-cyclic_peptide:sequence_file seq.txt -symmetric_gly_tables true -score:weights ref2015.wts -in:file:native native.pdb -in:file:fullatom -cyclic_peptide:genkic_closure_attempts 1000 -cyclic_peptide:genkic_min_solution_count 1 -cyclic_peptide:min_genkic_hbonds 1 -cyclic_peptide:min_final_hbonds 1 -cyclic_peptide:fast_relax_rounds 20 -cyclic_peptide:rama_cutoff 10.0 -cyclic_peptide:checkpoint_job_identifier check -ex1 -ex2 -extrachi_cutoff 5 -mute all -cyclic_peptide:checkpoint_file 14res_af_hallucinated_59_8_best_check.txt -out:file:silent default.out -in:file:boinc_wu_zip 14res_af_hallucinated_59_8_best.zip -database minirosetta_database -silent_gz -run:protocol simple_cycpep_predict -cyclic_peptide:n_methyl_positions #Uncomment the following to try disulfide permutations: #-cyclic_peptide:disulf_cutoff_prerelax 1000 #-cyclic_peptide:require_disulfides true #Uncomment the following to set dihedrals: #-cyclic_peptide:user_set_alpha_dihedrals 2 -61 -41 180 #-cyclic_peptide:user_set_alpha_dihedral_perturbation 5.0