-run:protocol jd2_scripting -in::file::boinc_wu_zip HH2024_1GHQ_xdx_xaa_beta16_A_input_files.zip -database database -nstruct 2 -parser:protocol relax_interface_of_chainA.xml -parser:script_vars wts=beta16.nostab-refit_cart.wts relaxscript=MonomerDesign2019 -in:file:silent xaa -in:file:silent_struct_type binary -score:weights beta16.nostab-refit_cart.wts -crystal_refine true -overwrite -in:file:native 1GHQ_bound_native.pdb -out:file:renumber_pdb true -silent_read_through_errors -silent_gz -out:file:silent_struct_type binary -out:file:silent default.out -out:file:scorefile default.sc -mute all # -score::unmodifypot true -score::fa_Hatr true -score::hbond_new_sp3_acc true -score::elec_sigmoidal_die true -dna::specificity::lk_ball_water_fade 1.0 -dna::specificity::lk_ball_for_bb true -dna::specificity::lk_ball_bridge_angle_widthscale 2.8 -corrections::shapovalov_lib_fixes_enable true -corrections::shapovalov_lib::shap_dun10_enable false -corrections::shapovalov_lib::shap_p_aa_pp_smooth_level 1 -corrections::score::rama_pp_map scoring/score_functions/rama/fd_beta_nov2016 -corrections::score::dun10_dir rotamer/beta_nov2016 -corrections::score::bbdep_omega true -score::elec_representative_cp_flip true -score::bonded_params_dir scoring/score_functions/bondlength_bondangle -chemical::set_atom_properties fa_standard:NtrR:LK_DGFREE:-4.9280 -chemical::set_atom_properties fa_standard:aroC:LK_DGFREE:2.2228 -chemical::set_atom_properties fa_standard:CH2:LK_DGFREE:-2.5518 -chemical::set_atom_properties fa_standard:Nhis:LK_DGFREE:-9.7253 -chemical::set_atom_properties fa_standard:Ntrp:LK_DGFREE:-10.6448 -chemical::set_atom_properties fa_standard:CH3:LK_DGFREE:7.7272 -chemical::set_atom_properties fa_standard:Npro:LK_DGFREE:-1.5111 -chemical::set_atom_properties fa_standard:OOC:LK_DGFREE:-10.2082 -chemical::set_atom_properties fa_standard:CH1:LK_DGFREE:-6.4922 -chemical::set_atom_properties fa_standard:S:LK_DGFREE:-4.8980 -chemical::set_atom_properties fa_standard:Narg:LK_DGFREE:-8.6960 -chemical::set_atom_properties fa_standard:SH1:LK_DGFREE:2.0795 -chemical::set_atom_properties fa_standard:CAbb:LK_DGFREE:4.4494 -chemical::set_atom_properties fa_standard:CNH2:LK_DGFREE:3.7033 -chemical::set_atom_properties fa_standard:OH:LK_DGFREE:-5.4606 -chemical::set_atom_properties fa_standard:OW:LK_DGFREE:-5.4606 -chemical::set_atom_properties fa_standard:CObb:LK_DGFREE:3.5790 -chemical::set_atom_properties fa_standard:CH0:LK_DGFREE:1.2487 -chemical::set_atom_properties fa_standard:NH2O:LK_DGFREE:-7.6667 -chemical::set_atom_properties fa_standard:OCbb:LK_DGFREE:-9.5292 -chemical::set_atom_properties fa_standard:Nbb:LK_DGFREE:-12.8467 -chemical::set_atom_properties fa_standard:ONH2:LK_DGFREE:-5.0350 -chemical::set_atom_properties fa_standard:COO:LK_DGFREE:-2.5088 -chemical::set_atom_properties fa_standard:Nlys:LK_DGFREE:-18.7433 -chemical:set_atomic_charge fa_standard:GLU:CB:-0.16925 -chemical:set_atomic_charge 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fa_standard:ILE:CG1:-0.24310 -chemical:set_atomic_charge fa_standard:ILE:CG2:-0.36465 -chemical:set_atomic_charge fa_standard:ILE:CD1:-0.36465 -chemical:set_atomic_charge fa_standard:ILE:HB:0.12155 -chemical:set_atomic_charge fa_standard:ILE:1HG2:0.12155 -chemical:set_atomic_charge fa_standard:ILE:2HG2:0.12155 -chemical:set_atomic_charge fa_standard:ILE:3HG2:0.12155 -chemical:set_atomic_charge fa_standard:ILE:1HG1:0.12155 -chemical:set_atomic_charge fa_standard:ILE:2HG1:0.12155 -chemical:set_atomic_charge fa_standard:ILE:1HD1:0.12155 -chemical:set_atomic_charge fa_standard:ILE:2HD1:0.12155 -chemical:set_atomic_charge fa_standard:ILE:3HD1:0.12155 -chemical:set_atomic_charge fa_standard:LEU:CB:-0.24310 -chemical:set_atomic_charge fa_standard:LEU:CG:-0.12155 -chemical:set_atomic_charge fa_standard:LEU:CD1:-0.36465 -chemical:set_atomic_charge fa_standard:LEU:CD2:-0.36465 -chemical:set_atomic_charge fa_standard:LEU:1HB:0.12155 -chemical:set_atomic_charge fa_standard:LEU:2HB:0.12155 -chemical:set_atomic_charge fa_standard:LEU:HG:0.12155 -chemical:set_atomic_charge fa_standard:LEU:1HD1:0.12155 -chemical:set_atomic_charge fa_standard:LEU:2HD1:0.12155 -chemical:set_atomic_charge fa_standard:LEU:3HD1:0.12155 -chemical:set_atomic_charge fa_standard:LEU:1HD2:0.12155 -chemical:set_atomic_charge fa_standard:LEU:2HD2:0.12155 -chemical:set_atomic_charge fa_standard:LEU:3HD2:0.12155 -chemical:set_atomic_charge fa_standard:MET:CB:-0.24310 -chemical:set_atomic_charge fa_standard:MET:CG:-0.18908 -chemical:set_atomic_charge fa_standard:MET:SD:-0.12155 -chemical:set_atomic_charge fa_standard:MET:CE:-0.29712 -chemical:set_atomic_charge fa_standard:MET:1HB:0.12155 -chemical:set_atomic_charge fa_standard:MET:2HB:0.12155 -chemical:set_atomic_charge fa_standard:MET:1HG:0.12155 -chemical:set_atomic_charge fa_standard:MET:2HG:0.12155 -chemical:set_atomic_charge fa_standard:MET:1HE:0.12155 -chemical:set_atomic_charge fa_standard:MET:2HE:0.12155 -chemical:set_atomic_charge 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