-silent_gz -mute all -abinitio::fastrelax -abinitio::rg_reweight 0.5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -out:file:silent_struct_type binary -score:weights ref2015_cart.wts -relax::dualspace -relax::minimize_bond_angles -optimization::default_max_cycles 200 -chemical:exclude_patches LowerDNA UpperDNA Cterm_amidation SpecialRotamer VirtualBB ShoveBB VirtualDNAPhosphate VirtualNTerm CTermConnect sc_orbitals pro_hydroxylated_case1 pro_hydroxylated_case2 ser_phosphorylated thr_phosphorylated tyr_phosphorylated tyr_sulfated lys_dimethylated lys_monomethylated lys_trimethylated lys_acetylated glu_carboxylated cys_acetylated tyr_diiodinated N_acetylated C_methylamidated MethylatedProteinCterm -psipred_ss2 t000_.spider3_ss2 -kill_hairpins t000_.nobuformat.spider3_ss2 -abinitio::increase_cycles 10 -abinitio::use_filters true