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Minirosetta v1.39 bug thread

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Chu

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Message 56498 - Posted 28 Oct 2008 22:27:19 UTC

Please report issues and bugs with Minirosetta v1.39 in this thread. In this update, we added two important applications, protein docking and protein folding with explicit metal ions. From the graphics, you probably can tell them by a structure with two different chain colors and a protein folding around a colored sphere, respectively. See the Rosett@home science section for more descriptions on these projects.
____________

Naesbye

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Message 56506 - Posted 29 Oct 2008 8:05:25 UTC - in response to Message ID 56498.

Well, I did wonder why the date of the newspost was June 10th.....but apart from that, it seems to work fine.

Chilean Profile
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Message 56508 - Posted 29 Oct 2008 16:18:11 UTC - in response to Message ID 56506.

Well, I did wonder why the date of the newspost was June 10th.....but apart from that, it seems to work fine.


Nice catch.


I haven't gotten the app yet (Actually, I did but I have a bazillion WU left before it reaches the 1.39s)
____________

googloo
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Message 56512 - Posted 29 Oct 2008 19:15:12 UTC
Last modified: 29 Oct 2008 19:15:52 UTC

Please, please, please notify us of new versions in
Rosetta Application Version Release Log.
____________

Rabinovitch Profile
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Message 56521 - Posted 29 Oct 2008 23:01:26 UTC

30.10.2008 1:46:22|rosetta@home|Computation for task abinitio_nohomfrag_70_A_1t2iA_4466_68269_0 finished
30.10.2008 1:46:22|rosetta@home|Output file abinitio_nohomfrag_70_A_1t2iA_4466_68269_0_0 for task abinitio_nohomfrag_70_A_1t2iA_4466_68269_0 absent

Last days I saw such a bug also in ralph's minirosetta 1.39

Terrasapiens

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Message 56523 - Posted 30 Oct 2008 1:57:47 UTC

As with the last couple of mini rosetta versions I've got several pages of results with nothing but WU failures, but on the rare occasion where the BOINC client sees fit to send rosetta 5.98 WUs those process just fine.

See results: http://boinc.bakerlab.org/rosetta/results.php?userid=254884

Speedy
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Message 56524 - Posted 30 Oct 2008 5:10:58 UTC
Last modified: 30 Oct 2008 5:12:26 UTC

Whats up with this? All of these tasks failed in the 1st 5 seconds have I done something wrong?
____________
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P . P . L .
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Message 56525 - Posted 30 Oct 2008 6:03:20 UTC

Hi Speedy.

application version 1.02

I don't think i've seen this app version here before!

lucky you. ;) or not.

pete.



____________


Speedy
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Message 56526 - Posted 30 Oct 2008 6:11:53 UTC - in response to Message ID 56525.

Hi Speedy.

application version 1.02

I don't think i've seen this app version here before!

lucky you. ;) or not.

pete.



Hi Pete

you are right about lucky me or not. Hope you are well
____________
Have a crunching good day!!

Fishead

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Message 56529 - Posted 30 Oct 2008 10:58:29 UTC

http://boinc.bakerlab.org/rosetta/workunit.php?wuid=185612716
This workunit just stopped immediately after it started it's computation.

http://boinc.bakerlab.org/rosetta/workunit.php?wuid=185409243
This work unit had a similar problem, only it ran for 40 seconds.

AMD_is_logical

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Message 56530 - Posted 30 Oct 2008 11:56:42 UTC

Had a problem with this WU on one of my Linux systems:

relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0

It kept restarting about once a minute. It had been doing this for about 8 hours so I aborted it. Boinc manager showed the CPU time being reset to zero with each restart.

The stdout.txt file had grown to around 14MB. It had a lot of messages about inflating files, which repeateed with each restart.

The Boinc messages tab showed a very large number of messages like:

...
Thu 30 Oct 2008 06:15:31 AM EDT|rosetta@home|Restarting result relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0 using minirosetta version 139
Thu 30 Oct 2008 06:16:22 AM EDT|rosetta@home|Result relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0 exited with zero status but no 'finished' file
Thu 30 Oct 2008 06:16:22 AM EDT|rosetta@home|If this happens repeatedly you may need to reset the project.
Thu 30 Oct 2008 06:16:22 AM EDT||request_reschedule_cpus: process exited
Thu 30 Oct 2008 06:16:22 AM EDT|rosetta@home|Restarting result relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0 using minirosetta version 139
Thu 30 Oct 2008 06:17:12 AM EDT|rosetta@home|Result relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0 exited with zero status but no 'finished' file
Thu 30 Oct 2008 06:17:12 AM EDT|rosetta@home|If this happens repeatedly you may need to reset the project.
Thu 30 Oct 2008 06:17:12 AM EDT||request_reschedule_cpus: process exited
Thu 30 Oct 2008 06:17:12 AM EDT|rosetta@home|Restarting result relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0 using minirosetta version 139
Thu 30 Oct 2008 06:18:02 AM EDT|rosetta@home|Result relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0 exited with zero status but no 'finished' file
Thu 30 Oct 2008 06:18:02 AM EDT|rosetta@home|If this happens repeatedly you may need to reset the project.
Thu 30 Oct 2008 06:18:02 AM EDT||request_reschedule_cpus: process exited
...

Cathy

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Message 56533 - Posted 30 Oct 2008 20:08:20 UTC
Last modified: 30 Oct 2008 20:15:14 UTC

Minirosetta seems to finish it's work, but when I come home I have, literally, 181 processes running and 153 are minirosetta-related, most of them graphics. Plus, my computer is locked up and I have to either end ALL of the rosetta processes, plus a few others, or just reboot. This has never happened before. Do I need to disable my screensaver or download directx 10 compatibility? I am running XP, 2 gigahertz, 1 gb ram, plenty o' disk space, boinc client v 5.8.15. Should I update my boinc client? Your v 1.32 said it supported a lower version of boinc.

JEklund

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Message 56536 - Posted 30 Oct 2008 20:46:32 UTC - in response to Message ID 56530.

Had a problem with this WU on one of my Linux systems:

relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0

It kept restarting about once a minute. It had been doing this for about 8 hours so I aborted it. Boinc manager showed the CPU time being reset to zero with each restart.

The stdout.txt file had grown to around 14MB. It had a lot of messages about inflating files, which repeateed with each restart.

The Boinc messages tab showed a very large number of messages like:

...
Thu 30 Oct 2008 06:15:31 AM EDT|rosetta@home|Restarting result relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0 using minirosetta version 139
Thu 30 Oct 2008 06:16:22 AM EDT|rosetta@home|Result relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0 exited with zero status but no 'finished' file
Thu 30 Oct 2008 06:16:22 AM EDT|rosetta@home|If this happens repeatedly you may need to reset the project.
Thu 30 Oct 2008 06:16:22 AM EDT||request_reschedule_cpus: process exited
Thu 30 Oct 2008 06:16:22 AM EDT|rosetta@home|Restarting result relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0 using minirosetta version 139
Thu 30 Oct 2008 06:17:12 AM EDT|rosetta@home|Result relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0 exited with zero status but no 'finished' file
Thu 30 Oct 2008 06:17:12 AM EDT|rosetta@home|If this happens repeatedly you may need to reset the project.
Thu 30 Oct 2008 06:17:12 AM EDT||request_reschedule_cpus: process exited
Thu 30 Oct 2008 06:17:12 AM EDT|rosetta@home|Restarting result relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0 using minirosetta version 139
Thu 30 Oct 2008 06:18:02 AM EDT|rosetta@home|Result relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0 exited with zero status but no 'finished' file
Thu 30 Oct 2008 06:18:02 AM EDT|rosetta@home|If this happens repeatedly you may need to reset the project.
Thu 30 Oct 2008 06:18:02 AM EDT||request_reschedule_cpus: process exited
...


Howdy,
I had the same kind of (?) problem with Windows XP, there were sam ekind of messages like:

10/30/2008 10:12:49 PM|rosetta@home|If this happens repeatedly you may need to reboot your computer.
10/30/2008 10:12:49 PM|rosetta@home|Restarting task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 using minirosetta version 139
10/30/2008 10:14:07 PM|rosetta@home|Task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 exited with a DLL initialization error.
10/30/2008 10:14:07 PM|rosetta@home|If this happens repeatedly you may need to reboot your computer.
10/30/2008 10:14:07 PM|rosetta@home|Restarting task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 using minirosetta version 139
10/30/2008 10:15:18 PM|rosetta@home|Task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 exited with a DLL initialization error.
10/30/2008 10:15:18 PM|rosetta@home|If this happens repeatedly you may need to reboot your computer.
10/30/2008 10:15:18 PM|rosetta@home|Restarting task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 using minirosetta version 139
10/30/2008 10:16:23 PM|rosetta@home|Task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 exited with a DLL initialization error.
10/30/2008 10:16:23 PM|rosetta@home|If this happens repeatedly you may need to reboot your computer.
10/30/2008 10:16:23 PM|rosetta@home|Restarting task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 using minirosetta version 139
10/30/2008 10:17:28 PM|rosetta@home|Task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 exited with a DLL initialization error.
10/30/2008 10:17:28 PM|rosetta@home|If this happens repeatedly you may need to reboot your computer.
10/30/2008 10:17:29 PM|rosetta@home|Restarting task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 using minirosetta version 139
10/30/2008 10:18:34 PM|rosetta@home|Task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 exited with a DLL initialization error.
10/30/2008 10:18:34 PM|rosetta@home|If this happens repeatedly you may need to reboot your computer.
10/30/2008 10:18:34 PM|rosetta@home|Restarting task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 using minirosetta version 139
10/30/2008 10:19:37 PM|rosetta@home|Task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 exited with a DLL initialization error.
10/30/2008 10:19:37 PM|rosetta@home|If this happens repeatedly you may need to reboot your computer.
10/30/2008 10:19:38 PM|rosetta@home|Restarting task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 using minirosetta version 139
10/30/2008 10:20:39 PM|rosetta@home|Task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 exited with a DLL initialization error.
10/30/2008 10:20:39 PM|rosetta@home|If this happens repeatedly you may need to reboot your computer.
10/30/2008 10:20:39 PM|rosetta@home|Restarting task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 using minirosetta version 139
10/30/2008 10:21:39 PM|rosetta@home|Task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 exited with a DLL initialization error.
10/30/2008 10:21:39 PM|rosetta@home|If this happens repeatedly you may need to reboot your computer.
10/30/2008 10:21:39 PM|rosetta@home|Restarting task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 using minirosetta version 139
10/30/2008 10:22:40 PM|rosetta@home|Task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 exited with a DLL initialization error.
10/30/2008 10:22:40 PM|rosetta@home|If this happens repeatedly you may need to reboot your computer.
10/30/2008 10:22:41 PM|rosetta@home|Restarting task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 using minirosetta version 139
10/30/2008 10:23:41 PM|rosetta@home|Task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 exited with a DLL initialization error.
10/30/2008 10:23:41 PM|rosetta@home|If this happens repeatedly you may need to reboot your computer.

.. So I aborted this WU ..

-- Lundi --
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Rabinovitch Profile
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Message 56537 - Posted 31 Oct 2008 0:19:38 UTC

Hmm. It was buggy even while being a ralph. And now I still have a problems with 1.39:

10/31/08 01:06:24|rosetta@home|Restarting task abinitio_nohomfrag_70_A_2h28A_4466_96316_1 using minirosetta version 139
10/31/08 01:08:25|ralph@home|Sending scheduler request: To fetch work. Requesting 27367 seconds of work, reporting 0 completed tasks
10/31/08 01:08:36|ralph@home|Scheduler request completed: got 0 new tasks
10/31/08 01:08:38|rosetta@home|Restarting task abinitio_nohomfrag_70_A_2h28A_4466_96316_1 using minirosetta version 139
10/31/08 01:10:52|rosetta@home|Restarting task abinitio_nohomfrag_70_A_2h28A_4466_96316_1 using minirosetta version 139
10/31/08 01:13:13|rosetta@home|Restarting task abinitio_nohomfrag_70_A_2h28A_4466_96316_1 using minirosetta version 139
10/31/08 01:15:32|rosetta@home|Restarting task abinitio_nohomfrag_70_A_2h28A_4466_96316_1 using minirosetta version 139
10/31/08 01:17:51|rosetta@home|Restarting task abinitio_nohomfrag_70_A_2h28A_4466_96316_1 using minirosetta version 139
10/31/08 01:19:03|lhcathome|Sending scheduler request: To fetch work. Requesting 81986 seconds of work, reporting 0 completed tasks
10/31/08 01:19:08|lhcathome|Scheduler request completed: got 0 new tasks
10/31/08 01:20:06|rosetta@home|Restarting task abinitio_nohomfrag_70_A_2h28A_4466_96316_1 using minirosetta version 139
10/31/08 01:20:26|rosetta@home|Computation for task abinitio_nohomfrag_70_A_2h28A_4466_96316_1 finished
10/31/08 01:20:26|rosetta@home|Output file abinitio_nohomfrag_70_A_2h28A_4466_96316_1_0 for task abinitio_nohomfrag_70_A_2h28A_4466_96316_1 absent

WinXP x64, BOINC 6.3.19

Mike Tyka

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Message 56551 - Posted 31 Oct 2008 17:18:36 UTC - in response to Message ID 56536.

Thanks for posting, we've fixed that bug now! will be updating ralph and boinc in a few days.

[quote][quote]Had a problem with this WU on one of my Linux systems:

relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0

It kept restarting about once a minute. It had been doing this for about 8 hours so I aborted it. Boinc manager showed the CPU time being reset to zero with each restart.

The stdout.txt file had grown to around 14MB. It had a lot of messages about inflating files, which repeateed with each restart.

The Boinc messages tab showed a very large number of messages like:

...
Thu 30 Oct 2008 06:15:31 AM EDT|rosetta@home|Restarting result relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0 using minirosetta version 139
Thu 30 Oct 2008 06:16:22 AM EDT|rosetta@home|Result relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0 exited with zero status but no 'finished' file
Thu 30 Oct 2008 06:16:22 AM EDT|rosetta@home|If this happens repeatedly you may need to reset the project.
Thu 30 Oct 2008 06:16:22 AM EDT||request_reschedule_cpus: process exited

____________
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http://www.miketyka.com/

Aegis Maelstrom

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Message 56555 - Posted 31 Oct 2008 18:22:59 UTC
Last modified: 31 Oct 2008 19:12:19 UTC

Hi,

I'm pretty new here, yet my 1st report. :]

Task ID 203599248, WU ID 185962994, Win XP Pentium M machine.
I've got a computational error with following description:
"(...)ERROR: in::file::zip minirosetta_database.zip does not exist!(...)"

I have taken a look for such a file and it is non-existant. However, in C:\Documents and Settings\All Users\Application Data\BOINC\projects\boinc.bakerlab.org_rosetta
I found a minirosetta_database_rev25321 file with a minirosetta_database folder inside.

It looks like a mismatch between expected and actual name of the file.
So far I've copied the (...)_rev25321 file and renamed a copy to minirosetta_database. Hope it will work next time. If it runs, I will halt it and wait for your feedback to avoid any messing with the data.

EDIT: Copy trick did not work. The second WU got a "computational error" (Task ID 203661162) with the same description. Both were of a CASP8 type - I didn't have any such before.

EDIT2: Seems to be the same as a report in a massage 56524 above and other similar.

P.S. I've noticed that graphical Rosetta application occasionally shuts down. You need to restart it and goes all right.
P.S.S. Second thing is that BOINC install wizard makes a couple of strange things, like creating a boinc_master folder in Documents and Settings. The folder does not hold any BOINC data (as I may see) however duplicates some previously existing data from personal folders. I know this is not your application, however it might potentially mess with file locations.

I hope I will help somehow. :)
Best regards.

robertmiles Profile

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Message 56568 - Posted 31 Oct 2008 20:58:14 UTC - in response to Message ID 56533.

Minirosetta seems to finish it's work, but when I come home I have, literally, 181 processes running and 153 are minirosetta-related, most of them graphics. Plus, my computer is locked up and I have to either end ALL of the rosetta processes, plus a few others, or just reboot. This has never happened before. Do I need to disable my screensaver or download directx 10 compatibility? I am running XP, 2 gigahertz, 1 gb ram, plenty o' disk space, boinc client v 5.8.15. Should I update my boinc client? Your v 1.32 said it supported a lower version of boinc.


I don't know, but so far I've always used BOINC 5.10.45, as the WCG site requests for people also working on their projects.

Cathy

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Message 56571 - Posted 31 Oct 2008 21:23:12 UTC
Last modified: 31 Oct 2008 21:25:52 UTC

Well, I took the plunge and updated my Boinc manager to v 6.2.19. I was afraid that projects wouldn't attach properly and/or other glitches but everything went extremely smoothly and mini-rosetta seems to work fine now. I did uninstall the old Boinc manager first and close out all unecessary programs.

David Ball

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Message 56577 - Posted 31 Oct 2008 23:42:52 UTC

I've got multiple machines erroring out WUs immediately with the following stdout:


<core_client_version>6.2.19</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>

ERROR: in::file::zip minirosetta_database.zip does not exist!
ERROR:: Exit from: ..\..\src\apps\public\boinc\minirosetta.cc line: 74
called boinc_finish

</stderr_txt>
]]>


They're not able to get any more work. These are reliable, non-overclocked, HP Quads (Q6600) with 3 GB of memory each, running Vista Home Premium SP1 32 bit with all patches current.

____________
Have you read a good Science Fiction book lately?

Odd Braathun

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Message 56588 - Posted 1 Nov 2008 6:41:51 UTC - in response to Message ID 56577.
Last modified: 1 Nov 2008 7:35:36 UTC

<core_client_version>6.2.19</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>

ERROR: in::file::zip minirosetta_database.zip does not exist!
ERROR:: Exit from: ..\..\src\apps\public\boinc\minirosetta.cc line: 74
called boinc_finish

</stderr_txt>
]]>


This seems to be a problem with the client Rosetta Mini with new score terms.
I had 17 tasks of this type during Oct 31 and they all errored out after just
a few secs. Problems are reported under Rosetta Mini with new score terms and
Rosetta Mine with new score terms 1.02. Probably why they are not sending out
new WUs. Strangely enough there is no info from the project.

Just got a new task using the same client. But, time to completion 7:44:52.
Darn, it errored out immediately.

arminius Profile

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Message 56592 - Posted 1 Nov 2008 9:35:05 UTC

same error here:

<core_client_version>6.2.19</core_client_version>
<![CDATA[
<message>
Unzul�ssige Funktion. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>

ERROR: in::file::zip minirosetta_database.zip does not exist!
ERROR:: Exit from: ..\..\src\apps\public\boinc\minirosetta.cc line: 74
called boinc_finish

</stderr_txt>
]]>

http://boinc.bakerlab.org/rosetta/result.php?resultid=203982392


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Message 56594 - Posted 1 Nov 2008 10:17:25 UTC

Same error:

<core_client_version>6.2.19</core_client_version>
<![CDATA[
<message>
Unzul�ssige Funktion. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>

ERROR: in::file::zip minirosetta_database.zip does not exist!
ERROR:: Exit from: ..\..\src\apps\public\boinc\minirosetta.cc line: 74
called boinc_finish

</stderr_txt>
]]>

http://boinc.bakerlab.org/rosetta/result.php?resultid=204064551

hakim

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Message 56596 - Posted 1 Nov 2008 12:18:40 UTC

over 100 unit with !

<core_client_version>6.2.19</core_client_version>
<![CDATA[
<message>
Niepoprawna funkcja. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>

ERROR: in::file::zip minirosetta_database.zip does not exist!
ERROR:: Exit from: ..\..\src\apps\public\boinc\minirosetta.cc line: 74
called boinc_finish

</stderr_txt>
]]>

not nice

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Message 56598 - Posted 1 Nov 2008 14:26:18 UTC

Hm, looks like a general problem with the WU or the client. Ane if you follow up some WUs, there are client errors all over the place.

I wonder, how long the servers can handle the load. More and more clients will run out of 'good' WUs...

Just my 2 cents...

Joe


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Message 56599 - Posted 1 Nov 2008 15:21:24 UTC

something different.

When looking at the graphics of 1irnA_ZNMP_ABRELAX_tetraR_IGNORE_THE_REST_ZINC_METALLOPROTEIN-1irnA-_4653_1986_0 it shows me about 10 moves and then closes the graphics window.

I can reopen it and then it does this again. Never seen it happen like this before 1.39

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Message 56605 - Posted 1 Nov 2008 17:18:30 UTC

http://boinc.bakerlab.org/rosetta/workunit.php?wuid=185965648

billy ewell 1931

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Message 56611 - Posted 1 Nov 2008 22:19:49 UTC

Beginning 31 October 20:35 UTC and continuing, every work unit with the application "Rosetta Mini with new score terms" has errored out after less than one second of cpu time. Over 20 work units involved. Work units with the application "Rosetta Mini" are computing without error; approximately 20 units.
Obviously there is a problem, unfortunately. Access my account in any way you wish to evaluate the problem(s). Bill

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Message 56623 - Posted 2 Nov 2008 10:20:39 UTC

3 fresh WUs, v1.39, computation error after 14-40 minutes.

02.11.2008 15:21:00|rosetta@home|Computation for task abinitio_nohomfrag_70_A_1jfvA_4466_83424_0 finished
02.11.2008 15:21:00|rosetta@home|Output file abinitio_nohomfrag_70_A_1jfvA_4466_83424_0_0 for task abinitio_nohomfrag_70_A_1jfvA_4466_83424_0 absent
02.11.2008 15:21:00|rosetta@home|Starting abinitio_nohomfrag_70_A_2uzrA_4466_83276_0
02.11.2008 15:21:00|rosetta@home|Starting task abinitio_nohomfrag_70_A_2uzrA_4466_83276_0 using minirosetta version 139
02.11.2008 15:25:41|rosetta@home|Computation for task abinitio_nohomfrag_70_A_2uzrA_4466_83276_0 finished
02.11.2008 15:25:41|rosetta@home|Output file abinitio_nohomfrag_70_A_2uzrA_4466_83276_0_0 for task abinitio_nohomfrag_70_A_2uzrA_4466_83276_0 absent
02.11.2008 15:25:41|rosetta@home|Starting abinitio_nohomfrag_70_A_1unpA_4466_83485_1
02.11.2008 15:25:41|rosetta@home|Starting task abinitio_nohomfrag_70_A_1unpA_4466_83485_1 using minirosetta version 139
02.11.2008 15:42:03|rosetta@home|Computation for task abinitio_nohomfrag_70_A_1unpA_4466_83485_1 finished
02.11.2008 15:42:03|rosetta@home|Output file abinitio_nohomfrag_70_A_1unpA_4466_83485_1_0 for task abinitio_nohomfrag_70_A_1unpA_4466_83485_1 absent

Tony Kitson

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Message 56625 - Posted 2 Nov 2008 11:22:25 UTC

My Minirosetta calcs run fine up to about 94-95% completion when it slows dramatically and the final 5-6% taking a couple of hours or more to complete. Any ideas?
____________

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Message 56626 - Posted 2 Nov 2008 12:45:31 UTC

My Minirosetta calcs run fine up to about 94-95% completion when it slows dramatically and the final 5-6% taking a couple of hours or more to complete. Any ideas?


Sounds normal for the complex proteins. Look carefully at the graphics and you will see occasional small movements in the side chains and the steps moving up slowly.
____________

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Message 56629 - Posted 2 Nov 2008 13:15:55 UTC - in response to Message ID 56626.

My Minirosetta calcs run fine up to about 94-95% completion when it slows dramatically and the final 5-6% taking a couple of hours or more to complete. Any ideas?


Sounds normal for the complex proteins. Look carefully at the graphics and you will see occasional small movements in the side chains and the steps moving up slowly.


OK - thanks. Makes a mockery of the "Time to Completion" estimate though . . .
____________

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Message 56634 - Posted 2 Nov 2008 15:17:10 UTC

The graphics application in 1.39 is very, very unstable. I rarely get the graphics to stay on. For most of the time, they shut down almost immediately. Thankfully the work unit goes on.

I'm using Boinc 6.2.19 on Windows XP SP3, and not utilising the safe mode (for compatibility with older applications' graphics, not that it probably matters much in this respect).

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Message 56635 - Posted 2 Nov 2008 15:58:43 UTC - in response to Message ID 56626.

My Minirosetta calcs run fine up to about 94-95% completion when it slows dramatically and the final 5-6% taking a couple of hours or more to complete. Any ideas?


Sounds normal for the complex proteins. Look carefully at the graphics and you will see occasional small movements in the side chains and the steps moving up slowly.


Oh, I had the same last time. Unfortunately it looked like a bit different - I've turned the graphical application on on something like 95% - and than I saw: Model 1, step around 30,000 (and increasing fast) and the early stage of the process - big, "classical" movements.

It looked like a restart or some other "trajectory". What is more, the client was behaving in a different manner than described on the help sites. It did not keep the lowest energy found as a "low energy" state but had some other preferences.

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Message 56639 - Posted 2 Nov 2008 19:50:07 UTC - in response to Message ID 56634.

The graphics application in 1.39 is very, very unstable. I rarely get the graphics to stay on. For most of the time, they shut down almost immediately. Thankfully the work unit goes on.

I've noticed the same thing
____________
Have a crunching good day!!

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Message 56647 - Posted 2 Nov 2008 22:40:56 UTC - in response to Message ID 56639.

The graphics application in 1.39 is very, very unstable. I rarely get the graphics to stay on. For most of the time, they shut down almost immediately. Thankfully the work unit goes on.

I've noticed the same thing


Same here.
____________

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Message 56648 - Posted 2 Nov 2008 23:12:10 UTC

I haven't noticed any graphics instability with the with 1.39 with the 15 work units I have done/doing today. I have XP (service pack 3) using BOINC 6.2.19
____________

chris

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Message 56658 - Posted 3 Nov 2008 8:43:42 UTC - in response to Message ID 56648.

I haven't noticed any graphics instability with the with 1.39 with the 15 work units I have done/doing today. I have XP (service pack 3) using BOINC 6.2.19


I think it is related to the Zink-Workunits. Other workunits do not seem to be affected.
____________

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Message 56666 - Posted 3 Nov 2008 14:37:01 UTC - in response to Message ID 56658.

I haven't noticed any graphics instability with the with 1.39 with the 15 work units I have done/doing today. I have XP (service pack 3) using BOINC 6.2.19


I think it is related to the Zink-Workunits. Other workunits do not seem to be affected.



see my post which I identified one Zinc work unit that the graphics cut out on me. See if you have a matching or similar named task.

These zinc tasks are causing all kinds of fun problems for the team to explore.

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Message 56679 - Posted 3 Nov 2008 20:08:59 UTC
Last modified: 3 Nov 2008 20:13:34 UTC

Not sure if this actually belongs here, but nevertheless:

I just noticed that the low energy value in the screensaver jumps to a higher value at times.
Is that intended?

Edit: I wouldn't have posted this if that had happened when the computation of a new model started.

GT82 [HWU]

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Message 56682 - Posted 3 Nov 2008 20:47:21 UTC
Last modified: 3 Nov 2008 20:47:54 UTC

I'm having many WU's with this message

--> http://boinc.bakerlab.org/rosetta/result.php?resultid=204831583

What I have to do?

Chu

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Message 56686 - Posted 3 Nov 2008 23:10:49 UTC - in response to Message ID 56679.

Hi, this could happen if during the course of simulation, different energy functions are switched at different stages.

Not sure if this actually belongs here, but nevertheless:

I just noticed that the low energy value in the screensaver jumps to a higher value at times.
Is that intended?

Edit: I wouldn't have posted this if that had happened when the computation of a new model started.


____________

Chu

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Message 56687 - Posted 3 Nov 2008 23:14:23 UTC - in response to Message ID 56666.

Hi everyone, thanks for reporting the graphic problem of ZN workunits. We are currently running local tests hoping to locate and fix the problem as soon as possible. Meanwhile, please be assured that this error does not seem to affect actual model production and your credits should not be affected at all. Sorry for the inconvenience.

I haven't noticed any graphics instability with the with 1.39 with the 15 work units I have done/doing today. I have XP (service pack 3) using BOINC 6.2.19


I think it is related to the Zink-Workunits. Other workunits do not seem to be affected.



see my post which I identified one Zinc work unit that the graphics cut out on me. See if you have a matching or similar named task.

These zinc tasks are causing all kinds of fun problems for the team to explore.


____________

Chu

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Message 56688 - Posted 3 Nov 2008 23:20:06 UTC - in response to Message ID 56682.

A quick look at your host's recent job history showed that you got client errors for almost all types of WUs sent out, which have been running fine and have had models returned successfully on other host computers. I would suggest to restart your boinc manager to see if the problem goes away. And sorry for this trouble you have had on your computer.

I'm having many WU's with this message

--> http://boinc.bakerlab.org/rosetta/result.php?resultid=204831583

What I have to do?


____________

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Message 56700 - Posted 4 Nov 2008 13:56:38 UTC - in response to Message ID 56498.

Please report issues and bugs with Minirosetta v1.39 in this thread. In this update, we added two important applications, protein docking and protein folding with explicit metal ions. From the graphics, you probably can tell them by a structure with two different chain colors and a protein folding around a colored sphere, respectively. See the Rosett@home science section for more descriptions on these projects.



When I choice "Show Graphics" - the graphics last for less than thirty (30) seconds !! It is very upseting - I love staring at the graphics !!
____________

Evan

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Message 56701 - Posted 4 Nov 2008 14:02:16 UTC

When I choice "Show Graphics" - the graphics last for less than thirty (30) seconds !! It is very upseting - I love staring at the graphics !!


They are working on the problem as reported by Chu yesterday:
Hi everyone, thanks for reporting the graphic problem of ZN workunits. We are currently running local tests hoping to locate and fix the problem as soon as possible. Meanwhile, please be assured that this error does not seem to affect actual model production and your credits should not be affected at all. Sorry for the inconvenience.

____________

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Message 56707 - Posted 4 Nov 2008 18:04:44 UTC

<core_client_version>6.2.19</core_client_version>
<![CDATA[
<message>
CreateProcess() failed - Access is denied. (0x5)
</message>
]]>


205025484
204992187
____________

Path7

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Message 56738 - Posted 6 Nov 2008 21:16:39 UTC

Hello all,

Today had twice the message: Too many restarts with no progress. Keep application in memory while preempted.
This happened on these Wu's:
205405417
205370450

Those applications were kept in memory while preempted.

Have a nice day,
Path7.

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Message 56811 - Posted 10 Nov 2008 20:08:47 UTC

http://boinc.bakerlab.org/rosetta/workunit.php?wuid=187092773
http://boinc.bakerlab.org/rosetta/result.php?resultid=204838405

____________

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Message 56812 - Posted 10 Nov 2008 20:16:22 UTC

10.11.2008 20:47:51|rosetta@home|Starting 1co4A_ZNMP_ABRELAX_tetraL_IGNORE_THE_REST_ZINC_METALLOPROTEIN-1co4A-_4652_24130_0

if olpen graf. it's close in 10-14 sec. ((

____________

Pepo
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Message 56834 - Posted 11 Nov 2008 14:44:19 UTC - in response to Message ID 56512.

Please, please, please notify us of new versions in
Rosetta Application Version Release Log.

There's one catch with this. Since some one year ago, older BOINC threads occasionally gets marked as unread, completely, all messages. No idea why. Even if the thread is marked for notifications, no one will come until you'll read the thread :-(

A bit newer forum SW (than Rosetta is using) is overcoming this issue by sending a notification not just for first unread post, but for each newer post.

I've for instance got no notification for the last two messages in the Rosetta Application Version Release Log thread.

Peter

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Message 56895 - Posted 13 Nov 2008 6:55:47 UTC

http://boinc.bakerlab.org/rosetta/workunit.php?wuid=187092773

____________

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Message 57006 - Posted 16 Nov 2008 22:08:28 UTC

http://boinc.bakerlab.org/rosetta/result.php?resultid=205615103
http://boinc.bakerlab.org/rosetta/result.php?resultid=205065805
____________

Message boards : Number crunching : Minirosetta v1.39 bug thread


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