-in:file:s BamA_darostub3_rdy.pdb -parser:protocol BmA_10v4_darostub3_rdy_jb10v4.xml -in:file:fullatom -beta -out:file:silent_struct_type binary -mute all -out:file:silent default.out -in:file:boinc_wu_zip BmA_10v4_darostub3_rdy_jb10v4.zip -database minirosetta_database -silent_gz -run:protocol jd2_scripting