Rosetta@Home Version 3.22

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cmiles

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Message 72291 - Posted: 13 Feb 2012, 18:43:17 UTC

Rosetta@Home has been updated to version 3.22. If you encounter any problems, please let us know. Thank you for your continued support.
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Rocco Moretti

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Message 72293 - Posted: 13 Feb 2012, 18:51:03 UTC

Among a number of minor improvements, version 3.22 adds support for additional protocols used in comparative modeling.
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BarryAZ

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Message 72294 - Posted: 13 Feb 2012, 20:33:11 UTC - in response to Message 72293.  

Not sure if it was the update -- but I'm having upload and reporting problems with workunits in the past half hour (noon PST)

Among a number of minor improvements, version 3.22 adds support for additional protocols used in comparative modeling.

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Mad_Max

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Message 72295 - Posted: 13 Feb 2012, 20:45:34 UTC

Same here.
Uploads to server 128.95.160.143 fails.
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TD Nickell
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Message 72297 - Posted: 13 Feb 2012, 22:02:24 UTC

Work Units will not upload!
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BarryAZ

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Message 72301 - Posted: 14 Feb 2012, 3:57:47 UTC - in response to Message 72297.  

They are now.

Work Units will not upload!


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Message 72320 - Posted: 16 Feb 2012, 9:56:37 UTC

Compute error for task CASP9_ac_benchmark_hybridization_run04_T0570_SAVE_ALL_OUT_IGNORE_THE_REST_39284_424, at least on my machine, the wingman could complete it.

The task also didn't checkpoint for me within the first two hours, not sure about if it did after that. I'm running ATM another CASP9_ac_benchmark_hybridization* task, didn't checkpoint after two hours CPU-time as well.

Here the stderr in case it helps:

============================================================
<core_client_version>6.12.34</core_client_version>
<![CDATA[
<message>
- exit code -1073741819 (0xc0000005)
</message>
<stderr_txt>
[2012- 2-15 16:17:54:] :: BOINC:: Initializing ... ok.
[2012- 2-15 16:17:54:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev47343.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_CASP9_ac_benchmark_hybridization_run04_T0570_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
# cpu_run_time_pref: 86400


Unhandled Exception Detected...

- Unhandled Exception Record -
Reason: Access Violation (0xc0000005) at address 0x00E6ACE0 read attempt to address 0x1AB5F000

Engaging BOINC Windows Runtime Debugger...



********************


BOINC Windows Runtime Debugger Version 6.5.0


Dump Timestamp : 02/15/12 19:34:32
Install Directory : C:ProgrammeBOINC
Data Directory : C:Dokumente und EinstellungenAll UsersAnwendungsdatenBOINC
Project Symstore : https://boinc.bakerlab.org/rosetta/symstore
Loaded Library : C:ProgrammeBOINC\dbghelp.dll
Loaded Library : C:ProgrammeBOINC\symsrv.dll
Loaded Library : C:ProgrammeBOINC\srcsrv.dll
LoadLibraryA( C:ProgrammeBOINC\version.dll ): GetLastError = 126
Loaded Library : version.dll
Debugger Engine : 4.0.5.0
Symbol Search Path: C:Dokumente und EinstellungenAll UsersAnwendungsdatenBOINCslots5;C:Dokumente und EinstellungenAll UsersAnwendungsdatenBOINCprojectsboinc.bakerlab.org_rosetta;srv*C:Dokumente und EinstellungenAll UsersAnwendungsdatenBOINCprojectsboinc.bakerlab.org_rosettasymbols*http://msdl.microsoft.com/download/symbols;srv*C:Dokumente und EinstellungenAll UsersAnwendungsdatenBOINCprojectsboinc.bakerlab.org_rosettasymbols*https://boinc.bakerlab.org/rosetta/symstore;srv*C:Dokumente und EinstellungenAll UsersAnwendungsdatenBOINCprojectsboinc.bakerlab.org_rosettasymbols*http://boinc.berkeley.edu/symstore


ModLoad: 00400000 011fd000 C:Dokumente und EinstellungenAll UsersAnwendungsdatenBOINCprojectsboinc.bakerlab.org_rosettaminirosetta_3.22_windows_intelx86.exe (-exported- Symbols Loaded)
Linked PDB Filename : D:boinc_buildminirosetta_beta_3.22rosetta_sourceideVisualStudioBoincReleaseminirosetta_beta_3.22_windows_intelx86.pdb

ModLoad: 7c910000 000b9000 C:WINDOWSsystem32ntdll.dll (5.1.2600.6055) (PDB Symbols Loaded)
Linked PDB Filename : ntdll.pdb
File Version : 5.1.2600.6055 (xpsp_sp3_gdr.101209-1647)
Company Name : Microsoft Corporation
Product Name : Betriebssystem Microsoft&#174; Windows&#174;
Product Version : 5.1.2600.6055

ModLoad: 7c800000 00108000 C:WINDOWSsystem32kernel32.dll (5.1.2600.5781) (PDB Symbols Loaded)
Linked PDB Filename : kernel32.pdb
File Version : 5.1.2600.5781 (xpsp_sp3_gdr.090321-1317)
Company Name : Microsoft Corporation
Product Name : Betriebssystem Microsoft&#174; Windows&#174;
Product Version : 5.1.2600.5781

ModLoad: 64d00000 00034000 C:ProgrammeAVAST SoftwareAvastsnxhk.dll (6.0.1367.0) (-exported- Symbols Loaded)
Linked PDB Filename : e:srcBUILDSReleasex86snxhk.pdb
File Version : 6.0.1367.0
Company Name : AVAST Software
Product Name : avast! Antivirus
Product Version : 6.0.1367.0

ModLoad: 71a10000 00017000 C:WINDOWSsystem32WS2_32.dll (5.1.2600.5512) (PDB Symbols Loaded)
Linked PDB Filename : ws2_32.pdb
File Version : 5.1.2600.5512 (xpsp.080413-0852)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 5.1.2600.5512

ModLoad: 77da0000 000aa000 C:WINDOWSsystem32ADVAPI32.dll (5.1.2600.5755) (PDB Symbols Loaded)
Linked PDB Filename : advapi32.pdb
File Version : 5.1.2600.5755 (xpsp_sp3_gdr.090206-1234)
Company Name : Microsoft Corporation
Product Name : Betriebssystem Microsoft&#174; Windows&#174;
Product Version : 5.1.2600.5755

ModLoad: 77e50000 00093000 C:WINDOWSsystem32RPCRT4.dll (5.1.2600.6022) (PDB Symbols Loaded)
Linked PDB Filename : rpcrt4.pdb
File Version : 5.1.2600.6022 (xpsp_sp3_gdr.100813-1643)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 5.1.2600.6022

ModLoad: 77fc0000 00011000 C:WINDOWSsystem32Secur32.dll (5.1.2600.5834) (PDB Symbols Loaded)
Linked PDB Filename : secur32.pdb
File Version : 5.1.2600.5834 (xpsp_sp3_gdr.090624-1305)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 5.1.2600.5834

ModLoad: 77be0000 00058000 C:WINDOWSsystem32msvcrt.dll (7.0.2600.5512) (PDB Symbols Loaded)
Linked PDB Filename : msvcrt.pdb
File Version : 7.0.2600.5512 (xpsp.080413-2111)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 7.0.2600.5512

ModLoad: 71a00000 00008000 C:WINDOWSsystem32WS2HELP.dll (5.1.2600.5512) (PDB Symbols Loaded)
Linked PDB Filename : ws2help.pdb
File Version : 5.1.2600.5512 (xpsp.080413-0852)
Company Name : Microsoft Corporation
Product Name : Betriebssystem Microsoft&#174; Windows&#174;
Product Version : 5.1.2600.5512

ModLoad: 7e360000 00091000 C:WINDOWSsystem32USER32.dll (5.1.2600.5512) (PDB Symbols Loaded)
Linked PDB Filename : user32.pdb
File Version : 5.1.2600.5512 (xpsp.080413-2105)
Company Name : Microsoft Corporation
Product Name : Betriebssystem Microsoft&#174; Windows&#174;
Product Version : 5.1.2600.5512

ModLoad: 77ef0000 00049000 C:WINDOWSsystem32GDI32.dll (5.1.2600.5698) (PDB Symbols Loaded)
Linked PDB Filename : gdi32.pdb
File Version : 5.1.2600.5698 (xpsp_sp3_gdr.081022-1932)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 5.1.2600.5698

ModLoad: 76330000 0001d000 C:WINDOWSsystem32IMM32.DLL (5.1.2600.5512) (PDB Symbols Loaded)
Linked PDB Filename : imm32.pdb
File Version : 5.1.2600.5512 (xpsp.080413-2105)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 5.1.2600.5512

ModLoad: 77660000 00021000 C:WINDOWSsystem32NTMARTA.DLL (5.1.2600.5512) (PDB Symbols Loaded)
Linked PDB Filename : ntmarta.pdb
File Version : 5.1.2600.5512 (xpsp.080413-2113)
Company Name : Microsoft Corporation
Product Name : Betriebssystem Microsoft&#174; Windows&#174;
Product Version : 5.1.2600.5512

ModLoad: 774b0000 0013e000 C:WINDOWSsystem32ole32.dll (5.1.2600.6168) (PDB Symbols Loaded)
Linked PDB Filename : ole32.pdb
File Version : 5.1.2600.6168 (xpsp_sp3_gdr.111101-1829)
Company Name : Microsoft Corporation
Product Name : Betriebssystem Microsoft&#174; Windows&#174;
Product Version : 5.1.2600.6168

ModLoad: 71b70000 00013000 C:WINDOWSsystem32SAMLIB.dll (5.1.2600.5512) (PDB Symbols Loaded)
Linked PDB Filename : samlib.pdb
File Version : 5.1.2600.5512 (xpsp.080413-2113)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 5.1.2600.5512

ModLoad: 76f20000 0002d000 C:WINDOWSsystem32WLDAP32.dll (5.1.2600.5512) (PDB Symbols Loaded)
Linked PDB Filename : wldap32.pdb
File Version : 5.1.2600.5512 (xpsp.080413-2113)
Company Name : Microsoft Corporation
Product Name : Betriebssystem Microsoft&#174; Windows&#174;
Product Version : 5.1.2600.5512

ModLoad: 19a20000 00115000 C:ProgrammeBOINCdbghelp.dll (6.8.4.0) (PDB Symbols Loaded)
Linked PDB Filename : dbghelp.pdb
File Version : 6.8.0004.0 (debuggers(dbg).070515-1751)
Company Name : Microsoft Corporation
Product Name : Debugging Tools for Windows(R)
Product Version : 6.8.0004.0

ModLoad: 0e650000 00048000 C:ProgrammeBOINCsymsrv.dll (6.8.4.0) (PDB Symbols Loaded)
Linked PDB Filename : symsrv.pdb
File Version : 6.8.0004.0 (debuggers(dbg).070515-1751)
Company Name : Microsoft Corporation
Product Name : Debugging Tools for Windows(R)
Product Version : 6.8.0004.0

ModLoad: 0e6a0000 0003b000 C:ProgrammeBOINCsrcsrv.dll (6.8.4.0) (PDB Symbols Loaded)
Linked PDB Filename : srcsrv.pdb
File Version : 6.8.0004.0 (debuggers(dbg).070515-1751)
Company Name : Microsoft Corporation
Product Name : Debugging Tools for Windows(R)
Product Version : 6.8.0004.0

ModLoad: 77bd0000 00008000 C:WINDOWSsystem32version.dll (5.1.2600.5512) (PDB Symbols Loaded)
Linked PDB Filename : version.pdb
File Version : 5.1.2600.5512 (xpsp.080413-2105)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 5.1.2600.5512



*** Dump of the Process Statistics: ***

- I/O Operations Counters -
Read: 14616, Write: 0, Other 5294

- I/O Transfers Counters -
Read: 0, Write: 145289, Other 0

- Paged Pool Usage -
QuotaPagedPoolUsage: 107076, QuotaPeakPagedPoolUsage: 107076
QuotaNonPagedPoolUsage: 4056, QuotaPeakNonPagedPoolUsage: 4360

- Virtual Memory Usage -
VirtualSize: 528216064, PeakVirtualSize: 581529600

- Pagefile Usage -
PagefileUsage: 390565888, PeakPagefileUsage: 426311680

- Working Set Size -
WorkingSetSize: 399306752, PeakWorkingSetSize: 434069504, PageFaultCount: 11664831

*** Dump of thread ID 2632 (state: Waiting): ***

- Information -
Status: Wait Reason: UserRequest, , Kernel Time: 664843776.000000, User Time: 110222032896.000000, Wait Time: 2563551.000000

- Unhandled Exception Record -
Reason: Access Violation (0xc0000005) at address 0x00E6ACE0 read attempt to address 0x1AB5F000

- Registers -
eax=1ab5efe8 ebx=02947444 ecx=71bf2194 edx=028926e0 esi=1a81d688 edi=0000000b
eip=00e6ace0 esp=01f8dd38 ebp=01f8dde4
cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00010206

- Callstack -
ChildEBP RetAddr Args to Child
01f8dde4 00e6be04 00000000 bff00000 00000000 bff00000 minirosetta_3.22_windows_intelx!cppdb::atomic_counter::get+0x0
01f8deac 00e6be9f 1a59d508 71bf2218 11b97750 01f8df9c minirosetta_3.22_windows_intelx!cppdb::atomic_counter::get+0x0
01f8dec0 010b240b 00000000 0053332a 01f8dfd4 1a59d508 minirosetta_3.22_windows_intelx!cppdb::atomic_counter::get+0x0
01f8dfa4 00505478 01f8dfd4 01f8dfec 1a59d508 71bf2318 minirosetta_3.22_windows_intelx!cppdb::backend::static_driver::in_use+0x0
01f8dfcc 005070a0 01f8dfec 01f8e010 71bf2344 00000001 minirosetta_3.22_windows_intelx!cppdb::atomic_counter::atomic_counter+0x0
01f8e2b4 00507acb 01f8e2d8 00000000 71bf1e6c 1a0c6fa8 minirosetta_3.22_windows_intelx!cppdb::atomic_counter::atomic_counter+0x0
01f8e2fc 005092e4 01f8e32c 1a0c6fa8 008842c9 01f8e32c minirosetta_3.22_windows_intelx!cppdb::atomic_counter::atomic_counter+0x0
01f8e324 00884aa9 71bf1f94 1b2d1ca8 02925000 1a0c6fa8 minirosetta_3.22_windows_intelx!cppdb::atomic_counter::atomic_counter+0x0
01f8e378 008856e1 01f8e3b4 0000000f 067ac100 008856b4 minirosetta_3.22_windows_intelx!cppdb::mutex::mutex+0x0
01f8e420 01034b77 00000004 0064d31f 01f8e464 00000001 minirosetta_3.22_windows_intelx!cppdb::mutex::mutex+0x0
01f8e61c 00638181 01f8eb50 01082890 71006f6e 01f8eb50 minirosetta_3.22_windows_intelx!cppdb::backend::static_driver::in_use+0x0
01f8e670 00bef3a0 01f8e628 71bf1a24 06a23a78 11bdff78 minirosetta_3.22_windows_intelx!cppdb::mutex::~mutex+0x0
01f8e9d4 00403120 0150f2a8 006001e9 01f8eb50 71bf1548 minirosetta_3.22_windows_intelx!cppdb::atomic_counter::get+0x0
01f8ea48 006003fb 01f8eb50 11bdff78 11bdff78 06a23af4 minirosetta_3.22_windows_intelx!+0x0
01f8eb30 005e88d7 01f8eb50 71bf10d0 028b7340 00000000 minirosetta_3.22_windows_intelx!cppdb::mutex::~mutex+0x0
01f8ec88 00414433 37353054 305f5330 33303030 028b7300 minirosetta_3.22_windows_intelx!cppdb::shared_object::sym+0x0
01f8ed0c 005fc556 00000000 71bf11b8 00000000 0000000d minirosetta_3.22_windows_intelx!cppdb::atomic_counter::atomic_counter+0x0
01f8ed40 004055aa 00000000 71bf117c 00000a28 00000002 minirosetta_3.22_windows_intelx!cppdb::mutex::~mutex+0x0
01f8ede0 7c920222 00000009 003f0838 003f0000 00000000 minirosetta_3.22_windows_intelx!+0x0
01f8ffb0 0041b100 7175142c 00000001 01f8fff0 7c817077 ntdll!_RtlpAllocateFromHeapLookaside@4+0x0
01f8ffe0 7c839ad7 7c817080 00000000 00000000 00000000 minirosetta_3.22_windows_intelx!cppdb::atomic_counter::atomic_counter+0x0
01f8ffe4 7c81707f 00000000 00000000 00000000 004183d0 kernel32!__SEH_epilog+0x0
01f8ffe8 00000000 00000000 00000000 004183d0 00000000 kernel32!_BaseProcessStart@4+0x0 FPO: [0,0,0]

*** Dump of thread ID 3052 (state: Waiting): ***

- Information -
Status: Wait Reason: ExecutionDelay, , Kernel Time: 156250.000000, User Time: 0.000000, Wait Time: 2563548.000000

- Registers -
eax=03f0fb44 ebx=00000000 ecx=7047fca4 edx=e4000000 esi=00000000 edi=03f0ff70
eip=7c91e514 esp=03f0ff40 ebp=03f0ff98
cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00000202

- Callstack -
ChildEBP RetAddr Args to Child
03f0ff3c 7c91d21a 7c8023f1 00000000 03f0ff70 00000000 ntdll!_KiFastSystemCallRet@0+0x0 FPO: [0,0,0]
03f0ff40 7c8023f1 00000000 03f0ff70 00000000 7c802446 ntdll!_NtDelayExecution@8+0x0 FPO: [2,0,0]
03f0ff98 7c802455 00000064 00000000 03f0ffec 0040856b kernel32!_SleepEx@8+0x0
03f0ffa8 0040856b 00000064 00000000 7c80b729 00000000 kernel32!_Sleep@4+0x0
03f0ffec 00000000 00408560 00000000 00000000 ae178090 minirosetta_3.22_windows_intelx!+0x0

*** Dump of thread ID 1244 (state: Waiting): ***

- Information -
Status: Wait Reason: ExecutionDelay, , Kernel Time: 0.000000, User Time: 0.000000, Wait Time: 2563454.000000

- Registers -
eax=0fe1fe28 ebx=05a36401 ecx=0fe1e734 edx=000016fd esi=00000000 edi=0fe1fdf8
eip=7c91e514 esp=0fe1fdc8 ebp=0fe1fe20
cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00000202

- Callstack -
ChildEBP RetAddr Args to Child
0fe1fdc4 7c91d21a 7c8023f1 00000000 0fe1fdf8 000000b9 ntdll!_KiFastSystemCallRet@0+0x0 FPO: [0,0,0]
0fe1fdc8 7c8023f1 00000000 0fe1fdf8 000000b9 00015180 ntdll!_NtDelayExecution@8+0x0 FPO: [2,0,0]
0fe1fe20 7c802455 000007d0 00000000 00003840 0060c372 kernel32!_SleepEx@8+0x0
0fe1fe30 0060c372 000007d0 7fa602e4 ffffffff 05a36448 kernel32!_Sleep@4+0x0
0fe1fe38 7fa602e4 ffffffff 05a36448 0fe1ff6c 05a36448 minirosetta_3.22_windows_intelx!cppdb::mutex::~mutex+0x0
0fe1fe3c ffffffff 05a36448 0fe1ff6c 05a36448 00000001 minirosetta_3.22_windows_intelx!+0x0 SymFromAddr(): GetLastError = '126' SymGetLineFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '7fa602e4'
0fe1ff3c 7c927c51 7c927d08 7c800000 0fe1ff7c 00000000 minirosetta_3.22_windows_intelx!+0x0 SymFromAddr(): GetLastError = '126' SymGetLineFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = 'ffffffff'
0fe1ffe0 7c80b72f 00000000 00000000 00000000 00414b02 ntdll!_LdrpGetProcedureAddress@20+0x0 SymFromAddr(): GetLastError = '126' SymGetLineFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '7c927c51'
0fe1ffe4 00000000 00000000 00000000 00414b02 05a36448 kernel32!_BaseThreadStart@8+0x0 FPO: [0,0,0] SymFromAddr(): GetLastError = '126' SymGetLineFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '7c80b72f'


*** Debug Message Dump ****


*** Foreground Window Data ***
Window Name :
Window Class :
Window Process ID: 0
Window Thread ID : 0

Exiting...

</stderr_txt>
]]>
============================================================


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Message 72321 - Posted: 16 Feb 2012, 11:29:52 UTC - in response to Message 72320.  

I'm running ATM another CASP9_ac_benchmark_hybridization* task, didn't checkpoint after two hours CPU-time as well.

OK, the other WU checkpointed after 02:25:47 CPU time. I know rosetta's checkpointing does not follow exactly the setting, but that's a lot more than the 1 Minute I have in my settings, quite a lot job would be lost, if I needed to reboot the machine (or on system crash, power outage or whatever) and it could be quite impossible to crunch that successfully for people who run that only as screensaver.
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Message 72329 - Posted: 16 Feb 2012, 15:38:41 UTC - in response to Message 72321.  

I'm running ATM another CASP9_ac_benchmark_hybridization* task, didn't checkpoint after two hours CPU-time as well.

OK, the other WU checkpointed after 02:25:47 CPU time. I know rosetta's checkpointing does not follow exactly the setting, but that's a lot more than the 1 Minute I have in my settings, quite a lot job would be lost, if I needed to reboot the machine (or on system crash, power outage or whatever) and it could be quite impossible to crunch that successfully for people who run that only as screensaver.


You won't want to run the XXL workunits from RNA World, then. I got one that went about 240 hours without checkpoints, and now have one likely to take about 350 hours without checkpoints.
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Message 72350 - Posted: 17 Feb 2012, 20:16:07 UTC

The points at which a BOINC application can checkpoint are determined by the application. Not the user settings. The user settings just instruct the BOINC Manager to cap the amount of disk I/O that a task attempts.

If you have it set to one minute, you are missing the point of it's intended purpose. Any work done after a checkpoint is automatically recovered when the tasks gets to begin again. Taking checkpoints involves a considerable amount of overhead. You want your machine to be spending it's time working on a protein, not enduring overhead.

The Project Team has voiced in the past the desire to be able to checkpoint about every 15 minutes. However, as new types of tasks are developed, it is not uncommon to see checkpoints only at the completion of a model. And the time to do each model varies significantly between different protocols. As new protocols mature, additional checkpoint capabilities are generally added to bring them inline with that 15 minute guideline.

So if a task attempts to write checkpoints every 15 minutes, and your settings indicate you only want to endure the overhead and disk IO every hour, that's where the BOINC preference would come in to play to help minimize the disk activity on the machine.
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Message 72371 - Posted: 20 Feb 2012, 8:15:16 UTC

CASP9_ad_benchmark_hybridization_run05_T0584_SAVE_ALL_OUT_IGNORE_THE_REST_39383_145 errored out for me as well.

Here the stderr out:
============================================================
<core_client_version>6.12.34</core_client_version>
<![CDATA[
<message>
- exit code -1073741819 (0xc0000005)
</message>
<stderr_txt>
[2012- 2-16 8:47:24:] :: BOINC:: Initializing ... ok.
[2012- 2-16 8:47:24:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev47343.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_CASP9_ad_benchmark_hybridization_run05_T0584_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
# cpu_run_time_pref: 86400
[2012- 2-19 11: 9:29:] :: BOINC:: Initializing ... ok.
[2012- 2-19 11: 9:29:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev47343.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_CASP9_ad_benchmark_hybridization_run05_T0584_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
# cpu_run_time_pref: 86400


Unhandled Exception Detected...

- Unhandled Exception Record -
Reason: Access Violation (0xc0000005) at address 0x00E6ACE0 read attempt to address 0x1D76E000

Engaging BOINC Windows Runtime Debugger...



********************


BOINC Windows Runtime Debugger Version 6.5.0


Dump Timestamp : 02/19/12 17:38:37
Install Directory : C:ProgrammeBOINC
Data Directory : C:Dokumente und EinstellungenAll UsersAnwendungsdatenBOINC
Project Symstore :
Loaded Library : C:ProgrammeBOINC\dbghelp.dll
Loaded Library : C:ProgrammeBOINC\symsrv.dll
Loaded Library : C:ProgrammeBOINC\srcsrv.dll
LoadLibraryA( C:ProgrammeBOINC\version.dll ): GetLastError = 126
Loaded Library : version.dll
Debugger Engine : 4.0.5.0
Symbol Search Path: C:Dokumente und EinstellungenAll UsersAnwendungsdatenBOINCslots3;C:Dokumente und EinstellungenAll UsersAnwendungsdatenBOINCprojectsboinc.bakerlab.org_rosetta;srv*C:Dokumente und EinstellungenAll UsersAnwendungsdatenBOINCprojectsboinc.bakerlab.org_rosettasymbols*http://msdl.microsoft.com/download/symbols;srv*C:Dokumente und EinstellungenAll UsersAnwendungsdatenBOINCprojectsboinc.bakerlab.org_rosettasymbols*http://boinc.berkeley.edu/symstore


ModLoad: 00400000 011fd000 C:Dokumente und EinstellungenAll UsersAnwendungsdatenBOINCprojectsboinc.bakerlab.org_rosettaminirosetta_3.22_windows_intelx86.exe (-exported- Symbols Loaded)
Linked PDB Filename : D:boinc_buildminirosetta_beta_3.22rosetta_sourceideVisualStudioBoincReleaseminirosetta_beta_3.22_windows_intelx86.pdb

ModLoad: 7c910000 000b9000 C:WINDOWSsystem32ntdll.dll (5.1.2600.6055) (PDB Symbols Loaded)
Linked PDB Filename : ntdll.pdb
File Version : 5.1.2600.6055 (xpsp_sp3_gdr.101209-1647)
Company Name : Microsoft Corporation
Product Name : Betriebssystem Microsoft&#174; Windows&#174;
Product Version : 5.1.2600.6055

ModLoad: 7c800000 00108000 C:WINDOWSsystem32kernel32.dll (5.1.2600.5781) (PDB Symbols Loaded)
Linked PDB Filename : kernel32.pdb
File Version : 5.1.2600.5781 (xpsp_sp3_gdr.090321-1317)
Company Name : Microsoft Corporation
Product Name : Betriebssystem Microsoft&#174; Windows&#174;
Product Version : 5.1.2600.5781

ModLoad: 64d00000 00034000 C:ProgrammeAVAST SoftwareAvastsnxhk.dll (6.0.1367.0) (-exported- Symbols Loaded)
Linked PDB Filename : e:srcBUILDSReleasex86snxhk.pdb
File Version : 6.0.1367.0
Company Name : AVAST Software
Product Name : avast! Antivirus
Product Version : 6.0.1367.0

ModLoad: 71a10000 00017000 C:WINDOWSsystem32WS2_32.dll (5.1.2600.5512) (PDB Symbols Loaded)
Linked PDB Filename : ws2_32.pdb
File Version : 5.1.2600.5512 (xpsp.080413-0852)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 5.1.2600.5512

ModLoad: 77da0000 000aa000 C:WINDOWSsystem32ADVAPI32.dll (5.1.2600.5755) (PDB Symbols Loaded)
Linked PDB Filename : advapi32.pdb
File Version : 5.1.2600.5755 (xpsp_sp3_gdr.090206-1234)
Company Name : Microsoft Corporation
Product Name : Betriebssystem Microsoft&#174; Windows&#174;
Product Version : 5.1.2600.5755

ModLoad: 77e50000 00093000 C:WINDOWSsystem32RPCRT4.dll (5.1.2600.6022) (PDB Symbols Loaded)
Linked PDB Filename : rpcrt4.pdb
File Version : 5.1.2600.6022 (xpsp_sp3_gdr.100813-1643)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 5.1.2600.6022

ModLoad: 77fc0000 00011000 C:WINDOWSsystem32Secur32.dll (5.1.2600.5834) (PDB Symbols Loaded)
Linked PDB Filename : secur32.pdb
File Version : 5.1.2600.5834 (xpsp_sp3_gdr.090624-1305)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 5.1.2600.5834

ModLoad: 77be0000 00058000 C:WINDOWSsystem32msvcrt.dll (7.0.2600.5512) (PDB Symbols Loaded)
Linked PDB Filename : msvcrt.pdb
File Version : 7.0.2600.5512 (xpsp.080413-2111)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 7.0.2600.5512

ModLoad: 71a00000 00008000 C:WINDOWSsystem32WS2HELP.dll (5.1.2600.5512) (PDB Symbols Loaded)
Linked PDB Filename : ws2help.pdb
File Version : 5.1.2600.5512 (xpsp.080413-0852)
Company Name : Microsoft Corporation
Product Name : Betriebssystem Microsoft&#174; Windows&#174;
Product Version : 5.1.2600.5512

ModLoad: 7e360000 00091000 C:WINDOWSsystem32USER32.dll (5.1.2600.5512) (PDB Symbols Loaded)
Linked PDB Filename : user32.pdb
File Version : 5.1.2600.5512 (xpsp.080413-2105)
Company Name : Microsoft Corporation
Product Name : Betriebssystem Microsoft&#174; Windows&#174;
Product Version : 5.1.2600.5512

ModLoad: 77ef0000 00049000 C:WINDOWSsystem32GDI32.dll (5.1.2600.5698) (PDB Symbols Loaded)
Linked PDB Filename : gdi32.pdb
File Version : 5.1.2600.5698 (xpsp_sp3_gdr.081022-1932)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 5.1.2600.5698

ModLoad: 76330000 0001d000 C:WINDOWSsystem32IMM32.DLL (5.1.2600.5512) (PDB Symbols Loaded)
Linked PDB Filename : imm32.pdb
File Version : 5.1.2600.5512 (xpsp.080413-2105)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 5.1.2600.5512

ModLoad: 77660000 00021000 C:WINDOWSsystem32NTMARTA.DLL (5.1.2600.5512) (PDB Symbols Loaded)
Linked PDB Filename : ntmarta.pdb
File Version : 5.1.2600.5512 (xpsp.080413-2113)
Company Name : Microsoft Corporation
Product Name : Betriebssystem Microsoft&#174; Windows&#174;
Product Version : 5.1.2600.5512

ModLoad: 774b0000 0013e000 C:WINDOWSsystem32ole32.dll (5.1.2600.6168) (PDB Symbols Loaded)
Linked PDB Filename : ole32.pdb
File Version : 5.1.2600.6168 (xpsp_sp3_gdr.111101-1829)
Company Name : Microsoft Corporation
Product Name : Betriebssystem Microsoft&#174; Windows&#174;
Product Version : 5.1.2600.6168

ModLoad: 71b70000 00013000 C:WINDOWSsystem32SAMLIB.dll (5.1.2600.5512) (PDB Symbols Loaded)
Linked PDB Filename : samlib.pdb
File Version : 5.1.2600.5512 (xpsp.080413-2113)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 5.1.2600.5512

ModLoad: 76f20000 0002d000 C:WINDOWSsystem32WLDAP32.dll (5.1.2600.5512) (PDB Symbols Loaded)
Linked PDB Filename : wldap32.pdb
File Version : 5.1.2600.5512 (xpsp.080413-2113)
Company Name : Microsoft Corporation
Product Name : Betriebssystem Microsoft&#174; Windows&#174;
Product Version : 5.1.2600.5512

ModLoad: 25560000 00115000 C:ProgrammeBOINCdbghelp.dll (6.8.4.0) (PDB Symbols Loaded)
Linked PDB Filename : dbghelp.pdb
File Version : 6.8.0004.0 (debuggers(dbg).070515-1751)
Company Name : Microsoft Corporation
Product Name : Debugging Tools for Windows(R)
Product Version : 6.8.0004.0

ModLoad: 18c90000 00048000 C:ProgrammeBOINCsymsrv.dll (6.8.4.0) (PDB Symbols Loaded)
Linked PDB Filename : symsrv.pdb
File Version : 6.8.0004.0 (debuggers(dbg).070515-1751)
Company Name : Microsoft Corporation
Product Name : Debugging Tools for Windows(R)
Product Version : 6.8.0004.0

ModLoad: 18ce0000 0003b000 C:ProgrammeBOINCsrcsrv.dll (6.8.4.0) (PDB Symbols Loaded)
Linked PDB Filename : srcsrv.pdb
File Version : 6.8.0004.0 (debuggers(dbg).070515-1751)
Company Name : Microsoft Corporation
Product Name : Debugging Tools for Windows(R)
Product Version : 6.8.0004.0

ModLoad: 77bd0000 00008000 C:WINDOWSsystem32version.dll (5.1.2600.5512) (PDB Symbols Loaded)
Linked PDB Filename : version.pdb
File Version : 5.1.2600.5512 (xpsp.080413-2105)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 5.1.2600.5512



*** Dump of the Process Statistics: ***

- I/O Operations Counters -
Read: 15854, Write: 0, Other 5682

- I/O Transfers Counters -
Read: 0, Write: 178660, Other 0

- Paged Pool Usage -
QuotaPagedPoolUsage: 107076, QuotaPeakPagedPoolUsage: 107076
QuotaNonPagedPoolUsage: 3976, QuotaPeakNonPagedPoolUsage: 4040

- Virtual Memory Usage -
VirtualSize: 641806336, PeakVirtualSize: 645795840

- Pagefile Usage -
PagefileUsage: 374571008, PeakPagefileUsage: 404062208

- Working Set Size -
WorkingSetSize: 382971904, PeakWorkingSetSize: 412295168, PageFaultCount: 28103123

*** Dump of thread ID 2220 (state: Waiting): ***

- Information -
Status: Wait Reason: UserRequest, , Kernel Time: 1336562560.000000, User Time: 219781398528.000000, Wait Time: 1915376.000000

- Unhandled Exception Record -
Reason: Access Violation (0xc0000005) at address 0x00E6ACE0 read attempt to address 0x1D76E000

- Registers -
eax=1d76dfe8 ebx=02947494 ecx=ec9d2137 edx=028d4000 esi=1b2191e8 edi=0000000b
eip=00e6ace0 esp=01f8dd38 ebp=01f8dde4
cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00010206

- Callstack -
ChildEBP RetAddr Args to Child
01f8dde4 00e6be04 00000000 bff00000 00000000 bff00000 minirosetta_3.22_windows_intelx!cppdb::atomic_counter::get+0x0
01f8deac 00e6be9f 1b0dbd50 ec9d22bb 199335e8 01f8df9c minirosetta_3.22_windows_intelx!cppdb::atomic_counter::get+0x0
01f8dec0 010b240b 00000000 0053332a 01f8dfd4 1b0dbd50 minirosetta_3.22_windows_intelx!cppdb::atomic_counter::get+0x0
01f8dfa4 00505478 01f8dfd4 01f8dfec 1b0dbd50 ec9d23bb minirosetta_3.22_windows_intelx!cppdb::backend::static_driver::in_use+0x0
01f8dfcc 005070a0 01f8dfec 01f8e010 ec9d23e7 00000001 minirosetta_3.22_windows_intelx!cppdb::atomic_counter::atomic_counter+0x0
01f8e2b4 00507acb 01f8e2d8 00000000 ec9d1ecf 19ed48f0 minirosetta_3.22_windows_intelx!cppdb::atomic_counter::atomic_counter+0x0
01f8e2fc 005092e4 01f8e32c 19ed48f0 008842c9 01f8e32c minirosetta_3.22_windows_intelx!cppdb::atomic_counter::atomic_counter+0x0
01f8e324 00884aa9 ec9d1f37 1aee1318 02925000 19ed48f0 minirosetta_3.22_windows_intelx!cppdb::atomic_counter::atomic_counter+0x0
01f8e378 008856e1 01f8e3b4 0000000f 19b96e30 008856b4 minirosetta_3.22_windows_intelx!cppdb::mutex::mutex+0x0
01f8e420 01034b77 00000004 0064d31f 01f8e464 00000001 minirosetta_3.22_windows_intelx!cppdb::mutex::mutex+0x0
01f8e61c 00638181 01f8eb50 01082890 ec006f6e 01f8eb50 minirosetta_3.22_windows_intelx!cppdb::backend::static_driver::in_use+0x0
01f8e670 00bef3a0 01f8e628 ec9d1a87 0635a280 186c51d8 minirosetta_3.22_windows_intelx!cppdb::mutex::~mutex+0x0
01f8e9d4 00403120 0150f2a8 006001e9 01f8eb50 ec9d15eb minirosetta_3.22_windows_intelx!cppdb::atomic_counter::get+0x0
01f8ea48 006003fb 01f8eb50 186c51d8 186c51d8 0635a2fc minirosetta_3.22_windows_intelx!+0x0
01f8eb30 005e88d7 01f8eb50 ec9d1073 028b7340 00000000 minirosetta_3.22_windows_intelx!cppdb::mutex::~mutex+0x0
01f8ec88 00414433 38353054 305f5334 37313030 028b7300 minirosetta_3.22_windows_intelx!cppdb::shared_object::sym+0x0
01f8ed0c 005fc556 00000000 ec9d111b 00000000 0000000d minirosetta_3.22_windows_intelx!cppdb::atomic_counter::atomic_counter+0x0
01f8ed40 004055aa 00000000 ec9d11df 00000a28 00000002 minirosetta_3.22_windows_intelx!cppdb::mutex::~mutex+0x0
01f8ede0 7c920222 00000009 003f0838 003f0000 00000000 minirosetta_3.22_windows_intelx!+0x0
01f8ffb0 0041b100 ec57148f 00000001 01f8fff0 7c817077 ntdll!_RtlpAllocateFromHeapLookaside@4+0x0
01f8ffe0 7c839ad7 7c817080 00000000 00000000 00000000 minirosetta_3.22_windows_intelx!cppdb::atomic_counter::atomic_counter+0x0
01f8ffe4 7c81707f 00000000 00000000 00000000 004183d0 kernel32!__SEH_epilog+0x0
01f8ffe8 00000000 00000000 00000000 004183d0 00000000 kernel32!_BaseProcessStart@4+0x0 FPO: [0,0,0]

*** Dump of thread ID 1308 (state: Waiting): ***

- Information -
Status: Wait Reason: ExecutionDelay, , Kernel Time: 0.000000, User Time: 0.000000, Wait Time: 1915373.000000

- Registers -
eax=03f0f8b0 ebx=00000000 ecx=00000005 edx=00000078 esi=00000000 edi=03f0ff70
eip=7c91e514 esp=03f0ff40 ebp=03f0ff98
cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00000202

- Callstack -
ChildEBP RetAddr Args to Child
03f0ff3c 7c91d21a 7c8023f1 00000000 03f0ff70 00000000 ntdll!_KiFastSystemCallRet@0+0x0 FPO: [0,0,0]
03f0ff40 7c8023f1 00000000 03f0ff70 00000000 7c802446 ntdll!_NtDelayExecution@8+0x0 FPO: [2,0,0]
03f0ff98 7c802455 00000064 00000000 03f0ffec 0040856b kernel32!_SleepEx@8+0x0
03f0ffa8 0040856b 00000064 00000000 7c80b729 00000000 kernel32!_Sleep@4+0x0
03f0ffec 00000000 00408560 00000000 00000000 63060000 minirosetta_3.22_windows_intelx!+0x0

*** Dump of thread ID 1540 (state: Waiting): ***

- Information -
Status: Wait Reason: ExecutionDelay, , Kernel Time: 0.000000, User Time: 0.000000, Wait Time: 1915329.000000

- Registers -
eax=073dfe28 ebx=05f52b01 ecx=073de734 edx=00002d91 esi=00000000 edi=073dfdf8
eip=7c91e514 esp=073dfdc8 ebp=073dfe20
cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00000202

- Callstack -
ChildEBP RetAddr Args to Child
073dfdc4 7c91d21a 7c8023f1 00000000 073dfdf8 00000109 ntdll!_KiFastSystemCallRet@0+0x0 FPO: [0,0,0]
073dfdc8 7c8023f1 00000000 073dfdf8 00000109 00015180 ntdll!_NtDelayExecution@8+0x0 FPO: [2,0,0]
073dfe20 7c802455 000007d0 00000000 00003840 0060c372 kernel32!_SleepEx@8+0x0
073dfe30 0060c372 000007d0 ea580247 fffffffe 05f52bb8 kernel32!_Sleep@4+0x0
073dfe38 ea580247 fffffffe 05f52bb8 073dff6c 05f52bb8 minirosetta_3.22_windows_intelx!cppdb::mutex::~mutex+0x0
073dfe3c fffffffe 05f52bb8 073dff6c 05f52bb8 00000001 minirosetta_3.22_windows_intelx!+0x0 SymFromAddr(): GetLastError = '126' SymGetLineFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = 'ea580247'
073dff3c 7c927c51 7c927d08 7c800000 073dff7c 00000000 minirosetta_3.22_windows_intelx!+0x0 SymFromAddr(): GetLastError = '126' SymGetLineFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = 'fffffffe'
073dffe0 7c80b72f 00000000 00000000 00000000 00414b02 ntdll!_LdrpGetProcedureAddress@20+0x0 SymFromAddr(): GetLastError = '126' SymGetLineFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '7c927c51'
073dffe4 00000000 00000000 00000000 00414b02 05f52bb8 kernel32!_BaseThreadStart@8+0x0 FPO: [0,0,0] SymFromAddr(): GetLastError = '126' SymGetLineFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '7c80b72f'


*** Debug Message Dump ****


*** Foreground Window Data ***
Window Name :
Window Class :
Window Process ID: 0
Window Thread ID : 0

Exiting...

</stderr_txt>
]]>
============================================================

.
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Mad_Max

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Posts: 207
Credit: 23,096,850
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Message 72393 - Posted: 25 Feb 2012, 2:46:09 UTC

Lot of Compute error (Access Violation in debug info) on CASP9_ap_benchmark_hybridization... tasks type.
Examples:
https://boinc.bakerlab.org/rosetta/result.php?resultid=485972903
https://boinc.bakerlab.org/rosetta/result.php?resultid=485972902
https://boinc.bakerlab.org/rosetta/result.php?resultid=485964325
https://boinc.bakerlab.org/rosetta/result.php?resultid=485269524
https://boinc.bakerlab.org/rosetta/result.php?resultid=485225643
https://boinc.bakerlab.org/rosetta/result.php?resultid=484902175
https://boinc.bakerlab.org/rosetta/result.php?resultid=484892871

Few my team member reports many errors on this type of WUs too.

P.S.
It is not about BOINC 7.0.8.
I changed the version of BOINC only recently. Before i use 6.12.32 version and have many errors in this type of WUs. And on my 2nd computer i use BOINC 6.10.18 and there observed the same errors.
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P . P . L .

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Message 72409 - Posted: 29 Feb 2012, 5:56:26 UTC
Last modified: 29 Feb 2012, 5:57:13 UTC

Hi.

You might have some bad tasks, had these two on different rigs got the same error.


dun1_csrosetta_noe_SAVE_ALL_OUT__41717_2931_0

dun1_csrosetta_noe_SAVE_ALL_OUT__41717_1304_0

ERROR: dis==0 in pairtermderiv!
ERROR:: Exit from: src/core/scoring/methods/PairEnergy.cc line: 467
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish
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Snags

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Message 72433 - Posted: 3 Mar 2012, 22:11:05 UTC

CASP9_be_perfect_aln_hybrid_T0636_SAVE_ALL_OUT_IGNORE_THE_REST_42872_26

both copies produced the same error:


ERROR: Fatal Error in VDW_Energy
ERROR:: Exit from: ......srccorescoringmethodsVDW_Energy.cc line: 169
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish
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Profile rochester new york
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Message 72434 - Posted: 4 Mar 2012, 1:47:33 UTC
Last modified: 4 Mar 2012, 1:49:58 UTC

can someone post update procedures. it might help people here
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Mod.Sense
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Message 72444 - Posted: 4 Mar 2012, 17:03:07 UTC

"Update procedures"?? ...for the Rosetta version? BOINC Manager takes care of that for you. When a BOINC project changes their active version, the manager assures the executable for the appropriate application version is available to run on your BOINC host.
Rosetta Moderator: Mod.Sense
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Message 72446 - Posted: 4 Mar 2012, 18:55:43 UTC - in response to Message 72444.  

"Update procedures"?? ...for the Rosetta version? BOINC Manager takes care of that for you. When a BOINC project changes their active version, the manager assures the executable for the appropriate application version is available to run on your BOINC host.



thanks ....could a small announcement accompany the update announcement that nothing needs to be done when you post a new update........ they are appreciated but some people might not know that its automatic and spend time looking how to update manually
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Jesse Viviano

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Message 72447 - Posted: 4 Mar 2012, 21:44:22 UTC
Last modified: 4 Mar 2012, 21:45:17 UTC

I have another bad work unit: CASP9_be_perfect_aln_hybrid_T0563_SAVE_ALL_OUT_IGNORE_THE_REST_42825_11. It failed for me and the previous person who tried to crunch this work unit.
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Message 72461 - Posted: 6 Mar 2012, 15:58:34 UTC

CASP9_az_benchmark_hybridization_run27_T0596_SAVE_ALL_OUT_IGNORE_THE_REST_41960_355_0

Maximum disk usage exceeded

# cpu_run_time_pref: 28800
Hbond tripped: [2012- 3- 6 10:10:55:]

CPU time 7692.388


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Message 72471 - Posted: 9 Mar 2012, 7:16:29 UTC

My last three 3.22 workunits each quickly gave a computation error, on both of my desktops.

https://boinc.bakerlab.org/rosetta/result.php?resultid=489997894

Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
======================================================
DONE :: 0 starting structures 1201 cpu seconds
This process generated 0 decoys from 0 attempts
======================================================
BOINC :: WS_max 0

BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish

</stderr_txt>
<message>
upload failure: <file_xfer_error>
<file_name>T0597_ga_rs_stg0_lrlx_t000__casp9_SAVE_ALL_OUT_44122_335_0_0</file_name>
<error_code>-161</error_code>
</file_xfer_error>

</message>
]]>

application version 3.22


https://boinc.bakerlab.org/rosetta/result.php?resultid=489997887

https://boinc.bakerlab.org/rosetta/result.php?resultid=489988179


Any known reason for this? Both computers were returning valid results before these.
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