Minirosetta 3.48

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Profile David E K
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Message 76117 - Posted: 10 Oct 2013, 23:39:29 UTC

Minirosetta has been updated to version 3.48. This update includes a number of bug fixes in our hybridize protocol, a new rotamer based centroid fragment sampling protocol, and also an improved energy function. Please post issues/bugs here.
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Killersocke@rosetta

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Message 76141 - Posted: 21 Oct 2013, 23:22:32 UTC

Calculation Error in File
21.10.2013 20:54:56 | rosetta@home | Output file endo_ae__Soc368.015_SAVE_ALL_OUT_IGNORE_THE_REST_95920_691_0_0 for task endo_ae__Soc368.015_SAVE_ALL_OUT_IGNORE_THE_REST_95920_691_0 absent

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Profile [VENETO] boboviz

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Message 76151 - Posted: 25 Oct 2013, 19:06:30 UTC

Now \"endo_ac\" screensaver is ok!! :-)
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Profile [VENETO] boboviz

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Message 76172 - Posted: 6 Nov 2013, 8:36:20 UTC

This new version seems to be very stable.
News about scientific side of the app? Run ok?
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Profile Greg_BE
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Message 76200 - Posted: 21 Nov 2013, 3:03:24 UTC

Task ID 616996009
Name r769_nohelix1_1LW-6HA-3LX-11HA-2LX_0016_0319_0044_0001_1221_fold_SAVE_ALL_OUT_104983_5591_0

http://boinc.bakerlab.org/result.php?resultid=616996009


This task died before it had a chance to start.

<core_client_version>7.2.28</core_client_version>
<![CDATA[
<message>
Maximum elapsed time exceeded
</message>

No firewall messages as the partition for all Boinc programs is excluded.
So something is buggy in the software.
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Profile Tom Zolotor

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Message 76210 - Posted: 23 Nov 2013, 17:25:35 UTC

Rosetta keeps stopping doing work every few seconds. Plz, fix this since the update.

Tom Zolotor
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Profile dcdc

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Message 76211 - Posted: 23 Nov 2013, 17:40:00 UTC - in response to Message 76210.  

Rosetta keeps stopping doing work every few seconds. Plz, fix this since the update.

Tom Zolotor

Are you sure the problem started when Rosetta was updated at the start of October?

Do you have BOINC set to do work when the computer is in use, or have you unchecked \"leave applications in memory when suspended\"?

I doubt it\'s a BOINC issue, but 7.2.28 is the stable version so you could try updating to that too.

D
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Sid Celery

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Message 76291 - Posted: 16 Dec 2013, 0:41:52 UTC

I don\'t usually post complaints about credit scores, but this particular one seems different to others:

31_input_0001_no_lig_fragments_fold_SAVE_ALL_OUT_108256_3302_0

======================================================
DONE :: 1 starting structures 28555.7 cpu seconds
This process generated 24 decoys from 24 attempts
======================================================

This part\'s fine, but another one comes up later:

======================================================
DONE :: 1 starting structures 28237 cpu seconds
This process generated 1 decoys from 1 attempts
======================================================

Then

Validate state Valid
Claimed credit 180.538587796693
Granted credit 6.80219874455716
application version 3.48

It seems to have only awarded for the later 1 decoy and not for the earlier 24 decoys.

I can\'t say if there was some interruption in the job run, but it starts initialising \"2013-12-11 9:23:19\" and then second time around \"2013-12-15 5:51: 9\".

I did return from a few days away to find my system had hung and needing a reboot, but don\'t get why it seemed to report fully the first time round, then run and report a second time. Any ideas?
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cnick6

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Message 76300 - Posted: 19 Dec 2013, 19:10:00 UTC

Crash dump with this result: http://boinc.bakerlab.org/rosetta/result.php?resultid=624166808
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Profile [VENETO] boboviz

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Message 76318 - Posted: 1 Jan 2014, 9:49:18 UTC

627055893
This wu restart every 20/30 seconds and, at the end, this error:

ERROR: Cannot open PDB file \"y042.pdb.gz\"
ERROR:: Exit from: ..\\..\\..\\src\\core\\import_pose\\import_pose.cc line: 218
[2013-12-31 18:35:12:] :: BOINC:: Initializing ... ok.
[2013-12-31 18:35:12:] :: BOINC :: boinc_init()
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cnick6

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Message 76375 - Posted: 21 Jan 2014, 22:21:27 UTC

Another crash:

http://boinc.bakerlab.org/result.php?resultid=631776446

Do you guys care about these? I\'m seeing a few assertions with my results as well...
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Profile [VENETO] boboviz

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Message 76423 - Posted: 12 Feb 2014, 20:47:04 UTC

638287613
638287644

Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_b14204d.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_V1_dock4_S_00001_0000895_0_0001.AB_DkTx_part1.model3.re_chain_060_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
error - tag names do not match! (Possibly due to unclosed tag.) stage2 != ddg_score
# cpu_run_time_pref: 7200

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P . P . L .
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Message 76427 - Posted: 14 Feb 2014, 6:34:36 UTC

Getting a lot of these tasks erring out with the same error.

V1_dock4_S_00001_0000525_0_0001.AB_DkTx_part1.model2.re_chain_180_SAVE_ALL_OUT_IGNORE_THE_REST_138660_2_1


error - tag names do not match! (Possibly due to unclosed tag.) stage2 != ddg_score



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svincent

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Message 76435 - Posted: 16 Feb 2014, 17:53:46 UTC

Task 638918818 (ActCys_native_1iu8_idealize_y008_010_141286_3_0) failed

Watchdog active.
Starting work on structure: _00001

ERROR: [ERROR] invalid kill type for kill_hairpins. ANTI or PARA, is required.
ERROR:: Exit from: src/core/scoring/SS_Killhairpins_Info.cc line: 379
std::cerr: Exception was thrown:


[ERROR] EXCN_utility_exit has been thrown from: src/core/scoring/SS_Killhairpins_Info.cc line: 379
ERROR: [ERROR] invalid kill type for kill_hairpins. ANTI or PARA, is required.


</stderr_txt>
]]>
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Jesse Viviano

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Message 76500 - Posted: 2 Mar 2014, 3:25:07 UTC

Work unit 583729340 crashed on both computers it ran on including mine. It was running Minirosetta 3.48 on both computers.
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Message boards : Number crunching : Minirosetta 3.48



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