000 a244b350 a58601e0 bd15cbf0 rosetta_4.07_windows_x86_64!xmlCleanupThreads+0x0 SymFromAddr(): GetLastError = '126'  SymGetModuleInfo(): GetLastError = '126' Address = '2cfafc8b'
bd15ce80 2cef96bd a585f870 bd15d0d0 a585f870 000002fc rosetta_4.07_windows_x86_64!xmlCleanupThreads+0x0 SymFromAddr(): GetLastError = '126'  SymGetModuleInfo(): GetLastError = '126' Address = '2cfad969'
bd15efb0 2cefcb66 bd15f010 a244c1d0 a2196c40 a74cfc70 rosetta_4.07_windows_x86_64!xmlCleanupThreads+0x0 SymFromAddr(): GetLastError = '126'  SymGetModuleInfo(): GetLastError = '126' Address = '2cef96bd'
bd15f1e0 2bdaf388 a2325520 a2325520 a2196c40 a2196c60 rosetta_4.07_windows_x86_64!xmlCleanupThreads+0x0 SymFromAddr(): GetLastError = '126'  SymGetModuleInfo(): GetLastError = '126' Address = '2cefcb66'
bd15fe10 2bdb9c35 00000000 00000000 2ffb4838 00000000 rosetta_4.07_windows_x86_64!+0x0 SymFromAddr(): GetLastError = '126'  SymGetModuleInfo(): GetLastError = '126' Address = '2bdaf388'
bd15fe50 038481f4 00000000 00000000 00000000 00000000 rosetta_4.07_windows_x86_64!+0x0 SymFromAddr(): GetLastError = '126'  SymGetModuleInfo(): GetLastError = '126' Address = '2bdb9c35'
bd15fe80 0490a251 00000000 00000000 00000000 00000000 KERNEL32!BaseThreadInitThunk+0x0 SymFromAddr(): GetLastError = '126'  SymGetModuleInfo(): GetLastError = '126' Address = '038481f4'
bd15ff00 00000000 00000000 00000000 00000000 00000000 ntdll!RtlUserThreadStart+0x0 SymFromAddr(): GetLastError = '126'  SymGetModuleInfo(): GetLastError = '126' Address = '0490a251'

*** Dump of thread ID 32763 (state: Initialized): ***

- Information -
Status: Base Priority: Normal, Priority: Unknown, , Kernel Time: 32.000000, User Time: 0.000000, Wait Time: 2612542976.000000

- Registers -
rax=0000000000000000 rbx=0000000000000000 rcx=0000000000000000 rdx=0000000000000000 rsi=0000000000000000 rdi=0000000000000000
r8=0000000000000000 r9=0000000000000000 r10=0000000000000000 r11=0000000000000000 r12=0000000000000000 r13=0000000000000000
r14=0000000000000000 r15=0000000000000000 rip=0000000000000000 rsp=0000000000000000 rbp=0000000000000000
cs=0000  ss=0000  ds=0000  es=0000  fs=0000  gs=0000             efl=00000000

- Callstack -
ChildEBP RetAddr  Args to Child
(-nosymbols- PC == 0)
00000000 00000000 00000000 00000000 00000000 00000000 !+0x0 

*** Dump of thread ID 30724773 (state: Unknown): ***

- Information -
Status: Base Priority: Normal, Priority: Unknown, , Kernel Time: 17179869184.000000, User Time: 21474963456.000000, Wait Time: 156250.000000

- Registers -
rax=0000000000000000 rbx=0000000000000000 rcx=0000000000000000 rdx=0000000000000000 rsi=0000000000000000 rdi=0000000000000000
r8=0000000000000000 r9=0000000000000000 r10=0000000000000000 r11=0000000000000000 r12=0000000000000000 r13=0000000000000000
r14=0000000000000000 r15=0000000000000000 rip=0000000000000000 rsp=0000000000000000 rbp=0000000000000000
cs=0000  ss=0000  ds=0000  es=0000  fs=0000  gs=0000             efl=00000000

- Callstack -
ChildEBP RetAddr  Args to Child
(-nosymbols- PC == 0)
00000000 00000000 00000000 00000000 00000000 00000000 !+0x0 


*** Debug Message Dump ****


*** Foreground Window Data ***
    Window Name      : 
    Window Class     : 
    Window Process ID: 0
    Window Thread ID : 0

Exiting...

</stderr_txt>
]]>

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Stevie G

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Message 90479 - Posted: 5 Mar 2019, 20:52:05 UTC

I've also had ten tasks reported as "errors while computing" in the past week. It's a real drag when my computer works for 6 to 8 hours on a task, only to have it rejected as an error.

SETI@H is running with no errors.

Asteroids@H has no work at the moment, but was running with no errors when it did.

All the errors are with Rosetta v. 4.07. Rosetta Mini v. 3.78 appears to have no errors.

Why is this happening. It's a P.I.T.A.

Steven Gaber
Oldsmar, FL
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James W

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Message 90482 - Posted: 6 Mar 2019, 1:33:44 UTC

Application version: Rosetta v4.07 windows_intelx86
Device: 1759960, Task: 1060410037, and WU 955290270.
Name: rb_02_28_1385_1532_ab_t000__robetta_IGNORE_THE_REST_04_09_819097_97
Status: Error while computing
Exit status: -529697949 (0xE06D7363) Unknown error code
<core_client_version>7.14.2</core_client_version>
<![CDATA[<message>(unknown error) - exit code -529697949 (0xe06d7363)</message>
command: projects/boinc.bakerlab.org_rosetta/rosetta_4.07_windows_intelx86.exe @rb_02_28_1385_1532_ab_t000__robetta_FLAGS -in::file::fasta t000_.fasta -psipred_ss2 t000_.spider3_ss2 -kill_hairpins t000_.nobuformat.spider3_ss2 -abinitio::use_filters true -in:file:boinc_wu_zip rb_02_28_1385_1532_ab_t000__robetta.zip -frag3 rb_02_28_1385_1532_ab_t000__robetta.200.3mers.index.gz -fragA rb_02_28_1385_1532_ab_t000__robetta.200.9mers.index.gz -fragB rb_02_28_1385_1532_ab_t000__robetta.200.4mers.index.gz -nstruct 10000 -cpu_run_time 28800 -watchdog -boinc:max_nstruct 600 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 1022872

Unhandled Exception Detected...
- Unhandled Exception Record -
Reason: Out Of Memory (C++ Exception) (0xe06d7363) at address 0x75BBC5AF
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James W

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Message 90483 - Posted: 6 Mar 2019, 1:45:13 UTC

Application version: Rosetta v4.07 windows_intelx86
Device: 1759960, Task: 1060410093, and WU 955290303.
Name: rb_02_28_1385_1532_ab_t000__robetta_IGNORE_THE_REST_07_11_819097_82
Status: Error while computing
Exit status: -1073741819 (0xC0000005) STATUS_ACCESS_VIOLATION
<core_client_version>7.14.2</core_client_version>
<![CDATA[<message>(unknown error) - exit code -1073741819 (0xc0000005)</message>
command: projects/boinc.bakerlab.org_rosetta/rosetta_4.07_windows_intelx86.exe @rb_02_28_1385_1532_ab_t000__robetta_FLAGS -in::file::fasta t000_.fasta -psipred_ss2 t000_.spider3_ss2 -kill_hairpins t000_.nobuformat.spider3_ss2 -abinitio::use_filters true -in:file:boinc_wu_zip rb_02_28_1385_1532_ab_t000__robetta.zip -frag3 rb_02_28_1385_1532_ab_t000__robetta.200.3mers.index.gz -fragA rb_02_28_1385_1532_ab_t000__robetta.200.11mers.index.gz -fragB rb_02_28_1385_1532_ab_t000__robetta.200.7mers.index.gz -nstruct 10000 -cpu_run_time 28800 -watchdog -boinc:max_nstruct 600 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 1017245

Unhandled Exception Detected...
- Unhandled Exception Record -
Reason: Out Of Memory (C++ Exception) (0xe06d7363) at address 0x75BBC5AF
Engaging BOINC Windows Runtime Debugger...

Unhandled Exception Detected...
- Unhandled Exception Record -
Reason: Access Violation (0xc0000005) at address 0x02897142 read attempt to address 0x00000044
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Message 90485 - Posted: 6 Mar 2019, 7:59:59 UTC - in response to Message 90479.  

All the errors are with Rosetta v. 4.07. Rosetta Mini v. 3.78 appears to have no errors.

Same here.
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Trotador

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Message 90491 - Posted: 6 Mar 2019, 17:52:25 UTC

The quantity of Validation error units is also increasing in wu's with names starting by "6mers" and "ClpP_peptoids".
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rjs5

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Message 90492 - Posted: 6 Mar 2019, 18:05:29 UTC - in response to Message 90491.  

The quantity of Validation error units is also increasing in wu's with names starting by "6mers" and "ClpP_peptoids".



I had several that ran about 4000 seconds and errored out. They all had tried 600 decoys.

https://boinc.bakerlab.org/rosetta/result.php?resultid=1061038710

command: ../../projects/boinc.bakerlab.org_rosetta/rosetta_4.07_i686-pc-linux-gnu @ClpP_peptoids_1_npropyl_7mer_0001_511_0001.flags -nstruct 10000 -cpu_run_time 28800 -watchdog -boinc:max_nstruct 600 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2973984
Starting watchdog...
Watchdog active.
Starting watchdog...
Watchdog active.
======================================================
DONE :: 1 starting structures 6360.72 cpu seconds
This process generated 600 decoys from 600 attempts
======================================================
BOINC :: WS_max 0

BOINC :: Watchdog shutting down...
12:23:32 (21790): called boinc_finish(0)[url][/url][url][/url]
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Stevie G

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Message 90493 - Posted: 6 Mar 2019, 22:21:59 UTC

Rosetta uses a lot of computer time and resources, too much to go to waste on "errors while computing."

If this continues for another week, I will suspend Rosetta and get no new tasks until somebody tells me the problem is solved.

Steven Gaber
Oldsmar, FL
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Message 90496 - Posted: 8 Mar 2019, 16:26:07 UTC

I'll look into this.
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Stevie G

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Message 90501 - Posted: 9 Mar 2019, 17:06:35 UTC - in response to Message 90496.  

I'll look into this.


OK, thank you. I now have 11 "errors while computing," only one of which is v3.78. The others are v4.07.

Eight completed and validated. six v4.07 and two v3.78.

This is not good.

Steven Gaber
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Jim1348

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Message 90502 - Posted: 9 Mar 2019, 17:20:46 UTC - in response to Message 90491.  

The quantity of Validation error units is also increasing in wu's with names starting by "6mers" and "ClpP_peptoids".

I just got my first one on a "7mernpr2". They are expanding.
https://boinc.bakerlab.org/rosetta/result.php?resultid=1061652523
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Message boards : Number crunching : Rosetta 4.0+



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