http://boinc.bakerlab.org/rosetta/ BOINC project Rosetta@home: Main page News University of Washington Wed, 25 Jun 2008 22:49:27 GMT en-us http://boinc.bakerlab.org/rosetta/rss_image.gif http://boinc.bakerlab.org/rosetta/ http://boinc.bakerlab.org/rosetta/all_news.php#216 http://boinc.bakerlab.org/rosetta/all_news.php#216 The rosetta application has been updated to version 5.98. This version includes a bug fix for the stalled client issue. Please report problems in this thread. Wed, 25 Jun 2008 07:00:00 GMT http://boinc.bakerlab.org/rosetta/all_news.php#215 http://boinc.bakerlab.org/rosetta/all_news.php#215 As many of you have likely noticed, our throughput has decreased significantly in the last week. This was due to a couple bad batches that were sent out last week for CASP8 that were not caught by our Ralph tests. The issue was rather insidious in that the tasks would cause some clients to stall and sit idle so we were not immediately aware of the problem. The task names started with "t405". If you have any of these tasks on your client, PLEASE ABORT THEM. These batches have been cancelled. We are currently testing a fix on Ralph and an update will soon be posted. Sorry for any inconvenience. Tue, 24 Jun 2008 07:00:00 GMT http://boinc.bakerlab.org/rosetta/all_news.php#214 http://boinc.bakerlab.org/rosetta/all_news.php#214 The minirosetta application has been updated to version 1.28. This version contains a fix for the graphics application and jumping and loop modeling protocols. Please report bugs in this thread. Tue, 10 Jun 2008 07:00:00 GMT http://boinc.bakerlab.org/rosetta/all_news.php#213 http://boinc.bakerlab.org/rosetta/all_news.php#213 The minirosetta application has been updated to version 1.25. This version contains a fix for a file formatting problem that was causing certain jobs running abinitio folding to fail. Please report bugs in this thread. Sat, 24 May 2008 07:00:00 GMT http://boinc.bakerlab.org/rosetta/all_news.php#212 http://boinc.bakerlab.org/rosetta/all_news.php#212 The minirosetta application has been updated to version 1.24. This version contains a fix for a memory leak that was causing tasks with long run times to fail. Please report bugs in this thread. Wed, 21 May 2008 07:00:00 GMT http://boinc.bakerlab.org/rosetta/all_news.php#211 http://boinc.bakerlab.org/rosetta/all_news.php#211 CASP8 is ramping up with a handful of targets released last week, and many more expected this week. The reason you haven't seen many CASP8 work units as we are making a final benchmarking of all the new structure prediction protocols we have developed over the past two years in the new miniRosetta code framework. The testing is on CASP7 targets--we want to determine which of our new methods are best before going all out on the CASP8 targets (yes, we would like to have completed the benchmarking before casp8 started, but there has been so much to do!). the testing should be complete monday and tuesday, and based on these results we will be sending out primarly casp8 work units next week using the approaches the tests currently running show are most successful. I can't emphasize enough how critical all of your contributions are to our efforts to improve protein structure prediction methods! we have had many ideas on potential improvements which we have implemented, but the only way to know whether we are actually getting closer to the truth is to do rigorous testing (the casp7 targets for which we now know the structures are a perfect test set), and this would quite simply be impossible without your contributions! -- David Baker from DB's Journal Wed, 14 May 2008 07:00:00 GMT http://boinc.bakerlab.org/rosetta/all_news.php#210 http://boinc.bakerlab.org/rosetta/all_news.php#210 The minirosetta application has been updated to version 1.19. This version introduces several bugfixes for our CASP8 abinitio and template-based modeling protocols. We'll be testing small batches of workunits this evening and tomorrow morning. For details, see this thread, and please report bugs in this thread. Mon, 05 May 2008 07:00:00 GMT http://boinc.bakerlab.org/rosetta/all_news.php#209 http://boinc.bakerlab.org/rosetta/all_news.php#209 The minirosetta application has been updated to version 1.15. This version introduces an improved method for modeling larger RNA molecules. For details, see this thread, and please report bugs in this thread. Wed, 23 Apr 2008 07:00:00 GMT http://boinc.bakerlab.org/rosetta/all_news.php#208 http://boinc.bakerlab.org/rosetta/all_news.php#208 Rosetta has been updated to version 5.96. This version introduces an improved method for modeling larger RNA molecules. For details, see this thread. Thu, 13 Mar 2008 07:00:00 GMT